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Zhenfeng Liu, Ph.D. - Publications

Affiliations: 
2012 Pennsylvania State University, State College, PA, United States 
Area:
Microbiology Biology, Bioinformatics Biology, Biochemistry
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28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Liu Z, Mesrop LY, Hu SK, Caron DA. Transcriptome of Thalassicolla nucleata Holobiont Reveals Details of a Radiolarian Symbiotic Relationship Frontiers in Marine Science. 6. DOI: 10.3389/Fmars.2019.00284  0.364
2018 Hu SK, Liu Z, Alexander H, Campbell V, Connell PE, Dyhrman ST, Heidelberg KB, Caron DA. Shifting metabolic priorities among key protistan taxa within and below the euphotic zone. Environmental Microbiology. PMID 29708635 DOI: 10.1111/1462-2920.14259  0.322
2018 Lie AAY, Liu Z, Terrado R, Tatters AO, Heidelberg KB, Caron DA. A tale of two mixotrophic chrysophytes: Insights into the metabolisms of two Ochromonas species (Chrysophyceae) through a comparison of gene expression. Plos One. 13: e0192439. PMID 29438384 DOI: 10.1371/Journal.Pone.0192439  0.382
2017 Therien JB, Artz JH, Poudel S, Hamilton TL, Liu Z, Noone SM, Adams MWW, King PW, Bryant DA, Boyd ES, Peters JW. The Physiological Functions and Structural Determinants of Catalytic Bias in the [FeFe]-Hydrogenases CpI and CpII of Clostridium pasteurianum Strain W5. Frontiers in Microbiology. 8: 1305. PMID 28747909 DOI: 10.3389/Fmicb.2017.01305  0.542
2017 Tank M, Liu Z, Frigaard NU, Tomsho LP, Schuster SC, Bryant DA. Complete Genome Sequence of the Photoautotrophic and Bacteriochlorophyll e-Synthesizing Green Sulfur Bacterium Chlorobaculum limnaeum DSM 1677(T). Genome Announcements. 5. PMID 28619803 DOI: 10.1128/Genomea.00529-17  0.528
2017 Lie AA, Liu Z, Terrado R, Tatters AO, Heidelberg KB, Caron DA. Effect of light and prey availability on gene expression of the mixotrophic chrysophyte, Ochromonas sp. Bmc Genomics. 18: 163. PMID 28196482 DOI: 10.1186/S12864-017-3549-1  0.303
2017 Liu Z, Hu SK, Campbell V, Tatters AO, Heidelberg KB, Caron DA. Single-cell transcriptomics of small microbial eukaryotes: limitations and potential. The Isme Journal. PMID 28060364 DOI: 10.1038/Ismej.2016.190  0.305
2016 Nabhan S, Bunk B, Spröer C, Liu Z, Bryant DA, Overmann J. Genome Sequence of Prosthecochloris sp. Strain CIB 2401 of the Phylum Chlorobi. Genome Announcements. 4. PMID 27811102 DOI: 10.1128/Genomea.01222-16  0.533
2016 Pérez AA, Liu Z, Rodionov DA, Li Z, Bryant DA. Complementation of Cobalamin Auxotrophy in Synechococcus sp. strain PCC 7002 and Validation of a Putative Cobalamin Riboswitch in Vivo. Journal of Bacteriology. PMID 27457714 DOI: 10.1128/Jb.00475-16  0.497
2016 Llorens-Marès T, Liu Z, Allen LZ, Rusch DB, Craig MT, Dupont CL, Bryant DA, Casamayor EO. Speciation and ecological success in dimly lit waters: horizontal gene transfer in a green sulfur bacteria bloom unveiled by metagenomic assembly. The Isme Journal. PMID 27392085 DOI: 10.1038/Ismej.2016.93  0.572
2016 Liu Z, Campbell V, Heidelberg KB, Caron DA. Gene expression characterizes different nutritional strategies among three mixotrophic protists. Fems Microbiology Ecology. PMID 27194617 DOI: 10.1093/Femsec/Fiw106  0.404
2016 Hu SK, Campbell V, Connell P, Gellene AG, Liu Z, Terrado R, Caron DA. Protistan diversity and activity inferred from RNA and DNA at a coastal ocean site in the eastern North Pacific. Fems Microbiology Ecology. PMID 26940085 DOI: 10.1093/Femsec/Fiw050  0.392
2015 Liu Z, Koid AE, Terrado R, Campbell V, Caron DA, Heidelberg KB. Changes in gene expression of Prymnesium parvum induced by nitrogen and phosphorus limitation. Frontiers in Microbiology. 6: 631. PMID 26157435 DOI: 10.3389/Fmicb.2015.00631  0.346
2015 Liu Z, Jones AC, Campbell V, Hambright KD, Heidelberg KB, Caron DA. Gene expression in the mixotrophic prymnesiophyte, Prymnesium parvum, responds to prey availability. Frontiers in Microbiology. 6: 319. PMID 25941521 DOI: 10.3389/Fmicb.2015.00319  0.326
