Upinder Singh - Publications

Affiliations: 
Stanford University, Palo Alto, CA 
Area:
Parasitology Biology, Microbiology Biology

64/135 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Zhang H, Veira J, Bauer ST, Yip C, Singh U. RISC in Entamoeba histolytica: Identification of a Protein-Protein Interaction Network for the RNA Interference Pathway in a Deep-Branching Eukaryote. Mbio. e0154021. PMID 34488447 DOI: 10.1128/mBio.01540-21  0.3
2020 Kangussu-Marcolino MM, Morgado P, Manna D, Yee H, Singh U. Development of a CRISPR/Cas9 system in Entamoeba histolytica: proof of concept. International Journal For Parasitology. PMID 33264648 DOI: 10.1016/j.ijpara.2020.09.005  0.393
2020 Manna D, Lozano-Amado D, Ehrenkaufer G, Singh U. The NAD Responsive Transcription Factor ERM-BP Functions Downstream of Cellular Aggregation and Is an Early Regulator of Development and Heat Shock Response in . Frontiers in Cellular and Infection Microbiology. 10: 363. PMID 32766170 DOI: 10.3389/Fcimb.2020.00363  0.354
2020 Sharma M, Morgado P, Zhang H, Ehrenkaufer G, Manna D, Singh U. Characterization of extracellular vesicles from identifies roles in intercellular communication that regulates parasite growth and development. Infection and Immunity. PMID 32719158 DOI: 10.1128/Iai.00349-20  0.349
2020 Ehrenkaufer G, Li P, Stebbins EE, Kangussu-Marcolino MM, Debnath A, White CV, Moser MS, DeRisi J, Gisselberg J, Yeh E, Wang SC, Company AH, Monti L, Caffrey CR, Huston CD, ... ... Singh U, et al. Identification of anisomycin, prodigiosin and obatoclax as compounds with broad-spectrum anti-parasitic activity. Plos Neglected Tropical Diseases. 14: e0008150. PMID 32196500 DOI: 10.1371/Journal.Pntd.0008150  0.311
2019 Manna D, Singh U. Nuclear Factor Y (NF-Y) Modulates Encystation in via Stage-Specific Expression of the NF-YB and NF-YC Subunits. Mbio. 10. PMID 31213550 DOI: 10.1128/Mbio.00737-19  0.325
2018 Manna D, Lentz CS, Ehrenkaufer GM, Suresh S, Bhat A, Singh U. An NAD-dependent novel transcription factor controls stage conversion in . Elife. 7. PMID 30375973 DOI: 10.7554/Elife.37912  0.344
2018 Ehrenkaufer GM, Suresh S, Solow-Cordero D, Singh U. High-Throughput Screening of Identifies Compounds Which Target Both Life Cycle Stages and Which Are Effective Against Metronidazole Resistant Parasites. Frontiers in Cellular and Infection Microbiology. 8: 276. PMID 30175074 DOI: 10.3389/Fcimb.2018.00276  0.3
2016 Morgado P, Manna D, Singh U. Recent advances in Entamoeba biology: RNA interference, drug discovery, and gut microbiome. F1000research. 5: 2578. PMID 27853522 DOI: 10.12688/F1000Research.9241.1  0.38
2016 Suresh S, Ehrenkaufer G, Zhang H, Singh U. Development of RNAi trigger-mediated gene silencing in Entamoeba invadens. Infection and Immunity. PMID 26787723 DOI: 10.1128/Iai.01161-15  0.47
2015 Khalil MI, Foda BM, Suresh S, Singh U. Technical advances in trigger-induced RNA interference gene silencing in the parasite Entamoeba histolytica. International Journal For Parasitology. PMID 26747561 DOI: 10.1016/J.Ijpara.2015.11.004  0.464
2015 Zhang H, Ehrenkaufer GM, Manna D, Hall N, Singh U. High Throughput Sequencing of Entamoeba 27nt Small RNA Population Reveals Role in Permanent Gene Silencing But No Effect on Regulating Gene Expression Changes during Stage Conversion, Oxidative, or Heat Shock Stress. Plos One. 10: e0134481. PMID 26248204 DOI: 10.1371/Journal.Pone.0134481  0.391
2015 Pompey JM, Foda B, Singh U. A Single RNaseIII Domain Protein from Entamoeba histolytica Has dsRNA Cleavage Activity and Can Help Mediate RNAi Gene Silencing in a Heterologous System. Plos One. 10: e0133740. PMID 26230096 DOI: 10.1371/Journal.Pone.0133740  0.33
2015 Foda BM, Singh U. Dimethylated H3K27 Is a Repressive Epigenetic Histone Mark in the Protist Entamoeba histolytica and Is Significantly Enriched in Genes Silenced via the RNAi Pathway. The Journal of Biological Chemistry. 290: 21114-30. PMID 26149683 DOI: 10.1074/Jbc.M115.647263  0.375
2015 Rastew E, Morf L, Singh U. Entamoeba histolytica rhomboid protease 1 has a role in migration and motility as validated by two independent genetic approaches. Experimental Parasitology. 154: 33-42. PMID 25889553 DOI: 10.1016/J.Exppara.2015.04.004  0.461
2014 Pompey JM, Morf L, Singh U. RNAi pathway genes are resistant to small RNA mediated gene silencing in the protozoan parasite Entamoeba histolytica. Plos One. 9: e106477. PMID 25198343 DOI: 10.1371/Journal.Pone.0106477  0.368
2014 Manna D, Ehrenkaufer GM, Singh U. Regulation of gene expression in the protozoan parasite Entamoeba invadens: identification of core promoter elements and promoters with stage-specific expression patterns. International Journal For Parasitology. 44: 837-45. PMID 25075445 DOI: 10.1016/J.Ijpara.2014.06.008  0.478
