Benjamin A. Neely, Ph.D. - Publications

2010 Medical University of South Carolina, Charleston, SC, United States 
Microbiology Biology

36 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Albery GF, Becker DJ, Brierley L, Brook CE, Christofferson RC, Cohen LE, Dallas TA, Eskew EA, Fagre A, Farrell MJ, Glennon E, Guth S, Joseph MB, Mollentze N, Neely BA, et al. The science of the host-virus network. Nature Microbiology. 6: 1483-1492. PMID 34819645 DOI: 10.1038/s41564-021-00999-5  1
2021 Neely BA, Palmblad M. Rewinding the Molecular Clock: Looking at Pioneering Molecular Phylogenetics Experiments in the Light of Proteomics. Journal of Proteome Research. 20: 4640-4645. PMID 34523928 DOI: 10.1021/acs.jproteome.1c00528  0.12
2021 Khudyakov JI, Treat MD, Shanafelt MC, Deyarmin JS, Neely BA, van Breukelen F. The liver proteome response to torpor in a basoendothermic mammal, Tenrec ecaudatus, provides insights into the evolution of homeothermy. American Journal of Physiology. Regulatory, Integrative and Comparative Physiology. PMID 34431404 DOI: 10.1152/ajpregu.00150.2021  0.01
2021 Peart CR, Williams C, Pophaly SD, Neely BA, Gulland FMD, Adams DJ, Ng BL, Cheng W, Goebel ME, Fedrigo O, Haase B, Mountcastle J, Fungtammasan A, Formenti G, Collins J, et al. Hi-C scaffolded short- and long-read genome assemblies of the California sea lion are broadly consistent for syntenic inference across 45 million years of evolution. Molecular Ecology Resources. PMID 34097816 DOI: 10.1111/1755-0998.13443  1
2021 Grandal M, Hoggard M, Neely B, Davis WC, Marí F. Proteogenomic Assessment of Intraspecific Venom Variability: Molecular Adaptations in the Venom Arsenal of Conus purpurascens. Molecular & Cellular Proteomics : McP. 100100. PMID 34029722 DOI: 10.1016/j.mcpro.2021.100100  1
2021 Neely BA, Janech MG, Fenton MB, Simmons NB, Bland AM, Becker DJ. Surveying the Vampire Bat () Serum Proteome: A Resource for Identifying Immunological Proteins and Detecting Pathogens. Journal of Proteome Research. PMID 33840197 DOI: 10.1021/acs.jproteome.0c00995  1
2021 Neely BA. Cloudy with a Chance of Peptides: Accessibility, Scalability, and Reproducibility with Cloud-Hosted Environments. Journal of Proteome Research. PMID 33513299 DOI: 10.1021/acs.jproteome.0c00920  0.01
2020 Heck M, Neely BA. Proteomics in non-model organisms: a new analytical frontier. Journal of Proteome Research. PMID 32786681 DOI: 10.1021/Acs.Jproteome.0C00448  1
2020 Heck M, Neely BA. Proteomics inNon-model Organisms: A New AnalyticalFrontier Journal of Proteome Research. DOI: 10.1021/Acs.Jproteome.0C00448.S001  1
2019 Davis WC, Kilpatrick LE, Ellisor DL, Neely BA. Characterization of a human liver reference material fit for proteomics applications. Scientific Data. 6: 324. PMID 31852895 DOI: 10.1038/S41597-019-0336-7  1
2019 Saito MA, Bertrand EM, Duffy ME, Gaylord DA, Held NA, Hervey WJ, Hettich RL, Jagtap P, Janech MG, Kinkade DB, Leary D, McIlvin M, Moore E, Morris R, Neely BA, et al. Progress and Challenges in Ocean Metaproteomics and Proposed Best Practices for Data Sharing. Journal of Proteome Research. PMID 30702898 DOI: 10.1021/Acs.Jproteome.8B00761  1
2018 Neely BA, Prager K, Bland AM, Fontaine C, Gulland FM, Janech MG. Proteomic Analysis of Urine from California Sea Lions (Zalophus californianus): a Resource for Urinary Biomarker Discovery. Journal of Proteome Research. PMID 30113852 DOI: 10.1021/Acs.Jproteome.8B00416  1
