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Jason A. Holliday - Publications

Affiliations: 
Virginia Polytechnic Institute and State University, Blacksburg, VA, United States 
Area:
Evolutionary genomics
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32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Whiting JR, Booker TR, Rougeux C, Lind BM, Singh P, Lu M, Huang K, Whitlock MC, Aitken SN, Andrew RL, Borevitz JO, Bruhl JJ, Collins TL, Fischer MC, Hodgins KA, ... Holliday JA, et al. The genetic architecture of repeated local adaptation to climate in distantly related plants. Nature Ecology & Evolution. PMID 39187610 DOI: 10.1038/s41559-024-02514-5  0.754
2024 Sandercock AM, Westbrook JW, Zhang Q, Holliday JA. A genome-guided strategy for climate resilience in American chestnut restoration populations. Proceedings of the National Academy of Sciences of the United States of America. 121: e2403505121. PMID 39012830 DOI: 10.1073/pnas.2403505121  0.498
2024 Bolte CE, Phannareth T, Zavala-Paez M, Sutara BN, Can MF, Fitzpatrick MC, Holliday JA, Keller SR, Hamilton JA. Genomic insights into hybrid zone formation: The role of climate, landscape, and demography in the emergence of a novel hybrid lineage. Molecular Ecology. e17430. PMID 38867593 DOI: 10.1111/mec.17430  0.716
2023 Zavala-Paez M, Holliday J, Hamilton JA. Leveraging whole-genome sequencing to estimate telomere length in plants. Molecular Ecology Resources. 24: e13899. PMID 37966130 DOI: 10.1111/1755-0998.13899  0.613
2022 Sandercock AM, Westbrook JW, Zhang Q, Johnson HA, Saielli TM, Scrivani JA, Fitzsimmons SF, Collins K, Perkins MT, Craddock JH, Schmutz J, Grimwood J, Holliday JA. Frozen in time: rangewide genomic diversity, structure, and demographic history of relict American chestnut populations. Molecular Ecology. PMID 35880415 DOI: 10.1111/mec.16629  0.447
2020 Westbrook JW, Zhang Q, Mandal MK, Jenkins EV, Barth LE, Jenkins JW, Grimwood J, Schmutz J, Holliday JA. Optimizing genomic selection for blight resistance in American chestnut backcross populations: A trade-off with American chestnut ancestry implies resistance is polygenic. Evolutionary Applications. 13: 31-47. PMID 31892942 DOI: 10.1111/Eva.12886  0.443
2020 Isabel N, Holliday JA, Aitken SN. Forest genomics: Advancing climate adaptation, forest health, productivity, and conservation. Evolutionary Applications. 13: 3-10. PMID 31892941 DOI: 10.1111/Eva.12902  0.682
2020 Staton M, Addo-Quaye C, Cannon N, Yu J, Zhebentyayeva T, Huff M, Islam-Faridi N, Fan S, Georgi LL, Nelson CD, Bellis E, Fitzsimmons S, Henry N, Drautz-Moses D, Noorai RE, ... ... Holliday J, et al. “A reference genome assembly and adaptive trait analysis of Castanea mollissima ‘Vanuxem,’ a source of resistance to chestnut blight in restoration breeding” Tree Genetics & Genomes. 16: 57. DOI: 10.1007/S11295-020-01454-Y  0.511
2019 Guerra FP, Suren H, Holliday J, Richards JH, Fiehn O, Famula R, Stanton BJ, Shuren R, Sykes R, Davis MF, Neale DB. Exome resequencing and GWAS for growth, ecophysiology, and chemical and metabolomic composition of wood of Populus trichocarpa. Bmc Genomics. 20: 875. PMID 31747881 DOI: 10.1186/S12864-019-6160-9  0.5
2019 Zhang M, Suren H, Holliday JA. Phenotypic and genomic local adaptation across latitude and altitude in Populus trichocarpa. Genome Biology and Evolution. PMID 31298685 DOI: 10.1093/Gbe/Evz151  0.604
2019 Acosta JJ, Fahrenkrog AM, Neves LG, Resende MFR, Dervinis C, Davis JM, Holliday JA, Kirst M. Exome re-sequencing reveals evolutionary history, genomic diversity, and targets of selection in the conifers Pinus taeda and Pinus elliottii. Genome Biology and Evolution. PMID 30689841 DOI: 10.1093/Gbe/Evz016  0.592
2016 Holliday JA, Aitken SN, Cooke JE, Fady B, González-Martínez SC, Heuertz M, Jaramillo-Correa JP, Lexer C, Staton M, Whetten RW, Plomion C. Advances in ecological genomics in forest trees and applications to genetic resources conservation and breeding. Molecular Ecology. PMID 27997049 DOI: 10.1111/Mec.13963  0.721
2016 Yeaman S, Hodgins KA, Lotterhos KE, Suren H, Nadeau S, Degner JC, Nurkowski KA, Smets P, Wang T, Gray LK, Liepe KJ, Hamann A, Holliday JA, Whitlock MC, Rieseberg LH, et al. Convergent local adaptation to climate in distantly related conifers. Science (New York, N.Y.). 353: 1431-1433. PMID 27708038 DOI: 10.1126/Science.Aaf7812  0.776
2016 Zhang M, Zhou L, Bawa R, Suren H, Holliday JA. Recombination rate variation, hitchhiking, and demographic history shape deleterious load in poplar. Molecular Biology and Evolution. PMID 27512114 DOI: 10.1093/Molbev/Msw169  0.729
2016 Suren H, Hodgins KA, Yeaman S, Nurkowski KA, Smets P, Rieseberg LH, Aitken SN, Holliday JA. Exome capture from the spruce and pine giga-genomes. Molecular Ecology Resources. PMID 27428061 DOI: 10.1111/1755-0998.12570  0.733