2014 Liu YC, Singh U. Destabilization domain approach adapted for regulated protein expression in the protozoan parasite Entamoeba histolytica. International Journal For Parasitology. 44: 729-35. PMID 24929134 DOI: 10.1016/J.Ijpara.2014.05.002  0.349
2013 Morf L, Pearson RJ, Wang AS, Singh U. Robust gene silencing mediated by antisense small RNAs in the pathogenic protist Entamoeba histolytica. Nucleic Acids Research. 41: 9424-37. PMID 23935116 DOI: 10.1093/Nar/Gkt717  0.457
2013 Ehrenkaufer GM, Weedall GD, Williams D, Lorenzi HA, Caler E, Hall N, Singh U. The genome and transcriptome of the enteric parasite Entamoeba invadens, a model for encystation. Genome Biology. 14: R77. PMID 23889909 DOI: 10.1186/Gb-2013-14-7-R77  0.382
2013 Zhang H, Ehrenkaufer GM, Hall N, Singh U. Small RNA pyrosequencing in the protozoan parasite Entamoeba histolytica reveals strain-specific small RNAs that target virulence genes. Bmc Genomics. 14: 53. PMID 23347563 DOI: 10.1186/1471-2164-14-53  0.363
2013 Pearson RJ, Morf L, Singh U. Regulation of H2O2 stress-responsive genes through a novel transcription factor in the protozoan pathogen Entamoeba histolytica. The Journal of Biological Chemistry. 288: 4462-74. PMID 23250742 DOI: 10.1074/Jbc.M112.423467  0.411
2012 Rastew E, Vicente JB, Singh U. Oxidative stress resistance genes contribute to the pathogenic potential of the anaerobic protozoan parasite, Entamoeba histolytica. International Journal For Parasitology. 42: 1007-15. PMID 23009748 DOI: 10.1016/J.Ijpara.2012.08.006  0.482
2012 Vicente JB, Tran V, Pinto L, Teixeira M, Singh U. A detoxifying oxygen reductase in the anaerobic protozoan Entamoeba histolytica. Eukaryotic Cell. 11: 1112-8. PMID 22798391 DOI: 10.1128/Ec.00149-12  0.36
2012 Morf L, Singh U. Entamoeba histolytica: a snapshot of current research and methods for genetic analysis. Current Opinion in Microbiology. 15: 469-75. PMID 22664276 DOI: 10.1016/J.Mib.2012.04.011  0.382
2012 Ehrenkaufer GM, Singh U. Transient and stable transfection in the protozoan parasite Entamoeba invadens. Molecular and Biochemical Parasitology. 184: 59-62. PMID 22561071 DOI: 10.1016/J.Molbiopara.2012.04.007  0.397
2011 Zhang H, Alramini H, Tran V, Singh U. Nucleus-localized antisense small RNAs with 5'-polyphosphate termini regulate long term transcriptional gene silencing in Entamoeba histolytica G3 strain. The Journal of Biological Chemistry. 286: 44467-79. PMID 22049083 DOI: 10.1074/Jbc.M111.278184  0.467
2011 Zhang H, Pompey JM, Singh U. RNA interference in Entamoeba histolytica: implications for parasite biology and gene silencing. Future Microbiology. 6: 103-17. PMID 21162639 DOI: 10.2217/Fmb.10.154  0.429
2010 Pearson RJ, Singh U. Approaches to characterizing Entamoeba histolytica transcriptional regulation. Cellular Microbiology. 12: 1681-90. PMID 20812994 DOI: 10.1111/J.1462-5822.2010.01524.X  0.437
2010 Baxt LA, Rastew E, Bracha R, Mirelman D, Singh U. Downregulation of an Entamoeba histolytica rhomboid protease reveals roles in regulating parasite adhesion and phagocytosis. Eukaryotic Cell. 9: 1283-93. PMID 20581296 DOI: 10.1128/Ec.00015-10  0.756
2009 Ehrenkaufer GM, Hackney JA, Singh U. A developmentally regulated Myb domain protein regulates expression of a subset of stage-specific genes in Entamoeba histolytica. Cellular Microbiology. 11: 898-910. PMID 19239479 DOI: 10.1111/J.1462-5822.2009.01300.X  0.451
2009 Linford AS, Moreno H, Good KR, Zhang H, Singh U, Petri WA. Short hairpin RNA-mediated knockdown of protein expression in Entamoeba histolytica. Bmc Microbiology. 9: 38. PMID 19222852 DOI: 10.1186/1471-2180-9-38  0.448
2009 Anderson MZ, Brewer J, Singh U, Boothroyd JC. A pseudouridine synthase homologue is critical to cellular differentiation in Toxoplasma gondii. Eukaryotic Cell. 8: 398-409. PMID 19124578 DOI: 10.1128/Ec.00329-08  0.393
2009 Singh U, Ehrenkaufer GM. Recent insights into Entamoeba development: identification of transcriptional networks associated with stage conversion. International Journal For Parasitology. 39: 41-7. PMID 18938171 DOI: 10.1016/J.Ijpara.2008.09.004  0.373
2009 Vicente JB, Ehrenkaufer GM, Saraiva LM, Teixeira M, Singh U. Entamoeba histolytica modulates a complex repertoire of novel genes in response to oxidative and nitrosative stresses: implications for amebic pathogenesis. Cellular Microbiology. 11: 51-69. PMID 18778413 DOI: 10.1111/J.1462-5822.2008.01236.X  0.489
2008 Zhang H, Ehrenkaufer GM, Pompey JM, Hackney JA, Singh U. Small RNAs with 5'-polyphosphate termini associate with a Piwi-related protein and regulate gene expression in the single-celled eukaryote Entamoeba histolytica. Plos Pathogens. 4: e1000219. PMID 19043551 DOI: 10.1371/Journal.Ppat.1000219  0.44
2008 Ehrenkaufer GM, Singh U. Transcriptional regulatory networks in Entamoeba histolytica. Current Drug Targets. 9: 931-7. PMID 18991605 DOI: 10.2174/138945008786786109  0.518
