James R. Alfano - Publications

Plant Pathology The University of Nebraska - Lincoln, Lincoln, NE 
Plant Pathology Agriculture, Molecular Biology, Microbiology Biology

66 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Meier MA, Lopez-Guerrero MG, Guo M, Schmer MR, Herr JR, Schnable JC, Alfano JR, Yang J. Rhizosphere Microbiomes in a Historical Maize/Soybean Rotation System respond to Host Species and Nitrogen Fertilization at Genus and Sub-genus Levels. Applied and Environmental Microbiology. PMID 33811028 DOI: 10.1128/AEM.03132-20  1
2020 Aung K, Kim P, Li Z, Joe A, Kvitko B, Alfano JR, He SY. Pathogenic Bacteria Target Plant Plasmodesmata to Colonize and Invade Surrounding Tissues[CC-BY]. The Plant Cell. 32: 595-611. PMID 33589903 DOI: 10.1105/tpc.19.00707  1
2019 Aung K, Kim P, Li Z, Joe A, Kvitko BH, Alfano JR, He SY. Pathogenic bacteria target plant plasmodesmata to colonize and invade surrounding tissues. The Plant Cell. PMID 31888968 DOI: 10.1105/Tpc.19.00707  1
2019 Singh A, Li G, Brohammer AB, Jarquin D, Hirsch CN, Alfano JR, Lorenz AJ. Genome-Wide Association and Gene Co-expression Network Analyses Reveal Complex Genetics of Resistance to Goss's Wilt of Maize. G3 (Bethesda, Md.). PMID 31362973 DOI: 10.1534/G3.119.400347  1
2019 Chang M, Zhao J, Chen H, Li G, Chen J, Li M, Palmer IA, Song J, Alfano JR, Liu F, Fu ZQ. PBS3 protects EDS1 from proteasome-mediated degradation in plant immunity. Molecular Plant. PMID 30763614 DOI: 10.1016/J.Molp.2019.01.023  1
2018 Yang F, Kimberlin AN, Elowsky CG, Liu Y, Gonzalez-Solis A, Cahoon EB, Alfano JR. A Plant Immune Receptor Degraded by Selective Autophagy. Molecular Plant. PMID 30508598 DOI: 10.1016/J.Molp.2018.11.011  1
2017 Chen H, Chen J, Li M, Chang M, Xu K, Shang Z, Zhao Y, Palmer I, Zhang Y, McGill J, Alfano JR, Nishimura MT, Liu F, Fu ZQ. A Bacterial Type III Effector Targets the Master Regulator of Salicylic Acid Signaling, NPR1, to Subvert Plant Immunity. Cell Host & Microbe. 22: 777-788.e7. PMID 29174403 DOI: 10.1016/J.Chom.2017.10.019  0.48
2017 Medina CA, Reyes PA, Trujillo CA, Gonzalez JL, Bejarano DA, Montenegro NA, Jacobs JM, Joe A, Restrepo S, Alfano JR, Bernal AJ. The role of type three effectors from Xanthomonas axonopodis pv. manihotis in virulence and suppression of plant immunity. Molecular Plant Pathology. PMID 28218447 DOI: 10.1111/Mpp.12545  0.36
2016 Li L, Kim P, Yu L, Cai G, Chen S, Alfano JR, Zhou JM. Activation-Dependent Destruction of a Co-receptor by a Pseudomonas syringae Effector Dampens Plant Immunity. Cell Host & Microbe. 20: 504-514. PMID 27736646 DOI: 10.1016/J.Chom.2016.09.007  1
2016 Guo M, Kim P, Li G, Elowsky CG, Alfano JR. A Bacterial Effector Co-opts Calmodulin to Target the Plant Microtubule Network. Cell Host & Microbe. 19: 67-78. PMID 26764598 DOI: 10.1016/J.Chom.2015.12.007  1
2015 Zhang L, Alfano JR, Becker DF. Proline metabolism increases katG expression and oxidative stress resistance in Escherichia coli. Journal of Bacteriology. 197: 431-40. PMID 25384482 DOI: 10.1128/Jb.02282-14  1
2014 Block A, Toruño TY, Elowsky CG, Zhang C, Steinbrenner J, Beynon J, Alfano JR. The Pseudomonas syringae type III effector HopD1 suppresses effector-triggered immunity, localizes to the endoplasmic reticulum, and targets the Arabidopsis transcription factor NTL9. The New Phytologist. 201: 1358-70. PMID 24329768 DOI: 10.1111/Nph.12626  1
