| Year |
Citation |
Score |
| 2024 |
Shinde AP, Kučerová J, Dacks JB, Tachezy J. The retromer and retriever systems are conserved and differentially expanded in parabasalids. Journal of Cell Science. 137. PMID 38884339 DOI: 10.1242/jcs.261949 |
0.322 |
|
| 2024 |
Klinger CM, Jimenez-Ruiz E, Mourier T, Klingl A, Lemgruber L, Pain A, Dacks JB, Meissner M. Evolutionary analysis identifies a Golgi pathway and correlates lineage-specific factors with endomembrane organelle emergence in apicomplexans. Cell Reports. 43: 113740. PMID 38363682 DOI: 10.1016/j.celrep.2024.113740 |
0.332 |
|
| 2023 |
Pipaliya SV, Dacks JB, Croxen MA. Genomic survey maps differences in the molecular complement of vesicle formation machinery between Giardia intestinalis assemblages. Plos Neglected Tropical Diseases. 17: e0011837. PMID 38109380 DOI: 10.1371/journal.pntd.0011837 |
0.335 |
|
| 2023 |
Novák LVF, Treitli SC, Pyrih J, Hałakuc P, Pipaliya SV, Vacek V, Brzoň O, Soukal P, Eme L, Dacks JB, Karnkowska A, Eliáš M, Hampl V. Genomics of Preaxostyla Flagellates Illuminates the Path Towards the Loss of Mitochondria. Plos Genetics. 19: e1011050. PMID 38060519 DOI: 10.1371/journal.pgen.1011050 |
0.309 |
|
| 2023 |
Blaz J, Galindo LJ, Heiss AA, Kaur H, Torruella G, Yang A, Alexa Thompson L, Filbert A, Warring S, Narechania A, Shiratori T, Ishida KI, Dacks JB, López-García P, Moreira D, et al. One high quality genome and two transcriptome datasets for new species of Mantamonas, a deep-branching eukaryote clade. Scientific Data. 10: 603. PMID 37689692 DOI: 10.1038/s41597-023-02488-2 |
0.31 |
|
| 2023 |
Prokopchuk G, Butenko A, Dacks JB, Speijer D, Field MC, Lukeš J. Lessons from the deep: mechanisms behind diversification of eukaryotic protein complexes. Biological Reviews of the Cambridge Philosophical Society. PMID 37336550 DOI: 10.1111/brv.12988 |
0.368 |
|
| 2023 |
Faktorová D, Záhonová K, Benz C, Dacks JB, Field MC, Lukeš J. Functional differentiation of Sec13 paralogues in the euglenozoan protists. Open Biology. 13: 220364. PMID 37311539 DOI: 10.1098/rsob.220364 |
0.324 |
|
| 2023 |
Záhonová K, Low RS, Warren CJ, Cantoni D, Herman EK, Yiangou L, Ribeiro CA, Phanprasert Y, Brown IR, Rueckert S, Baker NL, Tachezy J, Betts EL, Gentekaki E, van der Giezen M, ... ... Dacks JB, et al. Evolutionary analysis of cellular reduction and anaerobicity in the hyper-prevalent gut microbe Blastocystis. Current Biology : Cb. PMID 37267944 DOI: 10.1016/j.cub.2023.05.025 |
0.372 |
|
| 2023 |
Koreny L, Mercado-Saavedra BN, Klinger CM, Barylyuk K, Butterworth S, Hirst J, Rivera-Cuevas Y, Zaccai NR, Holzer VJC, Klingl A, Dacks JB, Carruthers VB, Robinson MS, Gras S, Waller RF. Stable endocytic structures navigate the complex pellicle of apicomplexan parasites. Nature Communications. 14: 2167. PMID 37061511 DOI: 10.1038/s41467-023-37431-x |
0.328 |
|
| 2023 |
Maciejowski WJ, Gile GH, Jerlström-Hultqvist J, Dacks JB. Ancient and pervasive expansion of adaptin-related vesicle coat machinery across Parabasalia. International Journal For Parasitology. PMID 36898426 DOI: 10.1016/j.ijpara.2023.01.002 |
0.311 |
|
| 2022 |
Barlow LD, Maciejowski W, More K, Terry K, Vargová R, Záhonová K, Dacks JB. Comparative Genomics for Evolutionary Cell Biology Using AMOEBAE: Understanding the Golgi and Beyond. Methods in Molecular Biology (Clifton, N.J.). 2557: 431-452. PMID 36512230 DOI: 10.1007/978-1-0716-2639-9_26 |
0.312 |
|
| 2022 |
Kontou A, Herman EK, Field MC, Dacks JB, Koumandou VL. Evolution of factors shaping the endoplasmic reticulum. Traffic (Copenhagen, Denmark). 23: 462-473. PMID 36040076 DOI: 10.1111/tra.12863 |
0.324 |
|
| 2022 |
Phanprasert Y, Maciszewski K, Gentekaki E, Dacks JB. Comparative genomic analysis illustrates evolutionary dynamics of multi-subunit tethering complexes across green algal diversity. The Journal of Eukaryotic Microbiology. e12935. PMID 35790054 DOI: 10.1111/jeu.12935 |
0.344 |
|
| 2022 |
Kaur H, Richardson E, Kamra K, Dacks JB. Molecular Evolutionary Analysis of the SM and SNARE Vesicle Fusion Machinery in Ciliates shows Concurrent Expansions in Late Secretory Machinery. The Journal of Eukaryotic Microbiology. e12919. PMID 35460134 DOI: 10.1111/jeu.12919 |
0.376 |
|
| 2022 |