2008 Baxt LA, Singh U. New insights into Entamoeba histolytica pathogenesis. Current Opinion in Infectious Diseases. 21: 489-94. PMID 18725798 DOI: 10.1097/Qco.0B013E32830Ce75F  0.731
2008 Baxt LA, Baker RP, Singh U, Urban S. An Entamoeba histolytica rhomboid protease with atypical specificity cleaves a surface lectin involved in phagocytosis and immune evasion. Genes & Development. 22: 1636-46. PMID 18559479 DOI: 10.1101/Gad.1667708  0.751
2008 MacFarlane RC, Singh U. Loss of dsRNA-based gene silencing in Entamoeba histolytica: implications for approaches to genetic analysis. Experimental Parasitology. 119: 296-300. PMID 18346737 DOI: 10.1016/J.Exppara.2008.02.001  0.78
2007 Clark CG, Alsmark UC, Tazreiter M, Saito-Nakano Y, Ali V, Marion S, Weber C, Mukherjee C, Bruchhaus I, Tannich E, Leippe M, Sicheritz-Ponten T, Foster PG, Samuelson J, Noël CJ, ... ... Singh U, et al. Structure and content of the Entamoeba histolytica genome. Advances in Parasitology. 65: 51-190. PMID 18063096 DOI: 10.1016/S0065-308X(07)65002-7  0.388
2007 MacFarlane RC, Singh U. Identification of an Entamoeba histolytica serine-, threonine-, and isoleucine-rich protein with roles in adhesion and cytotoxicity. Eukaryotic Cell. 6: 2139-46. PMID 17827347 DOI: 10.1128/Ec.00174-07  0.784
2007 Ehrenkaufer GM, Eichinger DJ, Singh U. Trichostatin A effects on gene expression in the protozoan parasite Entamoeba histolytica. Bmc Genomics. 8: 216. PMID 17612405 DOI: 10.1186/1471-2164-8-216  0.433
2007 Davis CA, Brown MP, Singh U. Functional characterization of spliceosomal introns and identification of U2, U4, and U5 snRNAs in the deep-branching eukaryote Entamoeba histolytica. Eukaryotic Cell. 6: 940-8. PMID 17468393 DOI: 10.1128/Ec.00059-07  0.411
2007 Hackney JA, Ehrenkaufer GM, Singh U. Identification of putative transcriptional regulatory networks in Entamoeba histolytica using Bayesian inference. Nucleic Acids Research. 35: 2141-52. PMID 17355990 DOI: 10.1093/Nar/Gkm028  0.445
2007 Ehrenkaufer GM, Haque R, Hackney JA, Eichinger DJ, Singh U. Identification of developmentally regulated genes in Entamoeba histolytica: insights into mechanisms of stage conversion in a protozoan parasite. Cellular Microbiology. 9: 1426-44. PMID 17250591 DOI: 10.1111/J.1462-5822.2006.00882.X  0.503
2007 Ali IK, Ehrenkaufer GM, Hackney JA, Singh U. Growth of the protozoan parasite Entamoeba histolytica in 5-azacytidine has limited effects on parasite gene expression. Bmc Genomics. 8: 7. PMID 17207281 DOI: 10.1186/1471-2164-8-7  0.443
2006 Gilchrist CA, Houpt E, Trapaidze N, Fei Z, Crasta O, Asgharpour A, Evans C, Martino-Catt S, Baba DJ, Stroup S, Hamano S, Ehrenkaufer G, Okada M, Singh U, Nozaki T, et al. Impact of intestinal colonization and invasion on the Entamoeba histolytica transcriptome. Molecular and Biochemical Parasitology. 147: 163-76. PMID 16569449 DOI: 10.1016/J.Molbiopara.2006.02.007  0.445
2006 MacFarlane RC, Singh U. Identification of differentially expressed genes in virulent and nonvirulent Entamoeba species: potential implications for amebic pathogenesis. Infection and Immunity. 74: 340-51. PMID 16368989 DOI: 10.1128/Iai.74.1.340-351.2006  0.787
2005 Vanchinathan P, Brewer JL, Harb OS, Boothroyd JC, Singh U. Disruption of a locus encoding a nucleolar zinc finger protein decreases tachyzoite-to-bradyzoite differentiation in Toxoplasma gondii. Infection and Immunity. 73: 6680-8. PMID 16177345 DOI: 10.1128/Iai.73.10.6680-6688.2005  0.45
2005 MacFarlane R, Bhattacharya D, Singh U. Genomic DNA microarrays for Entamoeba histolytica: applications for use in expression profiling and strain genotyping. Experimental Parasitology. 110: 196-202. PMID 15955312 DOI: 10.1016/J.Exppara.2005.03.006  0.777
2005 MacFarlane RC, Shah PH, Singh U. Transcriptional profiling of Entamoeba histolytica trophozoites. International Journal For Parasitology. 35: 533-42. PMID 15826645 DOI: 10.1016/J.Ijpara.2005.02.006  0.755
2005 Shah PH, MacFarlane RC, Bhattacharya D, Matese JC, Demeter J, Stroup SE, Singh U. Comparative genomic hybridizations of Entamoeba strains reveal unique genetic fingerprints that correlate with virulence. Eukaryotic Cell. 4: 504-15. PMID 15755913 DOI: 10.1128/Ec.4.3.504-515.2005  0.755
2005 Loftus B, Anderson I, Davies R, Alsmark UC, Samuelson J, Amedeo P, Roncaglia P, Berriman M, Hirt RP, Mann BJ, Nozaki T, Suh B, Pop M, Duchene M, Ackers J, ... ... Singh U, et al. The genome of the protist parasite Entamoeba histolytica. Nature. 433: 865-8. PMID 15729342 DOI: 10.1038/Nature03291  0.44
2004 Singh U, Shah PH, MacFarlane RC. DNA content analysis on microarrays. Methods in Molecular Biology (Clifton, N.J.). 270: 237-48. PMID 15153631 DOI: 10.1385/1-59259-793-9:237  0.764
2003 Boothroyd JC, Blader I, Cleary M, Singh U. DNA microarrays in parasitology: strengths and limitations. Trends in Parasitology. 19: 470-6. PMID 14519585 DOI: 10.1016/J.Pt.2003.08.002  0.347