2014 Li G, Froehlich JE, Elowsky C, Msanne J, Ostosh AC, Zhang C, Awada T, Alfano JR. Distinct Pseudomonas type-III effectors use a cleavable transit peptide to target chloroplasts. The Plant Journal : For Cell and Molecular Biology. 77: 310-21. PMID 24299018 DOI: 10.1111/Tpj.12396  1
2013 Misas-Villamil JC, Kolodziejek I, Crabill E, Kaschani F, Niessen S, Shindo T, Kaiser M, Alfano JR, van der Hoorn RA. Pseudomonas syringae pv. syringae uses proteasome inhibitor syringolin A to colonize from wound infection sites. Plos Pathogens. 9: e1003281. PMID 23555272 DOI: 10.1371/Journal.Ppat.1003281  1
2013 Nicaise V, Joe A, Jeong BR, Korneli C, Boutrot F, Westedt I, Staiger D, Alfano JR, Zipfel C. Pseudomonas HopU1 modulates plant immune receptor levels by blocking the interaction of their mRNAs with GRP7. The Embo Journal. 32: 701-12. PMID 23395902 DOI: 10.1038/Emboj.2013.15  1
2012 Guo M, Block A, Bryan CD, Becker DF, Alfano JR. Pseudomonas syringae Catalases Are Collectively Required for Plant Pathogenesis. Journal of Bacteriology. 194: 5054-64. PMID 22797762 DOI: 10.1128/Jb.00999-12  1
2012 Crabill E, Karpisek A, Alfano JR. The Pseudomonas syringae HrpJ protein controls the secretion of type III translocator proteins and has a virulence role inside plant cells. Molecular Microbiology. 85: 225-38. PMID 22607547 DOI: 10.1111/J.1365-2958.2012.08097.X  1
2011 Jeong BR, Lin Y, Joe A, Guo M, Korneli C, Yang H, Wang P, Yu M, Cerny RL, Staiger D, Alfano JR, Xu Y. Structure function analysis of an ADP-ribosyltransferase type III effector and its RNA-binding target in plant immunity. The Journal of Biological Chemistry. 286: 43272-81. PMID 22013065 DOI: 10.1074/Jbc.M111.290122  1
2011 Block A, Alfano JR. Plant targets for Pseudomonas syringae type III effectors: virulence targets or guarded decoys? Current Opinion in Microbiology. 14: 39-46. PMID 21227738 DOI: 10.1016/J.Mib.2010.12.011  1
2011 Mavrodi DV, Joe A, Mavrodi OV, Hassan KA, Weller DM, Paulsen IT, Loper JE, Alfano JR, Thomashow LS. Structural and functional analysis of the type III secretion system from Pseudomonas fluorescens Q8r1-96. Journal of Bacteriology. 193: 177-89. PMID 20971913 DOI: 10.1128/Jb.00895-10  1
2010 Qi Y, Tsuda K, Joe A, Sato M, Nguyen le V, Glazebrook J, Alfano JR, Cohen JD, Katagiri F. A putative RNA-binding protein positively regulates salicylic acid-mediated immunity in Arabidopsis. Molecular Plant-Microbe Interactions : Mpmi. 23: 1573-83. PMID 20636102 DOI: 10.1094/Mpmi-05-10-0106  1
2010 Crabill E, Joe A, Block A, van Rooyen JM, Alfano JR. Plant immunity directly or indirectly restricts the injection of type III effectors by the Pseudomonas syringae type III secretion system. Plant Physiology. 154: 233-44. PMID 20624999 DOI: 10.1104/Pp.110.159723  1
2010 Block A, Guo M, Li G, Elowsky C, Clemente TE, Alfano JR. The Pseudomonas syringae type III effector HopG1 targets mitochondria, alters plant development and suppresses plant innate immunity. Cellular Microbiology. 12: 318-30. PMID 19863557 DOI: 10.1111/J.1462-5822.2009.01396.X  1
2009 Walton JD, Avis TJ, Alfano JR, Gijzen M, Spanu P, Hammond-Kosack K, Sánchez F. Effectors, effectors et encore des effectors: the XIV International Congress on Molecular-Plant Microbe Interactions, Quebec. Molecular Plant-Microbe Interactions : Mpmi. 22: 1479-83. PMID 19888813 DOI: 10.1094/Mpmi-22-12-1479  1