Richardson E, Dacks JB. Distribution of membrane trafficking system components across ciliate diversity highlights heterogenous organelle-associated machinery. Traffic (Copenhagen, Denmark). PMID 35128766 DOI: 10.1111/tra.12834 |
0.395 |
|
| 2021 |
Pipaliya SV, Santos R, Salas-Leiva D, Balmer EA, Wirdnam CD, Roger AJ, Hehl AB, Faso C, Dacks JB. Unexpected organellar locations of ESCRT machinery in Giardia intestinalis and complex evolutionary dynamics spanning the transition to parasitism in the lineage Fornicata. Bmc Biology. 19: 167. PMID 34446013 DOI: 10.1186/s12915-021-01077-2 |
0.568 |
|
| 2021 |
Vargová R, Wideman JG, Derelle R, Klimeš V, Kahn RA, Dacks JB, Eliáš M. A eukaryote-wide perspective on the diversity and evolution of the ARF GTPase protein family. Genome Biology and Evolution. PMID 34247240 DOI: 10.1093/gbe/evab157 |
0.695 |
|
| 2021 |
Pipaliya SV, Thompson LA, Dacks JB. The reduced ARF regulatory system in Giardia intestinalis pre-dates the transition to parasitism in the lineage Fornicata. International Journal For Parasitology. PMID 33848497 DOI: 10.1016/j.ijpara.2021.02.004 |
0.407 |
|
| 2021 |
Žárský V, Klimeš V, Pačes J, Vlček Č, Hradilová M, Beneš V, Nývltová E, Hrdý I, Pyrih J, Mach J, Barlow L, Stairs CW, Eme L, Hall N, Eliáš M, ... Dacks JB, et al. The Mastigamoeba balamuthi genome and the nature of the free-living ancestor of Entamoeba. Molecular Biology and Evolution. PMID 33528570 DOI: 10.1093/molbev/msab020 |
0.577 |
|
| 2020 |
More K, Klinger CM, Barlow LD, Dacks JB. Evolution and Natural History of Membrane Trafficking in Eukaryotes. Current Biology : Cb. 30: R553-R564. PMID 32428497 DOI: 10.1016/J.Cub.2020.03.068 |
0.491 |
|
| 2019 |
Larson RT, Dacks JB, Barlow LD. Recent gene duplications dominate evolutionary dynamics of adaptor protein complex subunits in embryophytes. Traffic (Copenhagen, Denmark). PMID 31518038 DOI: 10.1111/Tra.12698 |
0.45 |
|
| 2019 |
Rueckert S, Pipaliya SV, Dacks JB. Evolution: Parallel Paths to Parasitism in the Apicomplexa. Current Biology : Cb. 29: R836-R839. PMID 31505182 DOI: 10.1016/J.Cub.2019.07.047 |
0.378 |
|
| 2019 |
Karnkowska A, Treitli SC, Brzoň O, Novák L, Vacek V, Soukal P, Barlow LD, Herman EK, Pipaliya SV, Pánek T, Žihala D, Petrželková R, Butenko A, Eme L, Stairs CW, ... ... Dacks JB, et al. The oxymonad genome displays canonical eukaryotic complexity in the absence of a mitochondrion. Molecular Biology and Evolution. PMID 31387118 DOI: 10.1093/Molbev/Msz147 |
0.593 |
|
| 2019 |
Pipaliya SV, Schlacht A, Klinger CM, Kahn RA, Dacks J. Ancient complement and lineage-specific evolution of the Sec7 ARF GEF proteins in eukaryotes. Molecular Biology of the Cell. mbcE19010073. PMID 31141460 DOI: 10.1091/Mbc.E19-01-0073 |
0.468 |
|
| 2019 |
Ebrahimzadeh Z, Mukherjee A, Crochetière MÈ, Sergerie A, Amiar S, Thompson LA, Gagnon D, Gaumond D, Stahelin RV, Dacks JB, Richard D. A pan-apicomplexan phosphoinositide-binding protein acts in malarial microneme exocytosis. Embo Reports. PMID 31097469 DOI: 10.15252/Embr.201847102 |
0.353 |
|
| 2019 |
Sztul E, Chen PW, Casanova JE, Cherfils J, Dacks JB, Lambright DG, Lee FS, Randazzo PA, Santy LC, Schürmann A, Wilhelmi I, Yohe ME, Kahn RA. ARF GTPases and their GEFs and GAPs: concepts and challenges. Molecular Biology of the Cell. 30: 1249-1271. PMID 31084567 DOI: 10.1091/Mbc.E18-12-0820 |
0.42 |
|
| 2019 |
Ebenezer TE, Zoltner M, Burrell A, Nenarokova A, Novák Vanclová AMG, Prasad B, Soukal P, Santana-Molina C, O'Neill E, Nankissoor NN, Vadakedath N, Daiker V, Obado S, Silva-Pereira S, Jackson AP, ... ... Dacks JB, et al. Transcriptome, proteome and draft genome of Euglena gracilis. Bmc Biology. 17: 11. PMID 30732613 DOI: 10.1186/S12915-019-0626-8 |
0.36 |
|
| 2018 |
Dacks JB. Evolving eukaryotes: an interview with Joel Dacks. Bmc Biology. 16: 119. PMID 30382870 DOI: 10.1186/S12915-018-0586-4 |
0.387 |
|
| 2018 |
Ramirez-Macias I, Barlow LD, Anton C, Spang A, Roncero C, Dacks JB. Evolutionary cell biology traces the rise of the exomer complex in Fungi from an ancient eukaryotic component. Scientific Reports. 8: 11154. PMID 30042439 DOI: 10.1038/S41598-018-29416-4 |
0.483 |
|
| 2018 |
Dacks JB, Field MC. Evolutionary origins and specialisation of membrane transport. Current Opinion in Cell Biology. 53: 70-76. PMID 29929066 DOI: 10.1016/J.Ceb.2018.06.001 |
0.387 |
|
| 2018 |