2002 Cleary MD, Singh U, Blader IJ, Brewer JL, Boothroyd JC. Toxoplasma gondii asexual development: identification of developmentally regulated genes and distinct patterns of gene expression. Eukaryotic Cell. 1: 329-40. PMID 12455982 DOI: 10.1128/Ec.1.3.329-340.2002  0.486
2002 Matrajt M, Donald RG, Singh U, Roos DS. Identification and characterization of differentiation mutants in the protozoan parasite Toxoplasma gondii. Molecular Microbiology. 44: 735-47. PMID 11994154 DOI: 10.1046/J.1365-2958.2002.02904.X  0.429
2002 Singh U, Brewer JL, Boothroyd JC. Genetic analysis of tachyzoite to bradyzoite differentiation mutants in Toxoplasma gondii reveals a hierarchy of gene induction. Molecular Microbiology. 44: 721-33. PMID 11994153 DOI: 10.1046/J.1365-2958.2002.02903.X  0.427
2002 Singh U, Gilchrist CA, Schaenman JM, Rogers JB, Hockensmith JW, Mann BJ, Petri WA. Context-dependent roles of the Entamoeba histolytica core promoter element GAAC in transcriptional activation and protein complex assembly. Molecular and Biochemical Parasitology. 120: 107-16. PMID 11849710 DOI: 10.1016/S0166-6851(01)00441-8  0.326
2002 Singh U, Shah P. Investigating amoebic pathogenesis usingEntamoeba histolytica DNA microarrays Journal of Biosciences. 27: 595-601. DOI: 10.1007/Bf02704853  0.44
1999 Petri WA, Singh U. Diagnosis and management of amebiasis. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 29: 1117-25. PMID 10524950 DOI: 10.1086/313493  0.314
1998 Singh U, Rogers JB. The novel core promoter element GAAC in the hgl5 gene of Entamoeba histolytica is able to direct a transcription start site independent of TATA or initiator regions. The Journal of Biological Chemistry. 273: 21663-8. PMID 9705300 DOI: 10.1074/Jbc.273.34.21663  0.328
1997 Singh U, Rogers JB, Mann BJ, Petri WA. Transcription initiation is controlled by three core promoter elements in the hgl5 gene of the protozoan parasite Entamoeba histolytica. Proceedings of the National Academy of Sciences of the United States of America. 94: 8812-7. PMID 9238060 DOI: 10.1073/Pnas.94.16.8812  0.314
Low-probability matches (unlikely to be authored by this person)
2005 Bhattacharya D, Haque R, Singh U. Coding and noncoding genomic regions of Entamoeba histolytica have significantly different rates of sequence polymorphisms: implications for epidemiological studies. Journal of Clinical Microbiology. 43: 4815-9. PMID 16145147 DOI: 10.1128/Jcm.43.9.4815-4819.2005  0.293
2019 Kangussu-Marcolino MM, Ehrenkaufer GM, Chen E, Debnath A, Singh U. Identification of plicamycin, TG02, panobinostat, lestaurtinib, and GDC-0084 as promising compounds for the treatment of central nervous system infections caused by the free-living amebae Naegleria, Acanthamoeba and Balamuthia. International Journal For Parasitology. Drugs and Drug Resistance. 11: 80-94. PMID 31707263 DOI: 10.1016/J.Ijpddr.2019.10.003  0.281
2023 Yanagawa Y, Singh U. Diversity and Plasticity of Virulent Characteristics of . Tropical Medicine and Infectious Disease. 8. PMID 37235303 DOI: 10.3390/tropicalmed8050255  0.27
2023 Sharma M, Lozano-Amado D, Chowdhury D, Singh U. Extracellular Vesicles and Their Impact on the Biology of Protozoan Parasites. Tropical Medicine and Infectious Disease. 8. PMID 37755909 DOI: 10.3390/tropicalmed8090448  0.269
2020 Zhang H, Ehrenkaufer GM, Hall N, Singh U. Identification of oligo-adenylated small RNAs in the parasite Entamoeba and a potential role for small RNA control. Bmc Genomics. 21: 879. PMID 33297948 DOI: 10.1186/s12864-020-07275-6  0.254
2023 Sharma M, Zhang H, Ehrenkaufer G, Singh U. Stress Response in Entamoeba histolytica Is Associated with Robust Processing of tRNA to tRNA Halves. Mbio. e0345022. PMID 36809068 DOI: 10.1128/mbio.03450-22  0.249
2018 Manna D, Lentz CS, Ehrenkaufer GM, Suresh S, Bhat A, Singh U. Author response: An NAD+-dependent novel transcription factor controls stage conversion in Entamoeba Elife. DOI: 10.7554/Elife.37912.030  0.243
2019 Zhang H, Tran V, Manna D, Ehrenkaufer G, Singh U. Functional Characterization of Entamoeba histolytica Argonaute Proteins Reveals a Repetitive DR-Rich Motif Region That Controls Nuclear Localization. Msphere. 4. PMID 31619501 DOI: 10.1128/mSphere.00580-19  0.241
1996 Singh U, Scheld WM. Infectious etiologies of rhabdomyolysis: three case reports and review. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 22: 642-9. PMID 8729203 DOI: 10.1093/Clinids/22.4.642  0.241
2013 Lin A, Bik EM, Costello EK, Dethlefsen L, Haque R, Relman DA, Singh U. Distinct distal gut microbiome diversity and composition in healthy children from Bangladesh and the United States. Plos One. 8: e53838. PMID 23349750 DOI: 10.1371/Journal.Pone.0053838  0.225
2018 Singh U, Levy J, Armstrong W, Bedimo R, Creech CB, Lautenbach E, Popovich KJ, Snowden J, Vyas JM. Policy Recommendations for Optimizing the Infectious Diseases Physician-Scientist Workforce. The Journal of Infectious Diseases. 218: S49-S54. PMID 30124981 DOI: 10.1093/Infdis/Jiy246  0.219