2009 Alfano JR. Roadmap for future research on plant pathogen effectors. Molecular Plant Pathology. 10: 805-13. PMID 19849786 DOI: 10.1111/J.1364-3703.2009.00588.X  1
2009 Guo M, Tian F, Wamboldt Y, Alfano JR. The majority of the type III effector inventory of Pseudomonas syringae pv. tomato DC3000 can suppress plant immunity. Molecular Plant-Microbe Interactions : Mpmi. 22: 1069-80. PMID 19656042 DOI: 10.1094/Mpmi-22-9-1069  1
2009 Jeong Br, van Dijk K, Alfano JR. Pseudomonas Syringae Type III-Secreted Proteins and their Activities and Effects on Plant Innate Immunity Annual Plant Reviews, Molecular Aspects of Plant Disease Resistance. 34: 48-76. DOI: 10.1002/9781444301441.ch3  1
2008 Block A, Li G, Fu ZQ, Alfano JR. Phytopathogen type III effector weaponry and their plant targets. Current Opinion in Plant Biology. 11: 396-403. PMID 18657470 DOI: 10.1016/J.Pbi.2008.06.007  1
2008 Streitner C, Danisman S, Wehrle F, Schöning JC, Alfano JR, Staiger D. The small glycine-rich RNA binding protein AtGRP7 promotes floral transition in Arabidopsis thaliana. The Plant Journal : For Cell and Molecular Biology. 56: 239-50. PMID 18573194 DOI: 10.1111/J.1365-313X.2008.03591.X  1
2007 Alvarez-Venegas R, Abdallat AA, Guo M, Alfano JR, Avramova Z. Epigenetic control of a transcription factor at the cross section of two antagonistic pathways. Epigenetics. 2: 106-13. PMID 17965588 DOI: 10.4161/Epi.2.2.4404  1
2007 Wei CF, Kvitko BH, Shimizu R, Crabill E, Alfano JR, Lin NC, Martin GB, Huang HC, Collmer A. A Pseudomonas syringae pv. tomato DC3000 mutant lacking the type III effector HopQ1-1 is able to cause disease in the model plant Nicotiana benthamiana. The Plant Journal : For Cell and Molecular Biology. 51: 32-46. PMID 17559511 DOI: 10.1111/J.1365-313X.2007.03126.X  1
2007 Fu ZQ, Guo M, Jeong BR, Tian F, Elthon TE, Cerny RL, Staiger D, Alfano JR. A type III effector ADP-ribosylates RNA-binding proteins and quells plant immunity. Nature. 447: 284-8. PMID 17450127 DOI: 10.1038/Nature05737  1
2006 Vencato M, Tian F, Alfano JR, Buell CR, Cartinhour S, DeClerck GA, Guttman DS, Stavrinides J, Joardar V, Lindeberg M, Bronstein PA, Mansfield JW, Myers CR, Collmer A, Schneider DJ. Bioinformatics-enabled identification of the HrpL regulon and type III secretion system effector proteins of Pseudomonas syringae pv. phaseolicola 1448A. Molecular Plant-Microbe Interactions : Mpmi. 19: 1193-206. PMID 17073302 DOI: 10.1094/Mpmi-19-1193  1
2006 Ferreira AO, Myers CR, Gordon JS, Martin GB, Vencato M, Collmer A, Wehling MD, Alfano JR, Moreno-Hagelsieb G, Lamboy WF, DeClerck G, Schneider DJ, Cartinhour SW. Whole-genome expression profiling defines the HrpL regulon of Pseudomonas syringae pv. tomato DC3000, allows de novo reconstruction of the Hrp cis clement, and identifies novel coregulated genes. Molecular Plant-Microbe Interactions : Mpmi. 19: 1167-79. PMID 17073300 DOI: 10.1094/Mpmi-19-1167  1
2006 Fu ZQ, Guo M, Alfano JR. Pseudomonas syringae HrpJ is a type III secreted protein that is required for plant pathogenesis, injection of effectors, and secretion of the HrpZ1 Harpin. Journal of Bacteriology. 188: 6060-9. PMID 16923873 DOI: 10.1128/Jb.00718-06  1