Klinger CM, Paoli L, Newby RJ, Wang MY, Carroll HD, Leblond JD, Howe CJ, Dacks JB, Bowler C, Cahoon AB, Dorrell RG, Richardson E. Plastid Transcript Editing across Dinoflagellate Lineages Shows Lineage-Specific Application but Conserved Trends. Genome Biology and Evolution. 10: 1019-1038. PMID 29617800 DOI: 10.1093/Gbe/Evy057 |
0.411 |
|
| 2018 |
Herman EK, Ali M, Field MC, Dacks JB. Regulation of early endosomes across eukaryotes: Evolution and functional homology of Vps9 proteins. Traffic (Copenhagen, Denmark). PMID 29603841 DOI: 10.1111/Tra.12570 |
0.455 |
|
| 2018 |
Herman EK, Yiangou L, Cantoni DM, Miller CN, Marciano-Cabral F, Anthonyrajah E, Dacks JB, Tsaousis AD. Identification and characterisation of the cryptic Golgi apparatus in. Journal of Cell Science. PMID 29535209 DOI: 10.1242/Jcs.213306 |
0.448 |
|
| 2018 |
Barlow LD, Nývltová E, Aguilar M, Tachezy J, Dacks JB. A sophisticated, differentiated Golgi in the ancestor of eukaryotes. Bmc Biology. 16: 27. PMID 29510703 DOI: 10.1186/S12915-018-0492-9 |
0.438 |
|
| 2018 |
Sparvoli D, Richardson E, Osakada H, Lan X, Iwamoto M, Bowman GR, Kontur C, Bourland WA, Lynn DH, Pritchard JK, Haraguchi T, Dacks JB, Turkewitz AP. Remodeling the Specificity of an Endosomal CORVET Tether Underlies Formation of Regulated Secretory Vesicles in the Ciliate Tetrahymena thermophila. Current Biology : Cb. PMID 29478853 DOI: 10.1016/J.Cub.2018.01.047 |
0.458 |
|
| 2017 |
Herman E, Siegesmund MA, Bottery MJ, van Aerle R, Shather MM, Caler E, Dacks JB, van der Giezen M. Membrane Trafficking Modulation during Entamoeba Encystation. Scientific Reports. 7: 12854. PMID 28993644 DOI: 10.1038/S41598-017-12875-6 |
0.383 |
|
| 2017 |
Barlow LD, Dacks JB. Seeing the endomembrane system for the trees: Evolutionary analysis highlights the importance of plants as models for eukaryotic membrane-trafficking. Seminars in Cell & Developmental Biology. PMID 28939036 DOI: 10.1016/J.Semcdb.2017.09.027 |
0.393 |
|
| 2017 |
Gentekaki E, Curtis BA, Stairs CW, Klimeš V, Eliáš M, Salas-Leiva DE, Herman EK, Eme L, Arias MC, Henrissat B, Hilliou F, Klute MJ, Suga H, Malik SB, Pightling AW, ... ... Dacks JB, et al. Extreme genome diversity in the hyper-prevalent parasitic eukaryote Blastocystis. Plos Biology. 15: e2003769. PMID 28892507 DOI: 10.1371/Journal.Pbio.2003769 |
0.727 |
|
| 2017 |
Dacks JB, Robinson MS. Outerwear through the ages: evolutionary cell biology of vesicle coats. Current Opinion in Cell Biology. 47: 108-116. PMID 28622586 DOI: 10.1016/J.Ceb.2017.04.001 |
0.392 |
|
| 2017 |
Venkatesh D, Boehm C, Barlow LD, Nankissoor NN, O'Reilly A, Kelly S, Dacks JB, Field MC. Evolution of the endomembrane systems of trypanosomatids: conservation and specialisation. Journal of Cell Science. PMID 28386020 DOI: 10.1242/Jcs.197640 |
0.455 |
|
| 2016 |
Dorrell RG, Klinger CM, Newby RJ, Butterfield ER, Richardson E, Dacks JB, Howe CJ, Nisbet RE, Bowler C. Progressive and biased divergent evolution underpins the origin and diversification of peridinin dinoflagellate plastids. Molecular Biology and Evolution. PMID 27816910 DOI: 10.1093/Molbev/Msw235 |
0.44 |
|
| 2016 |
Guerrier S, Plattner H, Richardson EH, Dacks JB, Turkewitz AP. An evolutionary balance: conservation vs. innovation in ciliate membrane trafficking. Traffic (Copenhagen, Denmark). PMID 27696651 DOI: 10.1111/Tra.12450 |
0.439 |
|
| 2016 |
Dacks JB, Field MC, Buick R, Eme L, Gribaldo S, Roger AJ, Brochier-Armanet C, Devos DP. The changing view of eukaryogenesis - fossils, cells, lineages and how they all come together. Journal of Cell Science. PMID 27672020 DOI: 10.1242/Jcs.178566 |
0.594 |
|
| 2016 |
Klinger CM, Ramirez-Macias I, Herman EK, Turkewitz AP, Field MC, Dacks JB. Resolving the homology-function relationship through comparative genomics of membrane-trafficking machinery and parasite cell biology. Molecular and Biochemical Parasitology. PMID 27444378 DOI: 10.1016/J.Molbiopara.2016.07.003 |
0.475 |
|
| 2016 |
Karnkowska A, Vacek V, Zubáčová Z, Treitli SC, Petrželková R, Eme L, Novák L, Žárský V, Barlow LD, Herman EK, Soukal P, Hroudová M, Doležal P, Stairs CW, Roger AJ, ... ... Dacks JB, et al. A Eukaryote without a Mitochondrial Organelle. Current Biology : Cb. PMID 27185558 DOI: 10.1016/J.Cub.2016.03.053 |
0.628 |
|
| 2016 |