1997 Singh U, Petri WA. Molecular medicine's applications to the developing world: enlightened self interest. Molecular Medicine Today. 3: 234-5. PMID 9211411 DOI: 10.1016/S1357-4310(97)01062-9  0.208
2018 Singh U. Supporting Research Career Development of Physician-Scientists. The Journal of Infectious Diseases. 218: S36-S39. PMID 30124974 DOI: 10.1093/Infdis/Jiy124  0.204
2023 Natarajan A, Fremin BJ, Schmidtke DT, Wolfe MK, Zlitni S, Graham KE, Brooks EF, Severyn CJ, Sakamoto KM, Lacayo NJ, Kuersten S, Koble J, Caves G, Kaplan I, Singh U, et al. Tomato brown rugose fruit virus Mo gene is a novel microbial source tracking marker. Biorxiv : the Preprint Server For Biology. PMID 36712100 DOI: 10.1101/2023.01.09.523366  0.197
2023 Natarajan A, Fremin BJ, Schmidtke DT, Wolfe MK, Zlitni S, Graham KE, Brooks EF, Severyn CJ, Sakamoto KM, Lacayo NJ, Kuersten S, Koble J, Caves G, Kaplan I, Singh U, et al. The Tomato Brown Rugose Fruit Virus Movement Protein Gene Is a Novel Microbial Source Tracking Marker. Applied and Environmental Microbiology. e0058323. PMID 37404180 DOI: 10.1128/aem.00583-23  0.194
2020 Manna D, Ehrenkaufer GM, Lozano-Amado D, Singh U. Entamoeba stage conversion: progress and new insights. Current Opinion in Microbiology. 58: 62-68. PMID 33032142 DOI: 10.1016/j.mib.2020.09.005  0.193
2022 Hu Z, van der Ploeg K, Chakraborty S, Arunachalam P, Mori D, Jacobson K, Bonilla H, Parsonnet J, Andrews J, Hedlin H, de la Parte L, Dantzler K, Ty M, Tan G, Blish C, ... ... Singh U, et al. Early immune responses have long-term associations with clinical, virologic, and immunologic outcomes in patients with COVID-19. Research Square. PMID 35132407 DOI: 10.21203/rs.3.rs-847082/v1  0.155
2012 Singh U, Quintanilla RH, Grecian S, Gee KR, Rao MS, Lakshmipathy U. Novel live alkaline phosphatase substrate for identification of pluripotent stem cells. Stem Cell Reviews. 8: 1021-9. PMID 22426885 DOI: 10.1007/s12015-012-9359-6  0.148
2021 Kangussu-Marcolino MM, Singh U. Ponatinib, Lestaurtinib and mTOR/PI3K inhibitors are promising repurposing candidates against . Antimicrobial Agents and Chemotherapy. AAC0120721. PMID 34871094 DOI: 10.1128/AAC.01207-21  0.144
2022 Feng A, Yang E, Moore A, Dhingra S, Chang S, Yin X, Pi R, Mack E, Völkel S, Geßner R, Gundisch M, Neubauer A, Renz H, Tsiodras S, Fragkou P, ... ... Singh U, et al. Autoantibodies targeting cytokines and connective tissue disease autoantigens are common in acute non-SARS-CoV-2 infections. Research Square. PMID 35075455 DOI: 10.21203/rs.3.rs-1233038/v1  0.141
2022 Hu Z, van der Ploeg K, Chakraborty S, Arunachalam PS, Mori DAM, Jacobson KB, Bonilla H, Parsonnet J, Andrews JR, Holubar M, Subramanian A, Khosla C, Maldonado Y, Hedlin H, de la Parte L, ... ... Singh U, et al. Early immune markers of clinical, virological, and immunological outcomes in patients with COVID-19: a multi-omics study. Elife. 11. PMID 36239699 DOI: 10.7554/eLife.77943  0.139
2023 Walter KS, Kim E, Verma R, Altamirano J, Leary S, Carrington YJ, Jagannathan P, Singh U, Holubar M, Subramanian A, Khosla C, Maldonado Y, Andrews JR. Challenges in Harnessing Shared Within-Host Severe Acute Respiratory Syndrome Coronavirus 2 Variation for Transmission Inference. Open Forum Infectious Diseases. 10: ofad001. PMID 36751652 DOI: 10.1093/ofid/ofad001  0.131
2009 Shukla SJ, Nguyen DT, Macarthur R, Simeonov A, Frazee WJ, Hallis TM, Marks BD, Singh U, Eliason HC, Printen J, Austin CP, Inglese J, Auld DS. Identification of pregnane X receptor ligands using time-resolved fluorescence resonance energy transfer and quantitative high-throughput screening. Assay and Drug Development Technologies. 7: 143-69. PMID 19505231 DOI: 10.1089/adt.2009.193  0.11
2021 Chang SE, Feng A, Meng W, Apostolidis SA, Mack E, Artandi M, Barman L, Bennett K, Chakraborty S, Chang I, Cheung P, Chinthrajah S, Dhingra S, Do E, Finck A, ... ... Singh U, et al. New-onset IgG autoantibodies in hospitalized patients with COVID-19. Nature Communications. 12: 5417. PMID 34521836 DOI: 10.1038/s41467-021-25509-3  0.106
2023 Feng A, Yang EY, Moore AR, Dhingra S, Chang SE, Yin X, Pi R, Mack EK, Völkel S, Geßner R, Gündisch M, Neubauer A, Renz H, Tsiodras S, Fragkou PC, ... ... Singh U, et al. Autoantibodies are highly prevalent in non-SARS-CoV-2 respiratory infections and critical illness. Jci Insight. 8. PMID 36752204 DOI: 10.1172/jci.insight.163150  0.103
2022 Murugesan K, Jagannathan P, Altamirano J, Maldonado YA, Bonilla HF, Jacobson KB, Parsonnet J, Andrews JR, Shi RZ, Boyd S, Pinsky BA, Singh U, Banaei N. Long Term Accuracy of SARS-CoV-2 Interferon-γ Release Assay and its Application in Household Investigation. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 35079772 DOI: 10.1093/cid/ciac045  0.102