2005 Guo M, Chancey ST, Tian F, Ge Z, Jamir Y, Alfano JR. Pseudomonas syringae type III chaperones ShcO1, ShcS1, and ShcS2 facilitate translocation of their cognate effectors and can substitute for each other in the secretion of HopO1-1. Journal of Bacteriology. 187: 4257-69. PMID 15937188 DOI: 10.1128/Jb.187.12.4257-4269.2005  1
2005 Lindeberg M, Stavrinides J, Chang JH, Alfano JR, Collmer A, Dangl JL, Greenberg JT, Mansfield JW, Guttman DS. Proposed guidelines for a unified nomenclature and phylogenetic analysis of type III Hop effector proteins in the plant pathogen Pseudomonas syringae. Molecular Plant-Microbe Interactions : Mpmi. 18: 275-82. PMID 15828679 DOI: 10.1094/Mpmi-18-0275  1
2005 Petnicki-Ocwieja T, van Dijk K, Alfano JR. The hrpK operon of Pseudomonas syringae pv. tomato DC3000 encodes two proteins secreted by the type III (Hrp) protein secretion system: HopB1 and HrpK, a putative type III translocator. Journal of Bacteriology. 187: 649-63. PMID 15629936 DOI: 10.1128/Jb.187.2.649-663.2005  1
2004 Espinosa A, Alfano JR. Disabling surveillance: bacterial type III secretion system effectors that suppress innate immunity. Cellular Microbiology. 6: 1027-40. PMID 15469432 DOI: 10.1111/J.1462-5822.2004.00452.X  1
2004 Alfano JR, Collmer A. Type III secretion system effector proteins: double agents in bacterial disease and plant defense. Annual Review of Phytopathology. 42: 385-414. PMID 15283671 DOI: 10.1146/Annurev.Phyto.42.040103.110731  1
2004 Wehling MD, Guo M, Fu ZQ, Alfano JR. The Pseudomonas syringae HopPtoV protein is secreted in culture and translocated into plant cells via the type III protein secretion system in a manner dependent on the ShcV type III chaperone. Journal of Bacteriology. 186: 3621-30. PMID 15150250 DOI: 10.1128/Jb.186.11.3621-3630.2004  1
2004 Shan L, Oh HS, Chen J, Guo M, Zhou J, Alfano JR, Collmer A, Jia X, Tang X. The HopPtoF locus of Pseudomonas syringae pv. tomato DC3000 encodes a type III chaperone and a cognate effector. Molecular Plant-Microbe Interactions : Mpmi. 17: 447-55. PMID 15141948 DOI: 10.1094/Mpmi.2004.17.5.447  1
2004 Ham JH, Cui Y, Alfano JR, Rodríguez-Palenzuela P, Rojas CM, Chatterjee AK, Collmer A. Analysis of Erwinia chrysanthemi EC16 pelE::uidA, pelL::uidA, and hrpN::uidA mutants reveals strain-specific atypical regulation of the Hrp type III secretion system. Molecular Plant-Microbe Interactions : Mpmi. 17: 184-94. PMID 14964532 DOI: 10.1094/Mpmi.2004.17.2.184  1
2004 He P, Chintamanani S, Chen Z, Zhu L, Kunkel BN, Alfano JR, Tang X, Zhou JM. Activation of a COI1-dependent pathway in Arabidopsis by Pseudomonas syringae type III effectors and coronatine. The Plant Journal : For Cell and Molecular Biology. 37: 589-602. PMID 14756769 DOI: 10.1111/J.1365-313X.2003.01986.X  1
2004 Jamir Y, Guo M, Oh HS, Petnicki-Ocwieja T, Chen S, Tang X, Dickman MB, Collmer A, Alfano JR. Identification of Pseudomonas syringae type III effectors that can suppress programmed cell death in plants and yeast. The Plant Journal : For Cell and Molecular Biology. 37: 554-65. PMID 14756767 DOI: 10.1046/J.1365-313X.2003.01982.X  1
2004 Schechter LM, Roberts KA, Jamir Y, Alfano JR, Collmer A. Pseudomonas syringae type III secretion system targeting signals and novel effectors studied with a Cya translocation reporter. Journal of Bacteriology. 186: 543-55. PMID 14702323 DOI: 10.1128/Jb.186.2.543-555.2004  1