Klinger CM, Spang A, Dacks JB, Ettema TJ. Tracing the archaeal origins of eukaryotic membrane-trafficking system building blocks. Molecular Biology and Evolution. PMID 26893300 DOI: 10.1093/Molbev/Msw034 |
0.461 |
|
| 2015 |
Muñoz-Gómez SA, Slamovits CH, Dacks JB, Wideman JG. The evolution of MICOS: Ancestral and derived functions and interactions. Communicative & Integrative Biology. 8: e1094593. PMID 27065250 DOI: 10.1080/19420889.2015.1094593 |
0.704 |
|
| 2015 |
Jackson AP, Otto TD, Aslett M, Armstrong SD, Bringaud F, Schlacht A, Hartley C, Sanders M, Wastling JM, Dacks JB, Acosta-Serrano A, Field MC, Ginger ML, Berriman M. Kinetoplastid Phylogenomics Reveals the Evolutionary Innovations Associated with the Origins of Parasitism. Current Biology : Cb. PMID 26725202 DOI: 10.1016/J.Cub.2015.11.055 |
0.477 |
|
| 2015 |
Richardson E, Zerr K, Tsaousis A, Dorrell RG, Dacks JB. Evolutionary cell biology: functional insight from "endless forms most beautiful". Molecular Biology of the Cell. 26: 4532-8. PMID 26668171 DOI: 10.1091/Mbc.E14-10-1433 |
0.463 |
|
| 2015 |
Lee LJ, Klute MJ, Herman EK, Read B, Dacks JB. Losses, Expansions, and Novel Subunit Discovery of Adaptor Protein Complexes in Haptophyte Algae. Protist. 166: 585-597. PMID 26519625 DOI: 10.1016/J.Protis.2015.07.004 |
0.451 |
|
| 2015 |
Woo YH, Ansari H, Otto TD, Klinger CM, Kolisko M, Michálek J, Saxena A, Shanmugam D, Tayyrov A, Veluchamy A, Ali S, Bernal A, del Campo J, Cihlář J, Flegontov P, ... ... Dacks JB, et al. Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites. Elife. 4: e06974. PMID 26175406 DOI: 10.7554/Elife.06974 |
0.551 |
|
| 2015 |
Muñoz-Gómez SA, Slamovits CH, Dacks JB, Baier KA, Spencer KD, Wideman JG. Ancient homology of the mitochondrial contact site and cristae organizing system points to an endosymbiotic origin of mitochondrial cristae. Current Biology : Cb. 25: 1489-95. PMID 26004762 DOI: 10.1016/J.Cub.2015.04.006 |
0.716 |
|
| 2015 |
Schlacht A, Dacks JB. Unexpected ancient paralogs and an evolutionary model for the COPII coat complex. Genome Biology and Evolution. 7: 1098-109. PMID 25747251 DOI: 10.1093/Gbe/Evv045 |
0.429 |
|
| 2015 |
Chang J, Klute MJ, Tower RJ, Mast FD, Dacks JB, Rachubinski RA. An ancestral role in peroxisome assembly is retained by the divisional peroxin Pex11 in the yeast Yarrowia lipolytica. Journal of Cell Science. 128: 1327-40. PMID 25663700 DOI: 10.1242/Jcs.157743 |
0.451 |
|
| 2015 |
Arasaki K, Shimizu H, Mogari H, Nishida N, Hirota N, Furuno A, Kudo Y, Baba M, Baba N, Cheng J, Fujimoto T, Ishihara N, Ortiz-Sandoval C, Barlow LD, Raturi A, ... ... Dacks JB, et al. A role for the ancient SNARE syntaxin 17 in regulating mitochondrial division. Developmental Cell. 32: 304-17. PMID 25619926 DOI: 10.1016/J.Devcel.2014.12.011 |
0.37 |
|
| 2015 |
Kaderi Kibria KM, Rawat K, Klinger CM, Datta G, Panchal M, Singh S, Iyer GR, Kaur I, Sharma V, Dacks JB, Mohmmed A, Malhotra P. A role for adaptor protein complex 1 in protein targeting to rhoptry organelles in Plasmodium falciparum. Biochimica Et Biophysica Acta. 1854: 699-710. PMID 25573429 DOI: 10.1016/J.Bbamcr.2014.12.030 |
0.386 |
|
| 2015 |
Woo YH, Ansari H, Otto TD, Klinger CM, Kolisko M, Michálek J, Saxena A, Shanmugam D, Tayyrov A, Veluchamy A, Ali S, Bernal A, Campo Jd, Cihlář J, Flegontov P, ... ... Dacks JB, et al. Author response: Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites Elife. DOI: 10.7554/Elife.06974.033 |
0.542 |
|
| 2014 |
Ortiz-Sandoval CG, Hughes SC, Dacks JB, Simmen T. Interaction with the effector dynamin-related protein 1 (Drp1) is an ancient function of Rab32 subfamily proteins. Cellular Logistics. 4: e986399. PMID 25767741 DOI: 10.4161/21592799.2014.986399 |
0.436 |
|
| 2014 |
Smart HC, Mast FD, Chilije MF, Tavassoli M, Dacks JB, Zaremberg V. Phylogenetic analysis of glycerol 3-phosphate acyltransferases in opisthokonts reveals unexpected ancestral complexity and novel modern biosynthetic components. Plos One. 9: e110684. PMID 25340523 DOI: 10.1371/Journal.Pone.0110684 |
0.446 |
|
| 2014 |
Schlacht A, Herman EK, Klute MJ, Field MC, Dacks JB. Missing pieces of an ancient puzzle: evolution of the eukaryotic membrane-trafficking system. Cold Spring Harbor Perspectives in Biology. 6: a016048. PMID 25274701 DOI: 10.1101/Cshperspect.A016048 |
0.447 |
|
| 2014 |
