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Allen R. Buskirk, Ph.D. - Publications

Affiliations: 
2004 Harvard University, Cambridge, MA, United States 
Area:
The Chemistry of Molecular Evolution
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28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Campbell A, Esser HF, Maxwell Burroughs A, Berninghausen O, Aravind L, Becker T, Green R, Beckmann R, Buskirk AR. The RNA helicase HrpA rescues collided ribosomes in . Biorxiv : the Preprint Server For Biology. PMID 39314269 DOI: 10.1101/2024.09.11.612461  0.456
2024 Rosa-Mercado NA, Buskirk AR, Green R. Translation elongation inhibitors stabilize select short-lived transcripts. Rna (New York, N.Y.). PMID 39293933 DOI: 10.1261/rna.080138.124  0.364
2024 Takada H, Paternoga H, Fujiwara K, Nakamoto JA, Park EN, Dimitrova-Paternoga L, Beckert B, Saarma M, Tenson T, Buskirk AR, Atkinson GC, Chiba S, Wilson DN, Hauryliuk V. A role for the S4-domain containing protein YlmH in ribosome-associated quality control in Bacillus subtilis. Nucleic Acids Research. PMID 38811035 DOI: 10.1093/nar/gkae399  0.355
2024 Shao B, Yan J, Zhang J, Liu L, Chen Y, Buskirk AR. Riboformer: a deep learning framework for predicting context-dependent translation dynamics. Nature Communications. 15: 2011. PMID 38443396 DOI: 10.1038/s41467-024-46241-8  0.369
2023 Park EN, Mackens-Kiani T, Berhane R, Esser H, Erdenebat C, Burroughs AM, Berninghausen O, Aravind L, Beckmann R, Green R, Buskirk AR. B. subtilis MutS2 splits stalled ribosomes into subunits without mRNA cleavage. The Embo Journal. PMID 38177497 DOI: 10.1038/s44318-023-00010-3  0.322
2023 Zhao S, Cordes J, Caban KM, Götz MJ, Mackens-Kiani T, Veltri AJ, Sinha NK, Weickert P, Kaya S, Hewitt G, Nedialkova DD, Fröhlich T, Beckmann R, Buskirk AR, Green R, et al. RNF14-dependent atypical ubiquitylation promotes translation-coupled resolution of RNA-protein crosslinks. Molecular Cell. PMID 37951216 DOI: 10.1016/j.molcel.2023.10.012  0.484
2023 Park E, Mackens-Kiani T, Berhane R, Esser H, Erdenebat C, Burroughs AM, Berninghausen O, Aravind L, Beckmann R, Green R, Buskirk AR. MutS2 splits stalled ribosomes into subunits without mRNA cleavage. Biorxiv : the Preprint Server For Biology. PMID 37205477 DOI: 10.1101/2023.05.05.539626  0.359
2022 Saito K, Kratzat H, Campbell A, Buschauer R, Burroughs AM, Berninghausen O, Aravind L, Green R, Beckmann R, Buskirk AR. Ribosome collisions induce mRNA cleavage and ribosome rescue in bacteria. Nature. 603: 503-508. PMID 35264790 DOI: 10.1038/s41586-022-04416-7  0.393
2020 Saito K, Green R, Buskirk AR. Ribosome recycling is not critical for translational coupling in . Elife. 9. PMID 32965213 DOI: 10.7554/eLife.59974  0.314
2020 Gelsinger DR, Dallon E, Reddy R, Mohammad F, Buskirk AR, DiRuggiero J. Ribosome profiling in archaea reveals leaderless translation, novel translational initiation sites, and ribosome pausing at single codon resolution. Nucleic Acids Research. PMID 32382758 DOI: 10.1093/Nar/Gkaa304  0.373
2019 Tesina P, Lessen LN, Buschauer R, Cheng J, Wu CC, Berninghausen O, Buskirk AR, Becker T, Beckmann R, Green R. Molecular mechanism of translational stalling by inhibitory codon combinations and poly(A) tracts. The Embo Journal. e103365. PMID 31858614 DOI: 10.15252/Embj.2019103365  0.31
2019 Weaver J, Mohammad F, Buskirk AR, Storz G. Identifying Small Proteins by Ribosome Profiling with Stalled Initiation Complexes. Mbio. 10. PMID 30837344 DOI: 10.1128/Mbio.02819-18  0.367
