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Suzanne S. Sindi, Ph.D. - Publications

Affiliations: 
2006 University of Maryland, College Park, College Park, MD 
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22 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Lemarre P, Pujo-Menjouet L, Sindi SS. A unifying model for the propagation of prion proteins in yeast brings insight into the [PSI+] prion. Plos Computational Biology. 16: e1007647. PMID 32453794 DOI: 10.1371/Journal.Pcbi.1007647  0.394
2020 Villali J, Dark J, Brechtel TM, Pei F, Sindi SS, Serio TR. Nucleation seed size determines amyloid clearance and establishes a barrier to prion appearance in yeast. Nature Structural & Molecular Biology. PMID 32367069 DOI: 10.1038/S41594-020-0416-6  0.342
2020 Banwarth-Kuhn M, Sindi SS. How and Why to Build a Mathematical Model: A Case Study Using Prion Aggregation. The Journal of Biological Chemistry. PMID 32005659 DOI: 10.1074/Jbc.Rev119.009851  0.341
2018 Lemarre P, Pujo-Menjouet L, Sindi SS. Generalizing a mathematical model of prion aggregation allows strain coexistence and co-stability by including a novel misfolded species. Journal of Mathematical Biology. PMID 30116882 DOI: 10.1007/S00285-018-1280-4  0.33
2018 Link KG, Stobb MT, Di Paola J, Neeves KB, Fogelson AL, Sindi SS, Leiderman K. A local and global sensitivity analysis of a mathematical model of coagulation and platelet deposition under flow. Plos One. 13: e0200917. PMID 30048479 DOI: 10.1371/Journal.Pone.0200917  0.325
2018 Banuelos M, Sindi S. Modeling transposable element dynamics with fragmentation equations. Mathematical Biosciences. 302: 46-66. PMID 29787745 DOI: 10.1016/J.Mbs.2018.05.009  0.363
2017 Pei F, DiSalvo S, Sindi SS, Serio TR. A dominant-negative mutant inhibits multiple prion variants through a common mechanism. Plos Genetics. 13: e1007085. PMID 29084237 DOI: 10.1371/Journal.Pgen.1007085  0.332
2017 Banks HT, Flores KB, Langlois CR, Serio TR, Sindi SS. Estimating the rate of prion aggregate amplification in yeast with a generation and structured population model Inverse Problems in Science and Engineering. 26: 257-279. DOI: 10.1080/17415977.2017.1316498  0.343
2016 Langlois CR, Pei F, Sindi SS, Serio TR. Distinct Prion Domain Sequences Ensure Efficient Amyloid Propagation by Promoting Chaperone Binding or Processing In Vivo. Plos Genetics. 12: e1006417. PMID 27814358 DOI: 10.1371/Journal.Pgen.1006417  0.335
2016 Davis JK, Sindi SS. Initial condition of stochastic self-assembly. Physical Review. E. 93: 022109. PMID 26986290 DOI: 10.1103/Physreve.93.022109  0.354
2016 Banks H, Flores KB, Sindi SS. On analytical and numerical approaches to division and label structured population models Applied Mathematics Letters. 60: 81-88. DOI: 10.1016/J.Aml.2016.04.009  0.311
2015 Davis JK, Sindi SS. A Study in Nucleated Polymerization Models of Protein Aggregation. Applied Mathematics Letters. 40: 97-101. PMID 31692931 DOI: 10.1016/J.Aml.2014.09.007  0.367
2015 Davis JK, Sindi SS. A mathematical model of the dynamics of prion aggregates with chaperone-mediated fragmentation. Journal of Mathematical Biology. PMID 26297259 DOI: 10.1007/S00285-015-0921-0  0.386
2014 Ritz A, Bashir A, Sindi S, Hsu D, Hajirasouliha I, Raphael BJ. Characterization of structural variants with single molecule and hybrid sequencing approaches. Bioinformatics (Oxford, England). 30: 3458-66. PMID 25355789 DOI: 10.1093/Bioinformatics/Btu714  0.302
2014 Pezza JA, Villali J, Sindi SS, Serio TR. Amyloid-associated activity contributes to the severity and toxicity of a prion phenotype. Nature Communications. 5: 4384. PMID 25023996 DOI: 10.1038/Ncomms5384  0.352
2014 Olofsson P, Sindi SS. A Crump-Mode-Jagers Branching Process Model of Prion Loss in Yeast Journal of Applied Probability. 51: 453-465. DOI: 10.1239/Jap/1402578636  0.387
2013 Sindi SS, Olofsson P. A Discrete-Time Branching Process Model of Yeast Prion Curing Curves. Mathematical Population Studies. 20: 1-13. PMID 30287982 DOI: 10.1080/08898480.2013.748566  0.36
2012 Sindi SS, Onal S, Peng LC, Wu HT, Raphael BJ. An integrative probabilistic model for identification of structural variation in sequencing data. Genome Biology. 13: R22. PMID 22452995 DOI: 10.1186/Gb-2012-13-3-R22  0.305
2010 Derdowski A, Sindi SS, Klaips CL, DiSalvo S, Serio TR. A size threshold limits prion transmission and establishes phenotypic diversity. Science (New York, N.Y.). 330: 680-3. PMID 21030659 DOI: 10.1126/Science.1197785  0.381
2009 Sindi SS, Serio TR. Prion dynamics and the quest for the genetic determinant in protein-only inheritance. Current Opinion in Microbiology. 12: 623-30. PMID 19864176 DOI: 10.1016/J.Mib.2009.09.003  0.336
2009 Sindi S, Helman E, Bashir A, Raphael BJ. A geometric approach for classification and comparison of structural variants. Bioinformatics (Oxford, England). 25: i222-30. PMID 19477992 DOI: 10.1093/Bioinformatics/Btp208  0.316
2008 Sindi SS, Hunt BR, Yorke JA. Duplication count distributions in DNA sequences. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 78: 061912. PMID 19256873 DOI: 10.1103/Physreve.78.061912  0.478
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