2003 Chatterjee A, Cui Y, Yang H, Collmer A, Alfano JR, Chatterjee AK. GacA, the response regulator of a two-component system, acts as a master regulator in Pseudomonas syringae pv. tomato DC3000 by controlling regulatory RNA, transcriptional activators, and alternate sigma factors. Molecular Plant-Microbe Interactions : Mpmi. 16: 1106-17. PMID 14651344 DOI: 10.1094/Mpmi.2003.16.12.1106  1
2003 Buell CR, Joardar V, Lindeberg M, Selengut J, Paulsen IT, Gwinn ML, Dodson RJ, Deboy RT, Durkin AS, Kolonay JF, Madupu R, Daugherty S, Brinkac L, Beanan MJ, Haft DH, ... ... Alfano JR, et al. The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000. Proceedings of the National Academy of Sciences of the United States of America. 100: 10181-6. PMID 12928499 DOI: 10.1073/Pnas.1731982100  1
2003 Espinosa A, Guo M, Tam VC, Fu ZQ, Alfano JR. The Pseudomonas syringae type III-secreted protein HopPtoD2 possesses protein tyrosine phosphatase activity and suppresses programmed cell death in plants. Molecular Microbiology. 49: 377-87. PMID 12828636 DOI: 10.1046/J.1365-2958.2003.03588.X  1
2002 Collmer A, Lindeberg M, Petnicki-Ocwieja T, Schneider DJ, Alfano JR. Genomic mining type III secretion system effectors in Pseudomonas syringae yields new picks for all TTSS prospectors. Trends in Microbiology. 10: 462-9. PMID 12377556 DOI: 10.1016/S0966-842X(02)02451-4  1
2002 van Dijk K, Tam VC, Records AR, Petnicki-Ocwieja T, Alfano JR. The ShcA protein is a molecular chaperone that assists in the secretion of the HopPsyA effector from the type III (Hrp) protein secretion system of Pseudomonas syringae. Molecular Microbiology. 44: 1469-81. PMID 12067337 DOI: 10.1046/J.1365-2958.2002.02979.X  1
2002 Petnicki-Ocwieja T, Schneider DJ, Tam VC, Chancey ST, Shan L, Jamir Y, Schechter LM, Janes MD, Buell CR, Tang X, Collmer A, Alfano JR. Genomewide identification of proteins secreted by the Hrp type III protein secretion system of Pseudomonas syringae pv. tomato DC3000. Proceedings of the National Academy of Sciences of the United States of America. 99: 7652-7. PMID 12032338 DOI: 10.1073/Pnas.112183899  1
2002 Kim JF, Alfano JR. Pathogenicity islands and virulence plasmids of bacterial plant pathogens. Current Topics in Microbiology and Immunology. 264: 127-47. PMID 12012865  1
2002 Fouts DE, Abramovitch RB, Alfano JR, Baldo AM, Buell CR, Cartinhour S, Chatterjee AK, D'Ascenzo M, Gwinn ML, Lazarowitz SG, Lin NC, Martin GB, Rehm AH, Schneider DJ, van Dijk K, et al. Genomewide identification of Pseudomonas syringae pv. tomato DC3000 promoters controlled by the HrpL alternative sigma factor. Proceedings of the National Academy of Sciences of the United States of America. 99: 2275-80. PMID 11854524 DOI: 10.1073/Pnas.032514099  1
2000 Collmer A, Badel JL, Charkowski AO, Deng WL, Fouts DE, Ramos AR, Rehm AH, Anderson DM, Schneewind O, van Dijk K, Alfano JR. Pseudomonas syringae Hrp type III secretion system and effector proteins. Proceedings of the National Academy of Sciences of the United States of America. 97: 8770-7. PMID 10922033 DOI: 10.1073/Pnas.97.16.8770  1
