| Year |
Citation |
Score |
| 2019 |
Wagner JR, Churas CP, Liu S, Swift RV, Chiu M, Shao C, Feher VA, Burley SK, Gilson MK, Amaro RE. Continuous Evaluation of Ligand Protein Predictions: A Weekly Community Challenge for Drug Docking. Structure (London, England : 1993). PMID 31257108 DOI: 10.1016/J.Str.2019.05.012 |
0.319 |
|
| 2016 |
Offutt TL, Swift RV, Amaro RE. Enhancing Virtual Screening Performance of Protein Kinases with Molecular Dynamics Simulations. Journal of Chemical Information and Modeling. PMID 27662181 DOI: 10.1021/Acs.Jcim.6B00261 |
0.388 |
|
| 2016 |
Swift RV, Jusoh SA, Offutt TL, Li ES, Amaro RE. Knowledge-Based Methods to Train and Optimize Virtual Screening Ensembles. Journal of Chemical Information and Modeling. PMID 27097522 DOI: 10.1021/Acs.Jcim.5B00684 |
0.357 |
|
| 2016 |
Lee CT, Comer J, Herndon C, Leung N, Pavlova A, Swift RV, Tung C, Rowley C, Amaro RE, Chipot C, Wang Y, Gumbart JC. Simulation-based approaches for determining membrane permeability of small compounds. Journal of Chemical Information and Modeling. PMID 27043429 DOI: 10.1021/Acs.Jcim.6B00022 |
0.311 |
|
| 2015 |
Sørensen J, Demir Ö, Swift RV, Feher VA, Amaro RE. Molecular docking to flexible targets. Methods in Molecular Biology (Clifton, N.J.). 1215: 445-69. PMID 25330975 DOI: 10.1007/978-1-4939-1465-4_20 |
0.343 |
|
| 2014 |
Chen E, Swift RV, Alderson N, Feher VA, Feng GS, Amaro RE. Computation-guided discovery of influenza endonuclease inhibitors. Acs Medicinal Chemistry Letters. 5: 61-64. PMID 24490002 DOI: 10.1021/Ml4003474 |
0.311 |
|
| 2013 |
Swift RV, Amaro RE. Back to the future: can physical models of passive membrane permeability help reduce drug candidate attrition and move us beyond QSPR? Chemical Biology & Drug Design. 81: 61-71. PMID 23066853 DOI: 10.1111/Cbdd.12074 |
0.32 |
|
| 2012 |
Swift RV, Ong CD, Amaro RE. Magnesium-induced nucleophile activation in the guanylyltransferase mRNA capping enzyme. Biochemistry. 51: 10236-43. PMID 23205906 DOI: 10.1021/Bi301224B |
0.311 |
|
| 2012 |
Nichols SE, Swift RV, Amaro RE. Rational prediction with molecular dynamics for hit identification. Current Topics in Medicinal Chemistry. 12: 2002-12. PMID 23110535 DOI: 10.2174/156802612804910313 |
0.373 |
|
| 2012 |
Votapka L, Demir O, Swift RV, Walker RC, Amaro RE. Variable ligand- and receptor-binding hot spots in key strains of influenza neuraminidase. Journal of Molecular and Genetic Medicine : An International Journal of Biomedical Research. 6: 293-300. PMID 22872804 DOI: 10.4172/1747-0862.1000052 |
0.343 |
|
| 2011 |
Swift RV, Amaro RE. Modeling the pharmacodynamics of passive membrane permeability. Journal of Computer-Aided Molecular Design. 25: 1007-17. PMID 22042376 DOI: 10.1007/S10822-011-9480-7 |
0.313 |
|
| 2011 |
Torres R, Swift RV, Chim N, Wheatley N, Lan B, Atwood BR, Pujol C, Sankaran B, Bliska JB, Amaro RE, Goulding CW. Biochemical, structural and molecular dynamics analyses of the potential virulence factor RipA from Yersinia pestis. Plos One. 6: e25084. PMID 21966419 DOI: 10.1371/Journal.Pone.0025084 |
0.345 |
|
| 2011 |
Amaro RE, Swift RV, Votapka L, Li WW, Walker RC, Bush RM. Mechanism of 150-cavity formation in influenza neuraminidase. Nature Communications. 2: 388. PMID 21750542 DOI: 10.1038/Ncomms1390 |
0.31 |
|
| 2010 |
Durrant JD, Hall L, Swift RV, Landon M, Schnaufer A, Amaro RE. Novel naphthalene-based inhibitors of Trypanosoma brucei RNA editing ligase 1. Plos Neglected Tropical Diseases. 4: e803. PMID 20808768 DOI: 10.1371/Journal.Pntd.0000803 |
0.375 |
|
| 2009 |
Fajer M, Swift RV, McCammon JA. Using multistate free energy techniques to improve the efficiency of replica exchange accelerated molecular dynamics. Journal of Computational Chemistry. 30: 1719-25. PMID 19421994 DOI: 10.1002/Jcc.21285 |
0.322 |
|
| 2009 |
Swift RV, McCammon JA. Substrate induced population shifts and stochastic gating in the PBCV-1 mRNA capping enzyme. Journal of the American Chemical Society. 131: 5126-33. PMID 19301911 DOI: 10.1021/Ja808064G |
0.352 |
|
| 2008 |
Swift RV, McCammon JA. Catalytically requisite conformational dynamics in the mRNA-capping enzyme probed by targeted molecular dynamics. Biochemistry. 47: 4102-11. PMID 18330997 DOI: 10.1021/Bi8000209 |
0.339 |
|
| 2007 |
Amaro RE, Swift RV, McCammon JA. Functional and structural insights revealed by molecular dynamics simulations of an essential RNA editing ligase in Trypanosoma brucei. Plos Neglected Tropical Diseases. 1: e68. PMID 18060084 DOI: 10.1371/Journal.Pntd.0000068 |
0.425 |
|
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