John M. Lopes - Publications

Loyola University Chicago, Chicago, IL, United States 
Molecular Biology, Genetics, Microbiology Biology

42 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Sang H, Hulvey J, Popko JT, Lopes J, Swaminathan A, Chang T, Jung G. A pleiotropic drug resistance transporter is involved in reduced sensitivity to multiple fungicide classes in Sclerotinia homoeocarpa (F.T. Bennett). Molecular Plant Pathology. 16: 251-61. PMID 25040464 DOI: 10.1111/Mpp.12174  0.301
2014 Salas-Santiago B, Lopes JM. Saccharomyces cerevisiae essential genes with an Opi- phenotype. G3 (Bethesda, Md.). 4: 761-7. PMID 24558266 DOI: 10.1534/G3.113.010140  0.506
2013 Shetty A, Swaminathan A, Lopes JM. Transcription regulation of a yeast gene from a downstream location. Journal of Molecular Biology. 425: 457-65. PMID 23174187 DOI: 10.1016/J.Jmb.2012.11.018  0.681
2012 He Y, Swaminathan A, Lopes JM. Transcription regulation of the Saccharomyces cerevisiae PHO5 gene by the Ino2p and Ino4p basic helix-loop-helix proteins. Molecular Microbiology. 83: 395-407. PMID 22182244 DOI: 10.1111/J.1365-2958.2011.07941.X  0.589
2010 Shetty A, Lopes JM. Derepression of INO1 transcription requires cooperation between the Ino2p-Ino4p heterodimer and Cbf1p and recruitment of the ISW2 chromatin-remodeling complex. Eukaryotic Cell. 9: 1845-55. PMID 20935143 DOI: 10.1128/Ec.00144-10  0.491
2010 Chen L, Lopes JM. Multiple bHLH proteins regulate CIT2 expression in Saccharomyces cerevisiae. Yeast (Chichester, England). 27: 345-59. PMID 20162531 DOI: 10.1002/Yea.1757  0.592
2009 Jani NM, Lopes JM. Regulated transcription of the Saccharomyces cerevisiae phosphatidylinositol biosynthetic gene, PIS1, yields pleiotropic effects on phospholipid synthesis. Fems Yeast Research. 9: 552-64. PMID 19456874 DOI: 10.1111/J.1567-1364.2009.00514.X  0.633
2008 Jani NM, Lopes JM. Transcription regulation of the Saccharomyces cerevisiae PIS1 gene by inositol and the pleiotropic regulator, Ume6p. Molecular Microbiology. 70: 1529-39. PMID 19019152 DOI: 10.1111/J.1365-2958.2008.06506.X  0.669
2007 Chen M, Lopes JM. Multiple basic helix-loop-helix proteins regulate expression of the ENO1 gene of Saccharomyces cerevisiae. Eukaryotic Cell. 6: 786-96. PMID 17351075 DOI: 10.1128/Ec.00383-06  0.558
2007 Chen M, Hancock LC, Lopes JM. Transcriptional regulation of yeast phospholipid biosynthetic genes. Biochimica Et Biophysica Acta. 1771: 310-21. PMID 16854618 DOI: 10.1016/J.Bbalip.2006.05.017  0.653
2006 Hancock LC, Behta RP, Lopes JM. Genomic analysis of the Opi- phenotype. Genetics. 173: 621-34. PMID 16582425 DOI: 10.1534/Genetics.106.057489  0.511
2006 Kaadige MR, Lopes JM. Analysis of Opi1p repressor mutants. Current Genetics. 49: 30-8. PMID 16322993 DOI: 10.1007/S00294-005-0021-6  0.411
2005 Gardocki ME, Jani N, Lopes JM. Phosphatidylinositol biosynthesis: biochemistry and regulation. Biochimica Et Biophysica Acta. 1735: 89-100. PMID 15967713 DOI: 10.1016/J.Bbalip.2005.05.006  0.537
2005 Gardocki ME, Bakewell M, Kamath D, Robinson K, Borovicka K, Lopes JM. Genomic analysis of PIS1 gene expression. Eukaryotic Cell. 4: 604-14. PMID 15755922 DOI: 10.1128/Ec.4.3.604-614.2005  0.681
2004 Gardenour KR, Levy J, Lopes JM. Identification of novel dominant INO2c mutants with an Opi- phenotype. Molecular Microbiology. 52: 1271-80. PMID 15165231 DOI: 10.1111/J.1365-2958.2004.04069.X  0.538