Maguire F, Henriquez FL, Leonard G, Dacks JB, Brown MW, Richards TA. Complex patterns of gene fission in the eukaryotic folate biosynthesis pathway. Genome Biology and Evolution. 6: 2709-20. PMID 25252772 DOI: 10.1093/Gbe/Evu213 |
0.412 |
|
| 2014 |
Hirst J, Schlacht A, Norcott JP, Traynor D, Bloomfield G, Antrobus R, Kay RR, Dacks JB, Robinson MS. Characterization of TSET, an ancient and widespread membrane trafficking complex. Elife. 3: e02866. PMID 24867644 DOI: 10.7554/Elife.02866 |
0.451 |
|
| 2014 |
Barlow LD, Dacks JB, Wideman JG. From all to (nearly) none: Tracing adaptin evolution in Fungi. Cellular Logistics. 4: e28114. PMID 24843829 DOI: 10.4161/Cl.28114 |
0.692 |
|
| 2014 |
Mast FD, Barlow LD, Rachubinski RA, Dacks JB. Evolutionary mechanisms for establishing eukaryotic cellular complexity. Trends in Cell Biology. 24: 435-42. PMID 24656655 DOI: 10.1016/J.Tcb.2014.02.003 |
0.444 |
|
| 2014 |
Wideman JG, Leung KF, Field MC, Dacks JB. The cell biology of the endocytic system from an evolutionary perspective. Cold Spring Harbor Perspectives in Biology. 6: a016998. PMID 24478384 DOI: 10.1101/Cshperspect.A016998 |
0.71 |
|
| 2014 |
Murungi E, Barlow LD, Venkatesh D, Adung'a VO, Dacks JB, Field MC, Christoffels A. A comparative analysis of trypanosomatid SNARE proteins. Parasitology International. 63: 341-8. PMID 24269876 DOI: 10.1016/J.Parint.2013.11.002 |
0.421 |
|
| 2014 |
De Franceschi N, Wild K, Schlacht A, Dacks JB, Sinning I, Filippini F. Longin and GAF domains: structural evolution and adaptation to the subcellular trafficking machinery. Traffic (Copenhagen, Denmark). 15: 104-21. PMID 24107188 DOI: 10.1111/Tra.12124 |
0.348 |
|
| 2014 |
Hirst J, Schlacht A, Norcott JP, Traynor D, Bloomfield G, Antrobus R, Kay RR, Dacks JB, Robinson MS. Author response: Characterization of TSET, an ancient and widespread membrane trafficking complex Elife. DOI: 10.7554/Elife.02866.033 |
0.318 |
|
| 2013 |
Klinger CM, Klute MJ, Dacks JB. Comparative genomic analysis of multi-subunit tethering complexes demonstrates an ancient pan-eukaryotic complement and sculpting in Apicomplexa. Plos One. 8: e76278. PMID 24086721 DOI: 10.1371/Journal.Pone.0076278 |
0.483 |
|
| 2013 |
Klinger CM, Nisbet RE, Ouologuem DT, Roos DS, Dacks JB. Cryptic organelle homology in apicomplexan parasites: insights from evolutionary cell biology. Current Opinion in Microbiology. 16: 424-31. PMID 23932202 DOI: 10.1016/J.Mib.2013.07.015 |
0.453 |
|
| 2013 |
Koumandou VL, Wickstead B, Ginger ML, van der Giezen M, Dacks JB, Field MC. Molecular paleontology and complexity in the last eukaryotic common ancestor. Critical Reviews in Biochemistry and Molecular Biology. 48: 373-96. PMID 23895660 DOI: 10.3109/10409238.2013.821444 |
0.463 |
|
| 2013 |
Wideman JG, Gawryluk RM, Gray MW, Dacks JB. The ancient and widespread nature of the ER-mitochondria encounter structure. Molecular Biology and Evolution. 30: 2044-9. PMID 23813918 DOI: 10.1093/Molbev/Mst120 |
0.702 |
|
| 2013 |
Read BA, Kegel J, Klute MJ, Kuo A, Lefebvre SC, Maumus F, Mayer C, Miller J, Monier A, Salamov A, Young J, Aguilar M, Claverie JM, Frickenhaus S, Gonzalez K, ... ... Dacks JB, et al. Pan genome of the phytoplankton Emiliania underpins its global distribution. Nature. 499: 209-13. PMID 23760476 DOI: 10.1038/Nature12221 |
0.367 |
|
| 2013 |
Spycher C, Herman EK, Morf L, Qi W, Rehrauer H, Aquino Fournier C, Dacks JB, Hehl AB. An ER-directed transcriptional response to unfolded protein stress in the absence of conserved sensor-transducer proteins in Giardia lamblia. Molecular Microbiology. 88: 754-71. PMID 23617761 DOI: 10.1111/Mmi.12218 |
0.353 |
|
| 2013 |
Gabernet-Castello C, O'Reilly AJ, Dacks JB, Field MC. Evolution of Tre-2/Bub2/Cdc16 (TBC) Rab GTPase-activating proteins. Molecular Biology of the Cell. 24: 1574-83. PMID 23485563 DOI: 10.1091/Mbc.E12-07-0557 |
0.433 |
|
| 2013 |
Schlacht A, Mowbrey K, Elias M, Kahn RA, Dacks JB. Ancient complexity, opisthokont plasticity, and discovery of the 11th subfamily of Arf GAP proteins. Traffic (Copenhagen, Denmark). 14: 636-49. PMID 23433073 DOI: 10.1111/Tra.12063 |
0.502 |
|
| 2013 |
Herman EK, Greninger AL, Visvesvara GS, Marciano-Cabral F, Dacks JB, Chiu CY. The mitochondrial genome and a 60-kb nuclear DNA segment from Naegleria fowleri, the causative agent of primary amoebic meningoencephalitis. The Journal of Eukaryotic Microbiology. 60: 179-91. PMID 23360210 DOI: 10.1111/Jeu.12022 |