2018 Mulligan JK, Patel K, Williamson T, Reaves N, Carroll W, Stephenson SE, Gao P, Drake RR, Neely BA, Tomlinson S, Schlosser RJ, Atkinson C. C3a receptor antagonism as a novel therapeutic target for chronic rhinosinusitis. Mucosal Immunology. PMID 29907871 DOI: 10.1038/S41385-018-0048-X  1
2017 Zambrano JN, Neely BA, Yeh ES. Hormonally Up-regulated Neu-associated Kinase: A novel target for breast cancer progression. Pharmacological Research. PMID 28189783 DOI: 10.1016/J.Phrs.2017.02.007  0.01
2016 Shao S, Neely BA, Kao TC, Eckhaus J, Bourgeois J, Brooks J, Jones EE, Drake RR, Zhu K. Proteomic profiling of serial pre-diagnostic serum samples for early detection of colon cancer in the U.S. military. Cancer Epidemiology, Biomarkers & Prevention : a Publication of the American Association For Cancer Research, Cosponsored by the American Society of Preventive Oncology. PMID 28003179 DOI: 10.1158/1055-9965.Epi-16-0732  1
2016 Neely BA, Wilkins CE, Marlow LA, Malyarenko D, Kim Y, Ignatchenko A, Sasinowska H, Sasinowski M, Nyalwidhe JO, Kislinger T, Copland JA, Drake RR. Proteotranscriptomic Analysis Reveals Stage Specific Changes in the Molecular Landscape of Clear-Cell Renal Cell Carcinoma. Plos One. 11: e0154074. PMID 27128972 DOI: 10.1371/Journal.Pone.0154074  1
2015 Hobeika L, Hunt KJ, Neely BA, Arthur JM. Comparison of the Rate of Renal Function Decline in NonProteinuric Patients With and Without Diabetes. The American Journal of the Medical Sciences. 350: 447-52. PMID 26624901 DOI: 10.1097/Maj.0000000000000583  1
2015 Pehar M, Ball LE, Sharma DR, Harlan BA, Comte-Walters S, Neely BA, Vargas MR. Changes in protein expression and lysine acetylation induced by decreased glutathione levels in astrocytes. Molecular & Cellular Proteomics : McP. PMID 26486419 DOI: 10.1074/Mcp.M115.049288  1
2015 Neely BA, Soper JL, Gulland FM, Bell PD, Kindy M, Arthur JM, Janech MG. Proteomic analysis of cerebrospinal fluid in California sea lions (Zalophus californianus) with domoic acid toxicosis identifies proteins associated with neurodegeneration. Proteomics. PMID 26364553 DOI: 10.1002/Pmic.201500167  1
2015 Drake RR, Powers TW, Neely BA. Abstract 540: A MALDI imaging mass spectrometry approach using tissue microarrays to identify an N-glycan biomarker panel for pancreatic cancers Cancer Research. 75: 540-540. DOI: 10.1158/1538-7445.Am2015-540  1
2014 Neely BA, Ferrante JA, Chaves JM, Soper JL, Almeida JS, Arthur JM, Gulland FM, Janech MG. Proteomic Analysis of Plasma from California Sea Lions (Zalophus californianus) Reveals Apolipoprotein E as a Candidate Biomarker of Chronic Domoic Acid Toxicosis. Plos One. 10: e0123295. PMID 25919366 DOI: 10.1371/Journal.Pone.0123295  1
2014 Powers TW, Neely BA, Shao Y, Tang H, Troyer DA, Mehta AS, Haab BB, Drake RR. MALDI imaging mass spectrometry profiling of N-glycans in formalin-fixed paraffin embedded clinical tissue blocks and tissue microarrays. Plos One. 9: e106255. PMID 25184632 DOI: 10.1371/Journal.Pone.0106255  1
2014 Jones EE, Powers TW, Neely BA, Cazares LH, Troyer DA, Parker AS, Drake RR. MALDI imaging mass spectrometry profiling of proteins and lipids in clear cell renal cell carcinoma. Proteomics. 14: 924-35. PMID 24497498 DOI: 10.1002/Pmic.201300434  1
2014 Arthur JM, Hill EG, Alge JL, Lewis EC, Neely BA, Janech MG, Tumlin JA, Chawla LS, Shaw AD. Evaluation of 32 urine biomarkers to predict the progression of acute kidney injury after cardiac surgery. Kidney International. 85: 431-8. PMID 24005224 DOI: 10.1038/Ki.2013.333  1