2015 Hu SK, Liu Z, Lie AA, Countway PD, Kim DY, Jones AC, Gast RJ, Cary SC, Sherr EB, Sherr BF, Caron DA. Estimating Protistan Diversity Using High-Throughput Sequencing. The Journal of Eukaryotic Microbiology. PMID 25851049 DOI: 10.1111/Jeu.12217  0.355
2014 Koid AE, Liu Z, Terrado R, Jones AC, Caron DA, Heidelberg KB. Comparative transcriptome analysis of four prymnesiophyte algae. Plos One. 9: e97801. PMID 24926657 DOI: 10.1371/Journal.Pone.0097801  0.417
2014 Lie AA, Liu Z, Hu SK, Jones AC, Kim DY, Countway PD, Amaral-Zettler LA, Cary SC, Sherr EB, Sherr BF, Gast RJ, Caron DA. Investigating microbial eukaryotic diversity from a global census: insights from a comparison of pyrotag and full-length sequences of 18S rRNA genes. Applied and Environmental Microbiology. 80: 4363-73. PMID 24814788 DOI: 10.1128/Aem.00057-14  0.353
2014 Stolyar S, Liu Z, Thiel V, Tomsho LP, Pinel N, Nelson WC, Lindemann SR, Romine MF, Haruta S, Schuster SC, Bryant DA, Fredrickson JK. Genome Sequence of the Thermophilic Cyanobacterium Thermosynechococcus sp. Strain NK55a. Genome Announcements. 2. PMID 24482507 DOI: 10.1128/Genomea.01060-13  0.58
2013 Liu Z, Müller J, Li T, Alvey RM, Vogl K, Frigaard NU, Rockwell NC, Boyd ES, Tomsho LP, Schuster SC, Henke P, Rohde M, Overmann J, Bryant DA. Genomic analysis reveals key aspects of prokaryotic symbiosis in the phototrophic consortium "Chlorochromatium aggregatum". Genome Biology. 14: R127. PMID 24267588 DOI: 10.1186/Gb-2013-14-11-R127  0.568
2013 Klatt CG, Liu Z, Ludwig M, Kühl M, Jensen SI, Bryant DA, Ward DM. Temporal metatranscriptomic patterning in phototrophic Chloroflexi inhabiting a microbial mat in a geothermal spring. The Isme Journal. 7: 1775-89. PMID 23575369 DOI: 10.1038/Ismej.2013.52  0.557
2013 Bryant DA, Liu Z. Green Bacteria. Insights into Green Bacterial Evolution through Genomic Analyses Advances in Botanical Research. 66: 99-150. DOI: 10.1016/B978-0-12-397923-0.00004-7  0.558
2012 Liu Z, Frigaard NU, Vogl K, Iino T, Ohkuma M, Overmann J, Bryant DA. Complete Genome of Ignavibacterium album, a Metabolically Versatile, Flagellated, Facultative Anaerobe from the Phylum Chlorobi. Frontiers in Microbiology. 3: 185. PMID 22661972 DOI: 10.3389/Fmicb.2012.00185  0.588
2012 Liu Z, Klatt CG, Ludwig M, Rusch DB, Jensen SI, Kühl M, Ward DM, Bryant DA. 'Candidatus Thermochlorobacter aerophilum:' an aerobic chlorophotoheterotrophic member of the phylum Chlorobi defined by metagenomics and metatranscriptomics. The Isme Journal. 6: 1869-82. PMID 22456447 DOI: 10.1038/Ismej.2012.24  0.495
2012 Garcia Costas AM, Liu Z, Tomsho LP, Schuster SC, Ward DM, Bryant DA. Complete genome of Candidatus Chloracidobacterium thermophilum, a chlorophyll-based photoheterotroph belonging to the phylum Acidobacteria. Environmental Microbiology. 14: 177-90. PMID 21951563 DOI: 10.1111/J.1462-2920.2011.02592.X  0.563
2011 Liu Z, Bryant DA. Multiple types of 8-vinyl reductases for (bacterio)chlorophyll biosynthesis occur in many green sulfur bacteria. Journal of Bacteriology. 193: 4996-8. PMID 21764919 DOI: 10.1128/Jb.05520-11  0.568
2011 Liu Z, Klatt CG, Wood JM, Rusch DB, Ludwig M, Wittekindt N, Tomsho LP, Schuster SC, Ward DM, Bryant DA. Metatranscriptomic analyses of chlorophototrophs of a hot-spring microbial mat. The Isme Journal. 5: 1279-90. PMID 21697962 DOI: 10.1038/Ismej.2011.37  0.556
2011 Liu Z, Bryant DA. Identification of a gene essential for the first committed step in the biosynthesis of bacteriochlorophyll c. The Journal of Biological Chemistry. 286: 22393-402. PMID 21550979 DOI: 10.1074/Jbc.M111.249433  0.508
2011 Liu Z, Bryant DA. Identification of a gene essential for the first committed step in the biosynthesis of bacteriochlorophyll c (Journal of Biological Chemistry (2011) 286, (22393-22402)) Journal of Biological Chemistry. 286: 29442. DOI: 10.1074/jbc.A111.249433  0.471
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