0.409 |
|
| 2012 |
Curtis BA, Tanifuji G, Burki F, Gruber A, Irimia M, Maruyama S, Arias MC, Ball SG, Gile GH, Hirakawa Y, Hopkins JF, Kuo A, Rensing SA, Schmutz J, Symeonidi A, ... ... Dacks JB, et al. Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs. Nature. 492: 59-65. PMID 23201678 DOI: 10.1038/Nature11681 |
0.707 |
|
| 2012 |
East MP, Bowzard JB, Dacks JB, Kahn RA. ELMO domains, evolutionary and functional characterization of a novel GTPase-activating protein (GAP) domain for Arf protein family GTPases. The Journal of Biological Chemistry. 287: 39538-53. PMID 23014990 DOI: 10.1074/Jbc.M112.417477 |
0.394 |
|
| 2012 |
Elias M, Brighouse A, Gabernet-Castello C, Field MC, Dacks JB. Sculpting the endomembrane system in deep time: high resolution phylogenetics of Rab GTPases. Journal of Cell Science. 125: 2500-8. PMID 22366452 DOI: 10.1242/Jcs.101378 |
0.52 |
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| 2012 |
Mast FD, Rachubinski RA, Dacks JB. Emergent complexity in Myosin V-based organelle inheritance. Molecular Biology and Evolution. 29: 975-84. PMID 22046000 DOI: 10.1093/Molbev/Msr264 |
0.412 |
|
| 2012 |
Crosson S, Dacks JB. Cell biology of micro-organisms and the evolution of the eukaryotic cell Molecular Biology of the Cell. 23: 974. DOI: 10.1091/Mbc.E11-12-0974 |
0.392 |
|
| 2011 |
Abbasi K, DuBois KN, Leung KF, Dacks JB, Field MC. A novel Rho-like protein TbRHP is involved in spindle formation and mitosis in trypanosomes. Plos One. 6: e26890. PMID 22096505 DOI: 10.1371/Journal.Pone.0026890 |
0.403 |
|
| 2011 |
Hirst J, Barlow LD, Francisco GC, Sahlender DA, Seaman MN, Dacks JB, Robinson MS. The fifth adaptor protein complex. Plos Biology. 9: e1001170. PMID 22022230 DOI: 10.1371/Journal.Pbio.1001170 |
0.377 |
|
| 2011 |
Klute MJ, Melançon P, Dacks JB. Evolution and diversity of the Golgi. Cold Spring Harbor Perspectives in Biology. 3: a007849. PMID 21646379 DOI: 10.1101/Cshperspect.A007849 |
0.512 |
|
| 2011 |
O'Reilly AJ, Dacks JB, Field MC. Evolution of the karyopherin-β family of nucleocytoplasmic transport factors; ancient origins and continued specialization. Plos One. 6: e19308. PMID 21556326 DOI: 10.1371/Journal.Pone.0019308 |
0.365 |
|
| 2011 |
Koumandou VL, Klute MJ, Herman EK, Nunez-Miguel R, Dacks JB, Field MC. Evolutionary reconstruction of the retromer complex and its function in Trypanosoma brucei. Journal of Cell Science. 124: 1496-509. PMID 21502137 DOI: 10.1242/Jcs.081596 |
0.49 |
|
| 2011 |
Walker G, Dorrell RG, Schlacht A, Dacks JB. Eukaryotic systematics: a user's guide for cell biologists and parasitologists. Parasitology. 138: 1638-63. PMID 21320384 DOI: 10.1017/S0031182010001708 |
0.429 |
|
| 2011 |
Herman EK, Walker G, van der Giezen M, Dacks JB. Multivesicular bodies in the enigmatic amoeboflagellate Breviata anathema and the evolution of ESCRT 0. Journal of Cell Science. 124: 613-21. PMID 21266469 DOI: 10.1242/Jcs.078436 |
0.448 |
|
| 2010 |
Brighouse A, Dacks JB, Field MC. Rab protein evolution and the history of the eukaryotic endomembrane system. Cellular and Molecular Life Sciences : Cmls. 67: 3449-65. PMID 20582450 DOI: 10.1007/S00018-010-0436-1 |
0.498 |
|
| 2010 |
Manolea F, Chun J, Chen DW, Clarke I, Summerfeldt N, Dacks JB, Melançon P. Arf3 is activated uniquely at the trans-Golgi network by brefeldin A-inhibited guanine nucleotide exchange factors. Molecular Biology of the Cell. 21: 1836-49. PMID 20357002 DOI: 10.1091/Mbc.E10-01-0016 |
0.36 |
|
| 2010 |
Fritz-Laylin LK, Prochnik SE, Ginger ML, Dacks JB, Carpenter ML, Field MC, Kuo A, Paredez A, Chapman J, Pham J, Shu S, Neupane R, Cipriano M, Mancuso J, Tu H, et al. The genome of Naegleria gruberi illuminates early eukaryotic versatility. Cell. 140: 631-42. PMID 20211133 DOI: 10.1016/J.Cell.2010.01.032 |
0.468 |
|
| 2009 |
Vedovato M, Rossi V, Dacks JB, Filippini F. Comparative analysis of plant genomes allows the definition of the "Phytolongins": a novel non-SNARE longin domain protein family. Bmc Genomics. 10: 510. PMID 19889231 DOI: 10.1186/1471-2164-10-510 |
0.404 |
|
| 2009 |
Mowbrey K, Dacks JB. Evolution and diversity of the Golgi body. Febs Letters. 583: 3738-45. PMID 19837068 DOI: 10.1016/J.Febslet.2009.10.025 |
0.423 |
|
| 2009 |