2013 Venn-Watson S, Smith CR, Stevenson S, Parry C, Daniels R, Jensen E, Cendejas V, Balmer B, Janech M, Neely BA, Wells R. Blood-Based Indicators of Insulin Resistance and Metabolic Syndrome in Bottlenose Dolphins (Tursiops truncatus). Frontiers in Endocrinology. 4: 136. PMID 24130551 DOI: 10.3389/Fendo.2013.00136  1
2013 Neely BA, Carlin KP, Arthur JM, McFee WE, Janech MG. Ratiometric Measurements of Adiponectin by Mass Spectrometry in Bottlenose Dolphins (Tursiops truncatus) with Iron Overload Reveal an Association with Insulin Resistance and Glucagon. Frontiers in Endocrinology. 4: 132. PMID 24065958 DOI: 10.3389/Fendo.2013.00132  1
2013 Alge JL, Karakala N, Neely BA, Janech MG, Tumlin JA, Chawla LS, Shaw AD, Arthur JM. Association of elevated urinary concentration of renin-angiotensin system components and severe AKI. Clinical Journal of the American Society of Nephrology : Cjasn. 8: 2043-52. PMID 24009222 DOI: 10.2215/Cjn.03510413  1
2013 Roper SM, Zemskova M, Neely BA, Martin A, Gao P, Jones EE, Kraft AS, Drake RR. Targeted glycoprotein enrichment and identification in stromal cell secretomes using azido sugar metabolic labeling. Proteomics. Clinical Applications. 7: 367-71. PMID 23687070 DOI: 10.1002/Prca.201300006  1
2013 Alge JL, Karakala N, Neely BA, Janech MG, Velez JC, Arthur JM. Urinary angiotensinogen predicts adverse outcomes among acute kidney injury patients in the intensive care unit. Critical Care (London, England). 17: R69. PMID 23587112 DOI: 10.1186/Cc12612  1
2013 Bhensdadia NM, Hunt KJ, Lopes-Virella MF, Michael Tucker J, Mataria MR, Alge JL, Neely BA, Janech MG, Arthur JM. Urine haptoglobin levels predict early renal functional decline in patients with type 2 diabetes. Kidney International. 83: 1136-43. PMID 23536133 DOI: 10.1038/Ki.2013.57  1
2013 Alge JL, Karakala N, Neely BA, Janech MG, Tumlin JA, Chawla LS, Shaw AD, Arthur JM. Urinary angiotensinogen and risk of severe AKI. Clinical Journal of the American Society of Nephrology : Cjasn. 8: 184-93. PMID 23143504 DOI: 10.2215/Cjn.06280612  1
2012 Korrapati MC, Shaner BE, Neely BA, Alge JL, Arthur JM, Schnellmann RG. Diabetes-induced renal injury in rats is attenuated by suramin. The Journal of Pharmacology and Experimental Therapeutics. 343: 34-43. PMID 22736507 DOI: 10.1124/Jpet.112.196964  1
2012 Neely BA, Soper JL, Greig DJ, Carlin KP, Favre EG, Gulland FM, Almeida JS, Janech MG. Serum profiling by MALDI-TOF mass spectrometry as a diagnostic tool for domoic acid toxicosis in California sea lions. Proteome Science. 10: 18. PMID 22429742 DOI: 10.1186/1477-5956-10-18  1
2008 Van Nostrand JD, Arthur JM, Kilpatrick LE, Neely BA, Bertsch PM, Morris PJ. Changes in protein expression in Burkholderia vietnamiensis PR1 301 at pH 5 and 7 with and without nickel. Microbiology (Reading, England). 154: 3813-24. PMID 19047749 DOI: 10.1099/Mic.0.2008/017178-0  1
2007 Van Nostrand JD, Khijniak TJ, Neely B, Sattar MA, Sowder AG, Mills G, Bertsch PM, Morris PJ. Reduction of nickel and uranium toxicity and enhanced trichloroethylene degradation to Burkholderia vietnamiensis PR1301 with hydroxyapatite amendment. Environmental Science & Technology. 41: 1877-82. PMID 17410778 DOI: 10.1021/Es0616581  1
2003 Podust LM, Kim Y, Arase M, Neely BA, Beck BJ, Bach H, Sherman DH, Lamb DC, Kelly SL, Waterman MR. The 1.92-A structure of Streptomyces coelicolor A3(2) CYP154C1. A new monooxygenase that functionalizes macrolide ring systems. The Journal of Biological Chemistry. 278: 12214-21. PMID 12519772 DOI: 10.1074/Jbc.M212210200  1
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