2003 Gardocki ME, Lopes JM. Expression of the yeast PIS1 gene requires multiple regulatory elements including a Rox1p binding site. The Journal of Biological Chemistry. 278: 38646-52. PMID 12890676 DOI: 10.1074/Jbc.M305251200  0.701
2003 Kaadige MR, Lopes JM. Opi1p, Ume6p and Sin3p control expression from the promoter of the INO2 regulatory gene via a novel regulatory cascade. Molecular Microbiology. 48: 823-32. PMID 12694624 DOI: 10.1046/J.1365-2958.2003.03472.X  0.599
2001 Miller LL, Lopes JM. Over-expression of the INO2 regulatory gene alters regulation of an INO1-lacZ reporter gene but does not affect regulation of INO1 expression. Current Genetics. 39: 77-82. PMID 11405099 DOI: 10.1007/S002940100186  0.684
2001 Eiznhamer DA, Ashburner BP, Jackson JC, Gardenour KR, Lopes JM. Expression of the INO2 regulatory gene of Saccharomyces cerevisiae is controlled by positive and negative promoter elements and an upstream open reading frame. Molecular Microbiology. 39: 1395-405. PMID 11251853 DOI: 10.1111/J.1365-2958.2001.02330.X  0.646
2000 Robinson KA, Koepke JI, Kharodawala M, Lopes JM. A network of yeast basic helix-loop-helix interactions. Nucleic Acids Research. 28: 4460-6. PMID 11071933 DOI: 10.1093/Nar/28.22.4460  0.422
2000 Elkhaimi M, Kaadige MR, Kamath D, Jackson JC, Biliran H, Lopes JM. Combinatorial regulation of phospholipid biosynthetic gene expression by the UME6, SIN3 and RPD3 genes. Nucleic Acids Research. 28: 3160-7. PMID 10931932 DOI: 10.1093/Nar/28.16.3160  0.657
2000 Robinson KA, Lopes JM. The promoter of the yeast INO4 regulatory gene: a model of the simplest yeast promoter. Journal of Bacteriology. 182: 2746-52. PMID 10781542 DOI: 10.1128/Jb.182.10.2746-2752.2000  0.705
2000 Robinson KA, Lopes JM. SURVEY AND SUMMARY: Saccharomyces cerevisiae basic helix-loop-helix proteins regulate diverse biological processes. Nucleic Acids Research. 28: 1499-505. PMID 10710415 DOI: 10.1093/Nar/28.7.1499  0.375
1999 Grauslund M, Lopes JM, Rønnow B. Expression of GUT1, which encodes glycerol kinase in Saccharomyces cerevisiae, is controlled by the positive regulators Adr1p, Ino2p and Ino4p and the negative regulator Opi1p in a carbon source-dependent fashion. Nucleic Acids Research. 27: 4391-8. PMID 10536147 DOI: 10.1093/Nar/27.22.4391  0.524
1997 Koipally J, Ashburner BP, Bachhawat N, Gill T, Hung G, Henry SA, Lopes JM. Functional characterization of the repeated UASINO element in the promoters of the INO1 and CHO2 genes of yeast. Yeast (Chichester, England). 12: 653-65. PMID 8810039 DOI: 10.1002/(Sici)1097-0061(19960615)12:7<653::Aid-Yea953>3.0.Co;2-T  0.567
1996 Anderson MS, Lopes JM. Carbon source regulation of PIS1 gene expression in Saccharomyces cerevisiae involves the MCM1 gene and the two-component regulatory gene, SLN1. The Journal of Biological Chemistry. 271: 26596-601. PMID 8900132 DOI: 10.1074/Jbc.271.43.26596  0.661
1996 Jackson JC, Lopes JM. The yeast UME6 gene is required for both negative and positive transcriptional regulation of phospholipid biosynthetic gene expression. Nucleic Acids Research. 24: 1322-9. PMID 8614637 DOI: 10.1093/Nar/24.7.1322  0.683
1996 Greenberg ML, Lopes JM. Genetic regulation of phospholipid biosynthesis in Saccharomyces cerevisiae. Microbiological Reviews. 60: 1-20. DOI: 10.1128/Mmbr.60.1.1-20.1996  0.606