2015 Holliday JA, Zhou L, Bawa R, Zhang M, Oubida RW. Evidence for extensive parallelism but divergent genomic architecture of adaptation along altitudinal and latitudinal gradients in Populus trichocarpa. The New Phytologist. PMID 26372471 DOI: 10.1111/Nph.13643  0.763
2015 Oubida RW, Gantulga D, Zhang M, Zhou L, Bawa R, Holliday JA. Partitioning of multivariate phenotypes using regression trees reveals complex patterns of adaptation to climate across the range of black cottonwood (Populus trichocarpa). Frontiers in Plant Science. 6: 181. PMID 25870603 DOI: 10.3389/Fpls.2015.00181  0.724
2014 Zhou L, Bawa R, Holliday JA. Exome resequencing reveals signatures of demographic and adaptive processes across the genome and range of black cottonwood (Populus trichocarpa). Molecular Ecology. 23: 2486-99. PMID 24750333 DOI: 10.1111/Mec.12752  0.764
2014 Yeaman S, Hodgins KA, Suren H, Nurkowski KA, Rieseberg LH, Holliday JA, Aitken SN. Conservation and divergence of gene expression plasticity following c. 140 million years of evolution in lodgepole pine (Pinus contorta) and interior spruce (Picea glauca×Picea engelmannii). The New Phytologist. 203: 578-91. PMID 24750196 DOI: 10.1111/Nph.12819  0.734
2013 Manrique-Carpintero NC, Tokuhisa JG, Ginzberg I, Holliday JA, Veilleux RE. Sequence diversity in coding regions of candidate genes in the glycoalkaloid biosynthetic pathway of wild potato species. G3 (Bethesda, Md.). 3: 1467-79. PMID 23853090 DOI: 10.1534/G3.113.007146  0.449
2013 Collakova E, Klumas C, Suren H, Myers E, Heath LS, Holliday JA, Grene R. Evidence for extensive heterotrophic metabolism, antioxidant action, and associated regulatory events during winter hardening in Sitka spruce. Bmc Plant Biology. 13: 72. PMID 23631437 DOI: 10.1186/1471-2229-13-72  0.376
2013 Reid KE, Holliday JA, Yuen M, Nguyen A, Aitken SN, Bohlmann J. Sequencing of Sitka spruce (Picea sitchensis) cDNA libraries constructed from autumn buds and foliage reveals autumn-specific spruce transcripts Tree Genetics and Genomes. 9: 683-691. DOI: 10.1007/S11295-012-0584-6  0.639
2012 Zhou L, Holliday JA. Targeted enrichment of the black cottonwood (Populus trichocarpa) gene space using sequence capture. Bmc Genomics. 13: 703. PMID 23241106 DOI: 10.1186/1471-2164-13-703  0.458
2012 Grene R, Klumas C, Suren H, Yang K, Collakova E, Myers E, Heath LS, Holliday JA. Mining and visualization of microarray and metabolomic data reveal extensive cell wall remodeling during winter hardening in Sitka spruce (Picea sitchensis). Frontiers in Plant Science. 3: 241. PMID 23112803 DOI: 10.3389/Fpls.2012.00241  0.373
2012 Holliday JA, Wang T, Aitken S. Predicting adaptive phenotypes from multilocus genotypes in Sitka spruce (Picea sitchensis) using random forest. G3 (Bethesda, Md.). 2: 1085-93. PMID 22973546 DOI: 10.1534/G3.112.002733  0.692
2012 Dauwe R, Holliday JA, Aitken SN, Mansfield SD. Metabolic dynamics during autumn cold acclimation within and among populations of Sitka spruce (Picea sitchensis). The New Phytologist. 194: 192-205. PMID 22248127 DOI: 10.1111/J.1469-8137.2011.04027.X  0.654
2012 Holliday JA, Suren H, Aitken SN. Divergent selection and heterogeneous migration rates across the range of Sitka spruce (Picea sitchensis). Proceedings. Biological Sciences / the Royal Society. 279: 1675-83. PMID 22113032 DOI: 10.1098/Rspb.2011.1805  0.691
2010 Holliday JA, Yuen M, Ritland K, Aitken SN. Postglacial history of a widespread conifer produces inverse clines in selective neutrality tests. Molecular Ecology. 19: 3857-64. PMID 20738783 DOI: 10.1111/J.1365-294X.2010.04767.X  0.676
2010 Holliday JA, Ritland K, Aitken SN. Widespread, ecologically relevant genetic markers developed from association mapping of climate-related traits in Sitka spruce (Picea sitchensis). The New Phytologist. 188: 501-14. PMID 20663060 DOI: 10.1111/J.1469-8137.2010.03380.X  0.72
2008 Aitken SN, Yeaman S, Holliday JA, Wang T, Curtis-McLane S. Adaptation, migration or extirpation: climate change outcomes for tree populations. Evolutionary Applications. 1: 95-111. PMID 25567494 DOI: 10.1111/J.1752-4571.2007.00013.X  0.771
2008 Holliday JA, Ralph SG, White R, Bohlmann J, Aitken SN. Global monitoring of autumn gene expression within and among phenotypically divergent populations of Sitka spruce (Picea sitchensis). The New Phytologist. 178: 103-22. PMID 18194148 DOI: 10.1111/J.1469-8137.2007.02346.X  0.707
2004 Holliday JA, Steppan SJ. Evolution of hypercarnivory: The effect of specialization on morphological and taxonomic diversity Paleobiology. 30: 108-128. DOI: 10.1666/0094-8373(2004)030<0108:Eohteo>2.0.Co;2  0.301
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