2023 Horwitz LI, Thaweethai T, Brosnahan SB, Cicek MS, Fitzgerald ML, Goldman JD, Hess R, Hodder SL, Jacoby VL, Jordan MR, Krishnan JA, Laiyemo AO, Metz TD, Nichols L, Patzer RE, ... ... Singh U, et al. Researching COVID to Enhance Recovery (RECOVER) adult study protocol: Rationale, objectives, and design. Plos One. 18: e0286297. PMID 37352211 DOI: 10.1371/journal.pone.0286297  0.102
2023 Thaweethai T, Jolley SE, Karlson EW, Levitan EB, Levy B, McComsey GA, McCorkell L, Nadkarni GN, Parthasarathy S, Singh U, Walker TA, Selvaggi CA, Shinnick DJ, Schulte CCM, Atchley-Challenner R, et al. Development of a Definition of Postacute Sequelae of SARS-CoV-2 Infection. Jama. PMID 37278994 DOI: 10.1001/jama.2023.8823  0.102
2021 Chang SE, Feng A, Meng W, Apostolidis SA, Mack E, Artandi M, Barman L, Bennett K, Chakraborty S, Chang I, Cheung P, Chinthrajah S, Dhingra S, Do E, Finck A, ... ... Singh U, et al. New-Onset IgG Autoantibodies in Hospitalized Patients with COVID-19. Medrxiv : the Preprint Server For Health Sciences. PMID 33532787 DOI: 10.1101/2021.01.27.21250559  0.1
2021 Chakraborty S, Gonzalez JC, Sievers BL, Mallajosyula V, Dubey M, Cheng BY, Thi Tran KQ, Chakraborty S, Cassidy A, Chen ST, Sinnott A, Gelbart T, Golan Y, Prahl M, Singh U, et al. Divergent early antibody responses define COVID-19 disease trajectories. Biorxiv : the Preprint Server For Biology. PMID 34075376 DOI: 10.1101/2021.05.25.445649  0.097
2021 Verma R, Kim E, Martínez-Colón GJ, Jagannathan P, Rustagi A, Parsonnet J, Bonilla H, Khosla C, Holubar M, Subramanian A, Singh U, Maldonado Y, Blish CA, Andrews JR. SARS-CoV-2 Subgenomic RNA Kinetics in Longitudinal Clinical Samples. Open Forum Infectious Diseases. 8: ofab310. PMID 34295944 DOI: 10.1093/ofid/ofab310  0.096
1987 Saxena KB, Faris DG, Singh U, Kumar RV. Relationship between seed size and protein content in newly developed high protein lines of pigeonpea Qualitas Plantarum Plant Foods For Human Nutrition. 36: 335-340. DOI: 10.1007/BF01892354  0.096
2021 Natarajan A, Han A, Zlitni S, Brooks EF, Vance SE, Wolfe M, Singh U, Jagannathan P, Pinsky BA, Boehm A, Bhatt AS. Standardized and optimized preservation, extraction and quantification techniques for detection of fecal SARS-CoV-2 RNA. Medrxiv : the Preprint Server For Health Sciences. PMID 33880485 DOI: 10.1101/2021.04.10.21255250  0.095
2022 Sievers BL, Chakraborty S, Xue Y, Gelbart T, Gonzalez JC, Cassidy AG, Golan Y, Prahl M, Gaw SL, Arunachalam PS, Blish CA, Boyd SD, Davis MM, Jagannathan P, Nadeau KC, ... ... Singh U, et al. Antibodies elicited by SARS-CoV-2 infection or mRNA vaccines have reduced neutralizing activity against Beta and Omicron pseudoviruses. Science Translational Medicine. eabn7842. PMID 35025672 DOI: 10.1126/scitranslmed.abn7842  0.093
2021 Natarajan A, Han A, Zlitni S, Brooks EF, Vance SE, Wolfe M, Singh U, Jagannathan P, Pinsky BA, Boehm A, Bhatt AS. Standardized preservation, extraction and quantification techniques for detection of fecal SARS-CoV-2 RNA. Nature Communications. 12: 5753. PMID 34599164 DOI: 10.1038/s41467-021-25576-6  0.092
2022 Natarajan A, Zlitni S, Brooks EF, Vance SE, Dahlen A, Hedlin H, Park RM, Han A, Schmidtke DT, Verma R, Jacobson KB, Parsonnet J, Bonilla HF, Singh U, Pinsky BA, et al. Gastrointestinal symptoms and fecal shedding of SARS-CoV-2 RNA suggest prolonged gastrointestinal infection. Med (New York, N.Y.). PMID 35434682 DOI: 10.1016/j.medj.2022.04.001  0.085
2022 Chakraborty S, Gonzalez JC, Sievers BL, Mallajosyula V, Chakraborty S, Dubey M, Ashraf U, Cheng BY, Kathale N, Tran KQT, Scallan C, Sinnott A, Cassidy A, Chen ST, Gelbart T, ... ... Singh U, et al. Early non-neutralizing, afucosylated antibody responses are associated with COVID-19 severity. Science Translational Medicine. eabm7853. PMID 35040666 DOI: 10.1126/scitranslmed.abm7853  0.084
2012 Uttamapinant C, Tangpeerachaikul A, Grecian S, Clarke S, Singh U, Slade P, Gee KR, Ting AY. Fast, cell-compatible click chemistry with copper-chelating azides for biomolecular labeling. Angewandte Chemie (International Ed. in English). 51: 5852-6. PMID 22555882 DOI: 10.1002/Anie.201108181  0.084
2021 Kaur J, Singh U, Pradhan U, Singh G, Agarwal PN. A Rare Case of Gastrointestinal Mucormycosis. Cureus. 13: e17748. PMID 34659961 DOI: 10.7759/cureus.17748  0.081
2009 Lebakken CS, Riddle SM, Singh U, Frazee WJ, Eliason HC, Gao Y, Reichling LJ, Marks BD, Vogel KW. Development and applications of a broad-coverage, TR-FRET-based kinase binding assay platform. Journal of Biomolecular Screening. 14: 924-35. PMID 19564447 DOI: 10.1177/1087057109339207  0.078
2003 Singh U, Raju B, Lam S, Zhou J, Gadwood RC, Ford CW, Zurenko GE, Schaadt RD, Morin SE, Adams WJ, Friis JM, Courtney M, Palandra J, Hackbarth CJ, Lopez S, et al. New antibacterial tetrahydro-4(2H)-thiopyran and thiomorpholine S-oxide and S,S-dioxide phenyloxazolidinones. Bioorganic & Medicinal Chemistry Letters. 13: 4209-12. PMID 14623003 DOI: 10.1016/j.bmcl.2003.07.022  0.077
