Matthew H. Cordes - Publications

Affiliations: 
Biochemistry & Molecular Biophysics University of Arizona, Tucson, AZ 
Area:
Biochemistry

24 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Kumirov VK, Dykstra EM, Cordes MH. Solution Structure of XPH2, a Hybrid Sequence of Xfaso 1 and Pfl 6, Two Cro Proteins With Different Folds Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb5W8Z/Pdb  0.615
2018 Kumirov VK, Dykstra EM, Cordes MH. Solution Structure of XPH1, a Hybrid Sequence of Xfaso 1 and Pfl 6, Two Cro Proteins With Different Folds Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb5W8Y/Pdb  0.615
2015 Andreatta ME, Levine JA, Foy SG, Guzman LD, Kosinski LJ, Cordes MH, Masel J. The recent de novo origin of protein C-termini. Genome Biology and Evolution. PMID 26002864 DOI: 10.1093/Gbe/Evv098  0.445
2015 Eaton KV, Anderson WJ, Dubrava MS, Kumirov VK, Dykstra EM, Cordes MH. Studying protein fold evolution with hybrids of differently folded homologs. Protein Engineering, Design & Selection : Peds. 28: 241-50. PMID 25991865 DOI: 10.1093/protein/gzv027  0.469
2013 Stewart KL, Nelson MR, Eaton KV, Anderson WJ, Cordes MH. A role for indels in the evolution of Cro protein folds. Proteins. 81: 1988-96. PMID 23843258 DOI: 10.1002/Prot.24358  0.721
2013 Stewart KL, Dodds ED, Wysocki VH, Cordes MH. A polymetamorphic protein. Protein Science : a Publication of the Protein Society. 22: 641-9. PMID 23471712 DOI: 10.1002/Pro.2248  0.675
2012 Cordes MH, Stewart KL. The porous borders of the protein world. Structure (London, England : 1993). 20: 199-200. PMID 22325767 DOI: 10.1016/J.Str.2012.01.015  0.644
2011 Hall BM, Vaughn EE, Begaye AR, Cordes MH. Reengineering Cro protein functional specificity with an evolutionary code. Journal of Molecular Biology. 413: 914-28. PMID 21945527 DOI: 10.1016/J.Jmb.2011.08.056  0.535
2011 Anderson WJ, Van Dorn LO, Ingram WM, Cordes MH. Evolutionary bridges to new protein folds: design of C-terminal Cro protein chameleon sequences. Protein Engineering, Design & Selection : Peds. 24: 765-71. PMID 21676898 DOI: 10.1093/protein/gzr027  0.533
2011 Dodds ED, Blackwell AE, Jones CM, Holso KL, O'Brien DJ, Cordes MH, Wysocki VH. Determinants of gas-phase disassembly behavior in homodimeric protein complexes with related yet divergent structures. Analytical Chemistry. 83: 3881-9. PMID 21486017 DOI: 10.1021/Ac2003906  0.425
2008 Narra HP, Cordes MH, Ochman H. Structural features and the persistence of acquired proteins. Proteomics. 8: 4772-81. PMID 18924109 DOI: 10.1002/Pmic.200800061  0.356
2008 Dubrava MS, Ingram WM, Roberts SA, Weichsel A, Montfort WR, Cordes MH. N15 Cro and lambda Cro: orthologous DNA-binding domains with completely different but equally effective homodimer interfaces. Protein Science : a Publication of the Protein Society. 17: 803-12. PMID 18369196 DOI: 10.1110/Ps.073330808  0.421
2008 Roessler CG, Hall BM, Anderson WJ, Ingram WM, Roberts SA, Montfort WR, Cordes MH. Transitive homology-guided structural studies lead to discovery of Cro proteins with 40% sequence identity but different folds. Proceedings of the National Academy of Sciences of the United States of America. 105: 2343-8. PMID 18227506 DOI: 10.1073/Pnas.0711589105  0.55
2008 Hall BM, Roberts SA, Heroux A, Cordes MH. Two structures of a lambda Cro variant highlight dimer flexibility but disfavor major dimer distortions upon specific binding of cognate DNA. Journal of Molecular Biology. 375: 802-11. PMID 18054042 DOI: 10.1016/J.Jmb.2007.10.082  0.586
2006 Van Dorn LO, Newlove T, Chang S, Ingram WM, Cordes MH. Relationship between sequence determinants of stability for two natural homologous proteins with different folds. Biochemistry. 45: 10542-53. PMID 16939206 DOI: 10.1021/bi060853p  0.488
2006 Patki AU, Hausrath AC, Cordes MH. High polar content of long buried blocks of sequence in protein domains suggests selection against amyloidogenic non-polar sequences. Journal of Molecular Biology. 362: 800-9. PMID 16935301 DOI: 10.1016/j.jmb.2006.07.055  0.513
2006 Newlove T, Atkinson KR, Van Dorn LO, Cordes MH. A trade between similar but nonequivalent intrasubunit and intersubunit contacts in Cro dimer evolution. Biochemistry. 45: 6379-91. PMID 16700549 DOI: 10.1021/Bi052541C  0.305
2005 McKnight CJ, Cordes MH. Networking at the Protein Society symposium. Nature Chemical Biology. 1: 239-42. PMID 16408046 DOI: 10.1038/nchembio1005-239  0.339
2005 Anderson TA, Cordes MH, Sauer RT. Sequence determinants of a conformational switch in a protein structure. Proceedings of the National Academy of Sciences of the United States of America. 102: 18344-9. PMID 16344489 DOI: 10.1073/Pnas.0509349102  0.483
2005 Hall BM, Lefevre KR, Cordes MH. Sequence correlations between Cro recognition helices and cognate O(R) consensus half-sites suggest conserved rules of protein-DNA recognition. Journal of Molecular Biology. 350: 667-81. PMID 15967464 DOI: 10.1016/J.Jmb.2005.05.025  0.555
2005 Binford GJ, Cordes MH, Wells MA. Sphingomyelinase D from venoms of Loxosceles spiders: evolutionary insights from cDNA sequences and gene structure. Toxicon : Official Journal of the International Society On Toxinology. 45: 547-60. PMID 15777950 DOI: 10.1016/J.Toxicon.2004.11.011  0.439
2004 Newlove T, Konieczka JH, Cordes MH. Secondary structure switching in Cro protein evolution. Structure (London, England : 1993). 12: 569-81. PMID 15062080 DOI: 10.1016/J.Str.2004.02.024  0.498
2004 Newlove T, Konieczka JH, Cordes MH. Solution structure of P22 Cro Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb1Rzs/Pdb  0.32
2003 LeFevre KR, Cordes MH. Retroevolution of lambda Cro toward a stable monomer. Proceedings of the National Academy of Sciences of the United States of America. 100: 2345-50. PMID 12598646 DOI: 10.1073/pnas.0537925100  0.396
Show low-probability matches.