2000 Alfano JR, Charkowski AO, Deng WL, Badel JL, Petnicki-Ocwieja T, van Dijk K, Collmer A. The Pseudomonas syringae Hrp pathogenicity island has a tripartite mosaic structure composed of a cluster of type III secretion genes bounded by exchangeable effector and conserved effector loci that contribute to parasitic fitness and pathogenicity in plants. Proceedings of the National Academy of Sciences of the United States of America. 97: 4856-61. PMID 10781092 DOI: 10.1073/Pnas.97.9.4856  1
1999 van Dijk K, Fouts DE, Rehm AH, Hill AR, Collmer A, Alfano JR. The Avr (effector) proteins HrmA (HopPsyA) and AvrPto are secreted in culture from Pseudomonas syringae pathovars via the Hrp (type III) protein secretion system in a temperature- and pH-sensitive manner. Journal of Bacteriology. 181: 4790-7. PMID 10438746 DOI: 10.1128/Jb.181.16.4790-4797.1999  1
1998 Charkowski AO, Alfano JR, Preston G, Yuan J, He SY, Collmer A. The Pseudomonas syringae pv. tomato HrpW protein has domains similar to harpins and pectate lyases and can elicit the plant hypersensitive response and bind to pectate Journal of Bacteriology. 180: 5211-5217. PMID 9748456 DOI: 10.1128/Jb.180.19.5211-5217.1998  1
1998 Kim JF, Charkowski AO, Alfano JR, Collmer A, Beer SV. Sequences related to transposable elements and bacteriophages flank avirulence genes of Pseudomonas syringae Molecular Plant-Microbe Interactions. 11: 1247-1252. DOI: 10.1094/Mpmi.1998.11.12.1247  1
1997 Alfano JR, Collmer A. The type III (Hrp) secretion pathway of plant pathogenic bacteria: Trafficking harpins, Avr proteins, and death Journal of Bacteriology. 179: 5655-5662. PMID 9294418 DOI: 10.1128/Jb.179.18.5655-5662.1997  1
1997 Alfano JR, Kim HS, Delaney TP, Collmer A. Evidence that the Pseudomonas syringae pv. syringae hrp-Linked hrmA gene encodes an Avr-like protein that acts in an hrp-dependent manner within tobacco cells Molecular Plant-Microbe Interactions. 10: 580-588. PMID 9204563 DOI: 10.1094/Mpmi.1997.10.5.580  1
1996 Alfano JR, Bauer DW, Milos TM, Collmer A. Analysis of the role of the Pseudomonas syringae pv. syringae HrpZ harpin in elicitation of the hypersensitive response in tobacco using functionally non-polar hrpZ deletion mutations, truncated HrpZ fragments, and hrmA mutations Molecular Microbiology. 19: 715-728. PMID 8820642 DOI: 10.1046/J.1365-2958.1996.415946.X  1
1996 Gopalan S, Bauer DW, Alfano JR, Loniello AO, He SY, Collmer A. Expression of the Pseudomonas syringae avirulence protein AvrB in plant cells alleviates its dependence on the hypersensitive response and pathogenicity (Hrp) secretion system in eliciting genotype-specific hypersensitive cell death Plant Cell. 8: 1095-1105. PMID 8768370 DOI: 10.1105/tpc.8.7.1095  1
1996 Alfano JR, Collmer A. Bacterial pathogens in plants: Life up against the wall Plant Cell. 8: 1683-1698. DOI: 10.1105/Tpc.8.10.1683  1
1995 Alfano JR, Jong Hyun Ham, Collmer A. Use of Tn5tac1 to clone a pel gene encoding a highly alkaline, asparagine- rich pectate lyase isozyme from an Erwinia chrysanthemi EC16 mutant with deletions affecting the major pectate lyase isozymes Journal of Bacteriology. 177: 4553-4556. PMID 7635842 DOI: 10.1128/Jb.177.15.4553-4556.1995  1
1993 Alfano JR, Kahn ML. Isolation and characterization of a gene coding for a novel aspartate aminotransferase from Rhizobium meliloti Journal of Bacteriology. 175: 4186-4196. PMID 8320232  1
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