2022 Holubar M, Subramanian A, Purington N, Hedlin H, Bunning B, Walter KS, Bonilla H, Boumis A, Chen M, Clinton K, Dewhurst L, Epstein C, Jagannathan P, Kaszynski RH, Panu L, ... ... Singh U, et al. Favipiravir for treatment of outpatients with asymptomatic or uncomplicated COVID-19: a double-blind randomized, placebo-controlled, phase 2 trial. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 35446944 DOI: 10.1093/cid/ciac312  0.077
2020 Chakraborty S, Gonzalez J, Edwards K, Mallajosyula V, Buzzanco AS, Sherwood R, Buffone C, Kathale N, Providenza S, Xie MM, Andrews JR, Blish CA, Singh U, Dugan H, Wilson PC, et al. Proinflammatory IgG Fc structures in patients with severe COVID-19. Nature Immunology. PMID 33169014 DOI: 10.1038/s41590-020-00828-7  0.073
2012 Mandavilli BS, Aggeler RJ, Singh U, Chol Kang H, Gee K, Agnew B, Janes MS. Cell-Based Analysis of Oxidative Stress, Lipid Peroxidation and Lipid Peroxidation-Derived Protein Modifications using Fluorescence Microscopy Free Radical Biology and Medicine. 53: S136. DOI: 10.1016/j.freeradbiomed.2012.10.371  0.07
2022 van der Ploeg K, Kirosingh AS, Mori DAM, Chakraborty S, Hu Z, Sievers BL, Jacobson KB, Bonilla H, Parsonnet J, Andrews JR, Press KD, Ty MC, Ruiz-Betancourt DR, de la Parte L, Tan GS, ... ... Singh U, et al. TNF-α CD4 T cells dominate the SARS-CoV-2 specific T cell response in COVID-19 outpatients and are associated with durable antibodies. Cell Reports. Medicine. 100640. PMID 35588734 DOI: 10.1016/j.xcrm.2022.100640  0.068
2020 Murugesan K, Jagannathan P, Pham TD, Pandey S, Bonilla HF, Jacobson K, Parsonnet J, Andrews JR, Weiskopf D, Sette A, Pinsky BA, Singh U, Banaei N. Interferon-gamma release assay for accurate detection of SARS-CoV-2 T cell response. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 33035306 DOI: 10.1093/cid/ciaa1537  0.063
2021 Bunning B, Hedlin H, Purington N, Sundaram V, Kapphahn K, Weng Y, Cunanan K, Maldonado Y, Singh U, Khosla C, O'Hara R, Nicolls M, Springman E, Parsonnet J, Rogers A, et al. The COVID-19 Outpatient Pragmatic Platform Study (COPPS): Study design of a multi-center pragmatic platform trial. Contemporary Clinical Trials. 106509. PMID 34274494 DOI: 10.1016/j.cct.2021.106509  0.056
2020 Acharya S, Sarkar A, Singh U, Narayan A, Ningombam A. Unusual Location and Presentation of a Not So Common Cytoplasmic Inclusion. The Journal of Applied Laboratory Medicine. PMID 33227130 DOI: 10.1093/jalm/jfaa174  0.055
2022 Verma R, Kim E, Degner N, Walter KS, Singh U, Andrews JR. Variation in Severe Acute Respiratory Syndrome Coronavirus 2 Bioaerosol Production in Exhaled Breath. Open Forum Infectious Diseases. 9: ofab600. PMID 35028332 DOI: 10.1093/ofid/ofab600  0.053
2021 Wang AX, Busque S, Kuo J, Singh U, Röeltgen K, Pinsky BA, Chertow GM, Scandling JD, Lenihan CR. SARS-CoV-2 Neutralizing Monoclonal Antibodies for the Treatment of COVID-19 in Kidney Transplant Recipients. Kidney360. 3: 133-143. PMID 35368573 DOI: 10.34067/KID.0005732021  0.052
2022 Sears CL, Li JZ, Singh U. Turning the page: a welcome from the new leadership of the Journal of Infectious Diseases. The Journal of Infectious Diseases. 227: 1-3. PMID 36576495 DOI: 10.1093/infdis/jiac400  0.052
2023 Jagannathan P, Chew KW, Giganti MJ, Hughes MD, Moser C, Main MJ, Monk PD, Javan AC, Li JZ, Fletcher CV, McCarthy C, Wohl DA, Daar ES, Eron JJ, Currier JS, ... Singh U, et al. Safety and efficacy of inhaled interferon-β1a (SNG001) in adults with mild-to-moderate COVID-19: a randomized, controlled, phase II trial. Eclinicalmedicine. 65: 102250. PMID 37855026 DOI: 10.1016/j.eclinm.2023.102250  0.05
2021 Natarajan A, Han A, Zlitni S, Brooks EF, Vance SE, Wolfe M, Singh U, Jagannathan P, Pinsky BA, Boehm A, Bhatt AS. Publisher Correction: Standardized preservation, extraction and quantification techniques for detection of fecal SARS-CoV-2 RNA. Nature Communications. 12: 7100. PMID 34853336 DOI: 10.1038/s41467-021-27392-4  0.047
2021 Jacobson KB, Rao M, Bonilla H, Subramanian A, Hack I, Madrigal M, Singh U, Jagannathan P, Grant P. Patients with uncomplicated COVID-19 have long-term persistent symptoms and functional impairment similar to patients with severe COVID-19: a cautionary tale during a global pandemic. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 33624010 DOI: 10.1093/cid/ciab103  0.046
2023 Clancy CJ, Li JZ, Singh U, Sears CL. Transparent Reporting at the Journal of Infectious Diseases. The Journal of Infectious Diseases. PMID 37134129 DOI: 10.1093/infdis/jiad129  0.044
2016 Darivemula SB, Goswami K, Gupta SK, Salve H, Singh U, Goswami AK. Work-related Neck Pain Among Desk Job Workers of Tertiary Care Hospital in New Delhi, India: Burden and Determinants. Indian Journal of Community Medicine : Official Publication of Indian Association of Preventive & Social Medicine. 41: 50-4. PMID 26917874 DOI: 10.4103/0970-0218.170967  0.042