1995 Jackson JC, Lopes JM. A cDNA from Schizosaccharomyces pombe encoding a putative enolase. Gene. 154: 109-13. PMID 7867936 DOI: 10.1016/0378-1119(94)00877-U  0.393
1995 Ashburner BP, Lopes JM. Autoregulated expression of the yeast INO2 and INO4 helix-loop-helix activator genes effects cooperative regulation on their target genes. Molecular and Cellular Biology. 15: 1709-15. PMID 7862162 DOI: 10.1128/Mcb.15.3.1709  0.7
1995 Anderson MS, Kanipes MI, Jackson JC, Yates J, Henry SA, Lopes JM. Physical map locations of the phospholipid biosynthetic structural and regulatory genes of Saccharomyces cerevisiae. Yeast (Chichester, England). 11: 187-90. PMID 7732728 DOI: 10.1002/Yea.320110210  0.494
1995 Ashburner BP, Lopes JM. Regulation of yeast phospholipid biosynthetic gene expression in response to inositol involves two superimposed mechanisms. Proceedings of the National Academy of Sciences of the United States of America. 92: 9722-6. PMID 7568205 DOI: 10.1073/Pnas.92.21.9722  0.651
1993 Lopes JM, Schulze KL, Yates JW, Hirsch JP, Henry SA. The INO1 promoter of Saccharomyces cerevisiae includes an upstream repressor sequence (URS1) common to a diverse set of yeast genes. Journal of Bacteriology. 175: 4235-8. PMID 8320238 DOI: 10.1128/Jb.175.13.4235-4238.1993  0.628
1992 Swede MJ, Hudak KA, Lopes JM, Henry SA. Strategies for generating phospholipid synthesis mutants in yeast Methods in Enzymology. 209: 21-34. PMID 1495411 DOI: 10.1016/0076-6879(92)09005-N  0.333
1992 Bailis AM, Lopes JM, Kohlwein SD, Henry SA. Cis and trans regulatory elements required for regulation of the CHO1 gene of Saccharomyces cerevisiae. Nucleic Acids Research. 20: 1411-8. PMID 1313970 DOI: 10.1093/Nar/20.6.1411  0.667
1991 Lopes JM, Hirsch JP, Chorgo PA, Schulze KL, Henry SA. Analysis of sequences in the INO1 promoter that are involved in its regulation by phospholipid precursors. Nucleic Acids Research. 19: 1687-93. PMID 2027776 DOI: 10.1093/Nar/19.7.1687  0.576
1991 White MJ, Lopes JM, Henry SA. Inositol metabolism in yeasts. Advances in Microbial Physiology. 32: 1-51. PMID 1882726 DOI: 10.1016/S0065-2911(08)60004-1  0.305
1991 Lopes JM, Henry SA. Interaction of trans and cis regulatory elements in the INO1 promoter of Saccharomyces cerevisiae. Nucleic Acids Research. 19: 3987-94. PMID 1650460 DOI: 10.1093/Nar/19.14.3987  0.477
1989 Lopes JM, Soliman N, Smith PK, Lawther RP. Transcriptional polarity enhances the contribution of the internal promoter, ilvEp, in the expression of the ilvGMEDA operon in wild-type Escherichia coli K12 Molecular Microbiology. 3: 1039-1051. PMID 2691839 DOI: 10.1111/j.1365-2958.1989.tb00254.x  0.431
1989 Lopes JM, Lawther RP. Physical identification of an internal promoter, ilvAp, in the distal portion of the ilvGMEDA operon. Gene. 76: 255-69. PMID 2473940 DOI: 10.1016/0378-1119(89)90166-2  0.45
1987 Lawther RP, Wek RC, Lopes JM, Pereira R, Taillon BE, Hatfield GW. The complete nucleotide sequence of the ilvGMEDA operon of Escherichia coli K-12. Nucleic Acids Research. 15: 2137-55. PMID 3550695 DOI: 10.1093/nar/15.5.2137  0.38
1986 Lopes JM, Lawther RP. Analysis and comparison of the internal promoter, pE, of the ilvGMEDA operons from Escherichia coli K-12 and Salmonella typhimurium. Nucleic Acids Research. 14: 2779-98. PMID 3008097 DOI: 10.1093/nar/14.6.2779  0.402
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