Chang J, Mast FD, Fagarasanu A, Rachubinski DA, Eitzen GA, Dacks JB, Rachubinski RA. Pex3 peroxisome biogenesis proteins function in peroxisome inheritance as class V myosin receptors. The Journal of Cell Biology. 187: 233-46. PMID 19822674 DOI: 10.1083/Jcb.200902117 |
0.382 |
|
| 2009 |
Gabernet-Castello C, Dacks JB, Field MC. The single ENTH-domain protein of trypanosomes; endocytic functions and evolutionary relationship with epsin. Traffic (Copenhagen, Denmark). 10: 894-911. PMID 19416477 DOI: 10.1111/J.1600-0854.2009.00910.X |
0.431 |
|
| 2009 |
Hampl V, Hug L, Leigh JW, Dacks JB, Lang BF, Simpson AG, Roger AJ. Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic "supergroups". Proceedings of the National Academy of Sciences of the United States of America. 106: 3859-64. PMID 19237557 DOI: 10.1073/Pnas.0807880106 |
0.595 |
|
| 2009 |
Field MC, Dacks JB. First and last ancestors: reconstructing evolution of the endomembrane system with ESCRTs, vesicle coat proteins, and nuclear pore complexes. Current Opinion in Cell Biology. 21: 4-13. PMID 19201590 DOI: 10.1016/J.Ceb.2008.12.004 |
0.439 |
|
| 2009 |
Nevin WD, Dacks JB. Repeated secondary loss of adaptin complex genes in the Apicomplexa. Parasitology International. 58: 86-94. PMID 19146987 DOI: 10.1016/J.Parint.2008.12.002 |
0.472 |
|
| 2009 |
Dacks JB, Peden AA, Field MC. Evolution of specificity in the eukaryotic endomembrane system. The International Journal of Biochemistry & Cell Biology. 41: 330-40. PMID 18835459 DOI: 10.1016/J.Biocel.2008.08.041 |
0.474 |
|
| 2008 |
Leung KF, Dacks JB, Field MC. Evolution of the multivesicular body ESCRT machinery; retention across the eukaryotic lineage. Traffic (Copenhagen, Denmark). 9: 1698-716. PMID 18637903 DOI: 10.1111/J.1600-0854.2008.00797.X |
0.481 |
|
| 2008 |
Dacks JB, Kuru T, Liapounova NA, Gedamu L. Phylogenetic and primary sequence characterization of cathepsin B cysteine proteases from the oxymonad flagellate Monocercomonoides. The Journal of Eukaryotic Microbiology. 55: 9-17. PMID 18251797 DOI: 10.1111/J.1550-7408.2007.00296.X |
0.397 |
|
| 2008 |
Dacks JB, Poon PP, Field MC. Phylogeny of endocytic components yields insight into the process of nonendosymbiotic organelle evolution. Proceedings of the National Academy of Sciences of the United States of America. 105: 588-93. PMID 18182495 DOI: 10.1073/Pnas.0707318105 |
0.413 |
|
| 2008 |
Dacks JB, Walker G, Field MC. Implications of the new eukaryotic systematics for parasitologists. Parasitology International. 57: 97-104. PMID 18180199 DOI: 10.1016/J.Parint.2007.11.004 |
0.469 |
|
| 2007 |
Field MC, Gabernet-Castello C, Dacks JB. Reconstructing the evolution of the endocytic system: insights from genomics and molecular cell biology. Advances in Experimental Medicine and Biology. 607: 84-96. PMID 17977461 DOI: 10.1007/978-0-387-74021-8_7 |
0.355 |
|
| 2007 |
Dacks JB, Field MC. Evolution of the eukaryotic membrane-trafficking system: origin, tempo and mode. Journal of Cell Science. 120: 2977-85. PMID 17715154 DOI: 10.1242/Jcs.013250 |
0.54 |
|
| 2007 |
Koumandou VL, Dacks JB, Coulson RM, Field MC. Control systems for membrane fusion in the ancestral eukaryote; evolution of tethering complexes and SM proteins. Bmc Evolutionary Biology. 7: 29. PMID 17319956 DOI: 10.1186/1471-2148-7-29 |
0.466 |
|
| 2007 |
Carlton JM, Hirt RP, Silva JC, Delcher AL, Schatz M, Zhao Q, Wortman JR, Bidwell SL, Alsmark UC, Besteiro S, Sicheritz-Ponten T, Noel CJ, Dacks JB, Foster PG, Simillion C, et al. Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis. Science (New York, N.Y.). 315: 207-12. PMID 17218520 DOI: 10.1126/Science.1132894 |
0.439 |
|
| 2006 |
Liapounova NA, Hampl V, Gordon PM, Sensen CW, Gedamu L, Dacks JB. Reconstructing the mosaic glycolytic pathway of the anaerobic eukaryote Monocercomonoides. Eukaryotic Cell. 5: 2138-46. PMID 17071828 DOI: 10.1128/Ec.00258-06 |
0.355 |
|
| 2006 |
Richards TA, Dacks JB, Jenkinson JM, Thornton CR, Talbot NJ. Evolution of filamentous plant pathogens: gene exchange across eukaryotic kingdoms. Current Biology : Cb. 16: 1857-64. PMID 16979565 DOI: 10.1016/J.Cub.2006.07.052 |
0.407 |
|
| 2006 |
Richards TA, Dacks JB, Campbell SA, Blanchard JL, Foster PG, McLeod R, Roberts CW. Evolutionary origins of the eukaryotic shikimate pathway: gene fusions, horizontal gene transfer, and endosymbiotic replacements. Eukaryotic Cell. 5: 1517-31. PMID 16963634 DOI: 10.1128/Ec.00106-06 |