2018 Buskirk AR. Toxins that Trash Translation. Molecular Cell. 70: 759-760. PMID 29883601 DOI: 10.1016/j.molcel.2018.05.027  0.436
2017 Schuller AP, Wu CC, Dever TE, Buskirk AR, Green R. eIF5A Functions Globally in Translation Elongation and Termination. Molecular Cell. PMID 28392174 DOI: 10.1016/J.Molcel.2017.03.003  0.324
2016 Hwang JY, Buskirk AR. A ribosome profiling study of mRNA cleavage by the endonuclease RelE. Nucleic Acids Research. PMID 27924019 DOI: 10.1093/nar/gkw944  0.31
2015 Woolstenhulme CJ, Guydosh NR, Green R, Buskirk AR. High-precision analysis of translational pausing by ribosome profiling in bacteria lacking EFP. Cell Reports. 11: 13-21. PMID 25843707 DOI: 10.1016/J.Celrep.2015.03.014  0.316
2014 Kurita D, Miller MR, Muto A, Buskirk AR, Himeno H. Rejection of tmRNA·SmpB after GTP hydrolysis by EF-Tu on ribosomes stalled on intact mRNA. Rna (New York, N.Y.). 20: 1706-14. PMID 25246654 DOI: 10.1261/rna.045773.114  0.415
2014 Miller MR, Buskirk AR. The SmpB C-terminal tail helps tmRNA to recognize and enter stalled ribosomes. Frontiers in Microbiology. 5: 462. PMID 25228900 DOI: 10.3389/fmicb.2014.00462  0.373
2014 Miller MR, Buskirk AR. An unusual mechanism for EF-Tu activation during tmRNA-mediated ribosome rescue. Rna (New York, N.Y.). 20: 228-35. PMID 24345396 DOI: 10.1261/rna.042226.113  0.37
2013 Gutierrez E, Shin BS, Woolstenhulme CJ, Kim JR, Saini P, Buskirk AR, Dever TE. eif5A promotes translation of polyproline motifs Molecular Cell. 51: 35-45. PMID 23727016 DOI: 10.1016/J.Molcel.2013.04.021  0.348
2011 Miller MR, Liu Z, Cazier DJ, Gebhard GM, Herron SR, Zaher HS, Green R, Buskirk AR. The role of SmpB and the ribosomal decoding center in licensing tmRNA entry into stalled ribosomes. Rna (New York, N.Y.). 17: 1727-36. PMID 21795410 DOI: 10.1261/Rna.2821711  0.376
2010 Crandall J, Rodriguez-Lopez M, Pfeiffer M, Mortensen B, Buskirk A. rRNA mutations that inhibit transfer-messenger RNA activity on stalled ribosomes. Journal of Bacteriology. 192: 553-9. PMID 19897649 DOI: 10.1128/JB.01178-09  0.446
2009 Watts T, Cazier D, Healey D, Buskirk A. SmpB contributes to reading frame selection in the translation of transfer-messenger RNA. Journal of Molecular Biology. 391: 275-81. PMID 19540849 DOI: 10.1016/j.jmb.2009.06.037  0.428
2006 Tanner DR, Dewey JD, Miller MR, Buskirk AR. Genetic analysis of the structure and function of transfer messenger RNA pseudoknot 1. The Journal of Biological Chemistry. 281: 10561-6. PMID 16481313 DOI: 10.1074/jbc.M600167200  0.43
2005 Buskirk AR, Liu DR. Creating small-molecule-dependent switches to modulate biological functions. Chemistry & Biology. 12: 151-61. PMID 15734643 DOI: 10.1016/J.Chembiol.2004.11.012  0.492
2004 Buskirk AR, Landrigan A, Liu DR. Engineering a ligand-dependent RNA transcriptional activator. Chemistry & Biology. 11: 1157-63. PMID 15324817 DOI: 10.1016/J.Chembiol.2004.05.017  0.726
2004 Buskirk AR, Ong YC, Gartner ZJ, Liu DR. Directed evolution of ligand dependence: Small-molecule-activated protein splicing Proceedings of the National Academy of Sciences of the United States of America. 101: 10505-10510. PMID 15247421 DOI: 10.1073/Pnas.0402762101  0.608
2003 Buskirk AR, Kehayova PD, Landrigan A, Liu DR. In vivo evolution of an RNA-based transcriptional activator. Chemistry & Biology. 10: 533-40. PMID 12837386 DOI: 10.1016/S1074-5521(03)00109-1  0.358
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