2021 Jacobson KB, Purington N, Parsonnet J, Andrews J, Balasubramanian V, Bonilla H, Edwards K, Desai M, Singh U, Hedlin H, Jagannathan P. Inflammatory but not respiratory symptoms are associated with ongoing upper airway viral shedding in outpatients with uncomplicated COVID-19. Diagnostic Microbiology and Infectious Disease. 102: 115612. PMID 34974350 DOI: 10.1016/j.diagmicrobio.2021.115612  0.038
2012 Malek-Ahmadi M, Davis K, Belden C, Laizure B, Jacobson S, Yaari R, Singh U, Sabbagh MN. Validation and diagnostic accuracy of the Alzheimer's questionnaire. Age and Ageing. 41: 396-9. PMID 22367356 DOI: 10.1093/Ageing/Afs008  0.038
2017 Salloway S, Gamez JE, Singh U, Sadowsky CH, Villena T, Sabbagh MN, Beach TG, Duara R, Fleisher AS, Frey KA, Walker Z, Hunjan A, Escovar YM, Agronin ME, Ross J, et al. Performance of [(18)F]flutemetamol amyloid imaging against the neuritic plaque component of CERAD and the current (2012) NIA-AA recommendations for the neuropathologic diagnosis of Alzheimer's disease. Alzheimer's & Dementia (Amsterdam, Netherlands). 9: 25-34. PMID 28795133 DOI: 10.1016/J.Dadm.2017.06.001  0.036
2021 Hilts A, Suri R, Machan M, Singh U. Cutaneous Periumbilical Fibroadenomas: A Rare Case of Ectopic Breast Tissue. Cureus. 13: e17523. PMID 34603893 DOI: 10.7759/cureus.17523  0.035
2010 Sabbagh MN, Malek-Ahmadi M, Kataria R, Belden CM, Connor DJ, Pearson C, Jacobson S, Davis K, Yaari R, Singh U. The Alzheimer's questionnaire: a proof of concept study for a new informant-based dementia assessment. Journal of Alzheimer's Disease : Jad. 22: 1015-21. PMID 20930293 DOI: 10.3233/Jad-2010-101185  0.034
2022 Levy V, Bengoa RY, Romero PP, Bollyky J, Singh U. Successful recruitment of monolingual Spanish speaking Latinos to university phase II and III outpatient COVID-19 clinical treatment trials in Northern California. Contemporary Clinical Trials. 120: 106891. PMID 36002110 DOI: 10.1016/j.cct.2022.106891  0.031
2021 Jagannathan P, Andrews JR, Bonilla H, Hedlin H, Jacobson KB, Balasubramanian V, Purington N, Kamble S, de Vries CR, Quintero O, Feng K, Ley C, Winslow D, Newberry J, Edwards K, ... ... Singh U, et al. Peginterferon Lambda-1a for treatment of outpatients with uncomplicated COVID-19: a randomized placebo-controlled trial. Nature Communications. 12: 1967. PMID 33785743 DOI: 10.1038/s41467-021-22177-1  0.029
2022 William J, Masih K, Pradhan U, Kaur J, Singh U, Singh G. Efficacy of Modified Masood Scoring System (MMSS) in Cytological Diagnosis of Breast Lesions. Cureus. 14: e22296. PMID 35350524 DOI: 10.7759/cureus.22296  0.026
2024 Li J, Clancy N, Singh U, Sears C. 2023: Looking Back and Looking Ahead. The Journal of Infectious Diseases. PMID 38386686 DOI: 10.1093/infdis/jiae076  0.024
2013 Choudhary A, Gulati S, Kabra M, Singh UP, Sankhyan N, Pandey RM, Kalra V. Efficacy of modified constraint induced movement therapy in improving upper limb function in children with hemiplegic cerebral palsy: a randomized controlled trial. Brain & Development. 35: 870-6. PMID 23238223 DOI: 10.1016/j.braindev.2012.11.001  0.024
2022 McCarthy MW, Naggie S, Boulware DR, Lindsell CJ, Stewart TG, Felker GM, Jayaweera D, Sulkowski M, Gentile N, Bramante C, Singh U, Dolor RJ, Ruiz-Unger J, Wilson S, DeLong A, et al. Fluvoxamine for Outpatient Treatment of COVID-19: A Decentralized, Placebo-controlled, Randomized, Platform Clinical Trial. Medrxiv : the Preprint Server For Health Sciences. PMID 36299427 DOI: 10.1101/2022.10.17.22281178  0.016
2023 Gupta J, Gulati S, Singh UP, Kumar A, Jauhari P, Chakrabarty B, Pandey RM, Bhatia R, Jain S, Srivastava A. Brain Stimulation and Constraint Induced Movement Therapy in Children With Unilateral Cerebral Palsy: A Randomized Controlled Trial. Neurorehabilitation and Neural Repair. 15459683231174222. PMID 37170480 DOI: 10.1177/15459683231174222  0.011
2023 McCarthy MW, Naggie S, Boulware DR, Lindsell CJ, Stewart TG, Felker GM, Jayaweera D, Sulkowski M, Gentile N, Bramante C, Singh U, Dolor RJ, Ruiz-Unger J, Wilson S, DeLong A, et al. Effect of Fluvoxamine vs Placebo on Time to Sustained Recovery in Outpatients With Mild to Moderate COVID-19: A Randomized Clinical Trial. Jama. PMID 36633838 DOI: 10.1001/jama.2022.24100  0.011
2015 Curtis C, Gamez JE, Singh U, Sadowsky CH, Villena T, Sabbagh MN, Beach TG, Duara R, Fleisher AS, Frey KA, Walker Z, Hunjan A, Holmes C, Escovar YM, Vera CX, et al. Phase 3 trial of flutemetamol labeled with radioactive fluorine 18 imaging and neuritic plaque density. Jama Neurology. 72: 287-94. PMID 25622185 DOI: 10.1001/Jamaneurol.2014.4144  0.01
2011 Kappagoda S, Singh U, Blackburn BG. Antiparasitic therapy. Mayo Clinic Proceedings. 86: 561-83. PMID 21628620 DOI: 10.4065/mcp.2011.0203  0.01
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