0.43 |
|
| 2006 |
Walker G, Dacks JB, Martin Embley T. Ultrastructural description of Breviata anathema, n. gen., n. sp., the organism previously studied as "Mastigamoeba invertens". The Journal of Eukaryotic Microbiology. 53: 65-78. PMID 16579808 DOI: 10.1111/J.1550-7408.2005.00087.X |
0.369 |
|
| 2006 |
Dacks JB, Dyal PL, Embley TM, van der Giezen M. Hydrogenosomal succinyl-CoA synthetase from the rumen-dwelling fungus Neocallimastix patriciarum; an energy-producing enzyme of mitochondrial origin. Gene. 373: 75-82. PMID 16515848 DOI: 10.1016/J.Gene.2006.01.012 |
0.377 |
|
| 2005 |
DACKS JB, CARLTON J, HIRT RP, EMBLEY TM. Massive differential expansion of the Trichomonas vaginalis adaptin genomic complement The Journal of Eukaryotic Microbiology. 52: 7S-27S. DOI: 10.1111/J.1550-7408.2005.05202003_1_18.X |
0.482 |
|
| 2004 |
Dacks JB, Doolittle WF. Molecular and phylogenetic characterization of syntaxin genes from parasitic protozoa. Molecular and Biochemical Parasitology. 136: 123-36. PMID 15478792 DOI: 10.1016/J.Molbiopara.2004.02.014 |
0.612 |
|
| 2004 |
Inagaki Y, Simpson AGB, Dacks JB, Roger AJ. Phylogenetic artifacts can be caused by leucine, serine, and arginine codon usage heterogeneity: Dinoflagellate plastid origins as a case study Systematic Biology. 53: 582-593. PMID 15371248 DOI: 10.1080/10635150490468756 |
0.555 |
|
| 2003 |
Dacks JB, Davis LA, Sjögren AM, Andersson JO, Roger AJ, Doolittle WF. Evidence for Golgi bodies in proposed 'Golgi-lacking' lineages. Proceedings. Biological Sciences / the Royal Society. 270: S168-71. PMID 14667372 DOI: 10.1098/Rsbl.2003.0058 |
0.702 |
|
| 2003 |
Moriya S, Dacks JB, Takagi A, Noda S, Ohkuma M, Doolittle WF, Kudo T. Molecular phylogeny of three oxymonad genera: Pyrsonympha, Dinenympha and Oxymonas. The Journal of Eukaryotic Microbiology. 50: 190-7. PMID 12836875 DOI: 10.1111/J.1550-7408.2003.Tb00115.X |
0.576 |
|
| 2002 |
Simpson AG, Radek R, Dacks JB, O'Kelly CJ. How oxymonads lost their groove: an ultrastructural comparison of Monocercomonoides and excavate taxa. The Journal of Eukaryotic Microbiology. 49: 239-48. PMID 12120989 DOI: 10.1111/J.1550-7408.2002.Tb00529.X |
0.33 |
|
| 2002 |
Dacks JB, Marinets A, Ford Doolittle W, Cavalier-Smith T, Logsdon JM. Analyses of RNA Polymerase II genes from free-living protists: phylogeny, long branch attraction, and the eukaryotic big bang. Molecular Biology and Evolution. 19: 830-40. PMID 12032239 DOI: 10.1093/Oxfordjournals.Molbev.A004140 |
0.418 |
|
| 2002 |
Dacks JB, Doolittle WF. Novel syntaxin gene sequences from Giardia, Trypanosoma and algae: implications for the ancient evolution of the eukaryotic endomembrane system. Journal of Cell Science. 115: 1635-42. PMID 11950882 |
0.606 |
|
| 2001 |
Dacks JB, Doolittle WF. Reconstructing/deconstructing the earliest eukaryotes: how comparative genomics can help. Cell. 107: 419-25. PMID 11719183 DOI: 10.1016/S0092-8674(01)00584-0 |
0.587 |
|
| 2001 |
Dacks JB, Silberman JD, Simpson AG, Moriya S, Kudo T, Ohkuma M, Redfield RJ. Oxymonads are closely related to the excavate taxon Trimastix. Molecular Biology and Evolution. 18: 1034-44. PMID 11371592 DOI: 10.1093/Oxfordjournals.Molbev.A003875 |
0.439 |
|
| 2000 |
Inagaki Y, Dacks JB, Doolittle WF, Watanabe KI, Ohama T. Evolutionary relationship between dinoflagellates bearing obligate diatom endosymbionts: insight into tertiary endosymbiosis. International Journal of Systematic and Evolutionary Microbiology. 50: 2075-81. PMID 11155982 DOI: 10.1099/00207713-50-6-2075 |
0.587 |
|
| 1999 |
Dacks J, Roger AJ. The first sexual lineage and the relevance of facultative sex Journal of Molecular Evolution. 48: 779-783. PMID 10229582 DOI: 10.1007/Pl00013156 |
0.475 |
|
| 1999 |
Dacks JB, Kasinsky HE. Nuclear condensation in protozoan gametes and the evolution of anisogamy Comparative Biochemistry and Physiology - a Molecular and Integrative Physiology. 124: 287-295. DOI: 10.1016/S1095-6433(99)00117-8 |
0.345 |
|
| 1998 |
Dacks JB, Redfield RJ. Phylogenetic placement of Trichonympha. The Journal of Eukaryotic Microbiology. 45: 445-7. PMID 9703681 DOI: 10.1111/J.1550-7408.1998.Tb05097.X |
0.313 |
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