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Brock A. Peters, Ph.D. - Publications

Affiliations: 
2005 Johns Hopkins University, Baltimore, MD 
Area:
Molecular Biology
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38 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Cai Y, Anderson E, Xue W, Wong S, Cui L, Cheng X, Wang O, Mao Q, Liu SJ, Davis JT, Magalang PR, Schmidt D, Kasuga T, Garbelotto M, Drmanac R, ... ... Peters BA, et al. Assembly and analysis of the genome of Notholithocarpus densiflorus. G3 (Bethesda, Md.). PMID 38427916 DOI: 10.1093/g3journal/jkae043  0.343
2022 McElwain MA, Peters BA. Accurate Sequencing and Haplotyping from 10 Cells Using Long Fragment Read (LFR) Technology. Methods in Molecular Biology (Clifton, N.J.). 2590: 71-84. PMID 36335493 DOI: 10.1007/978-1-0716-2819-5_5  0.314
2020 Xu M, Guo L, Gu S, Wang O, Zhang R, Peters BA, Fan G, Liu X, Xu X, Deng L, Zhang Y. TGS-GapCloser: A fast and accurate gap closer for large genomes with low coverage of error-prone long reads. Gigascience. 9. PMID 32893860 DOI: 10.1093/Gigascience/Giaa094  0.42
2020 Weng J, Chen T, Xie Y, Xu X, Zhang G, Peters BA, Drmanac R. IterCluster: a barcode clustering algorithm for long fragment read analysis. Peerj. 8: e8431. PMID 32231869 DOI: 10.7717/Peerj.8431  0.406
2019 Liu C, Wang M, Wei X, Wu L, Xu J, Dai X, Xia J, Cheng M, Yuan Y, Zhang P, Li J, Feng T, Chen A, Zhang W, Chen F, ... ... Peters BA, et al. An ATAC-seq atlas of chromatin accessibility in mouse tissues. Scientific Data. 6: 65. PMID 31110271 DOI: 10.1038/S41597-019-0071-0  0.332
2019 Wang O, Chin R, Cheng X, Wu M, Mao Q, Tang J, Sun Y, Anderson E, Lam H, Chen D, Zhou Y, Wang L, Fan F, Zou Y, Xie Y, ... ... Peters B, et al. Efficient and unique co-barcoding of second-generation sequencing reads from long DNA molecules enabling cost effective and accurate sequencing, haplotyping, and de novo assembly. Genome Research. PMID 30940689 DOI: 10.1101/Gr.245126.118  0.409
2019 Hoehe MR, Herwig R, Mao Q, Peters BA, Drmanac R, Church GM, Huebsch T. Significant abundance of cis configurations of coding variants in diploid human genomes. Nucleic Acids Research. PMID 30698752 DOI: 10.1093/Nar/Gkz031  0.391
2018 Walker RF, Ciotlos S, Mao Q, Chin R, Drmanac S, Barua N, Agarwal MR, Zhang RY, Li Z, Wu MKY, Sun K, Lee K, Nguyen S, Liu JS, Carnevali P, ... ... Peters BA, et al. Clinical and genetic analysis of a rare syndrome associated with neoteny. Genetics in Medicine : Official Journal of the American College of Medical Genetics. 20: 495-502. PMID 29758565 DOI: 10.1038/Gim.2017.140  0.391
2018 Mao Q, Chin R, Xie W, Deng Y, Zhang W, Xu H, Yu Zhang R, Shi Q, Peters EE, Gulbahce N, Li Z, Chen F, Drmanac R, Peters BA. Advanced Whole-Genome Sequencing and Analysis of Fetal Genomes from Amniotic Fluid. Clinical Chemistry. PMID 29545257 DOI: 10.1373/Clinchem.2017.281220  0.425
2017 Mitropoulos K, Merkouri Papadima E, Xiromerisiou G, Balasopoulou A, Charalampidou K, Galani V, Zafeiri KV, Dardiotis E, Ralli S, Deretzi G, John A, Kydonopoulou K, Papadopoulou E, di Pardo A, Akcimen F, ... ... Peters BA, et al. Genomic variants in the FTO gene are associated with sporadic amyotrophic lateral sclerosis in Greek patients. Human Genomics. 11: 30. PMID 29216901 DOI: 10.1186/S40246-017-0126-2  0.318
2017 Gulbahce N, Magbanua MJM, Chin R, Agarwal MR, Luo X, Liu J, Hayden DM, Mao Q, Ciotlos S, Li Z, Chen Y, Chen X, Li Y, Zhang RY, Lee K, ... ... Peters BA, et al. Quantitative Whole Genome Sequencing of Circulating Tumor Cells Enables Personalized Combination Therapy of Metastatic Cancer. Cancer Research. 77: 4530-4541. PMID 28811315 DOI: 10.1158/0008-5472.Can-17-0688  0.486
2017 McElwain MA, Zhang RY, Drmanac R, Peters BA. Long Fragment Read (LFR) Technology: Cost-Effective, High-Quality Genome-Wide Molecular Haplotyping. Methods in Molecular Biology (Clifton, N.J.). 1551: 191-205. PMID 28138848 DOI: 10.1007/978-1-4939-6750-6_11  0.413
2016 Mao Q, Ciotlos S, Zhang RY, Ball MP, Chin R, Carnevali P, Barua N, Nguyen S, Agarwal MR, Clegg T, Connelly A, Vandewege W, Zaranek AW, Estep PW, Church GM, ... ... Peters BA, et al. The whole genome sequences and experimentally phased haplotypes of over 100 personal genomes. Gigascience. 5: 42. PMID 27724973 DOI: 10.1186/S13742-016-0148-Z  0.453
2016 Hellner K, Miranda F, Fotso Chedom D, Herrero-Gonzalez S, Hayden DM, Tearle R, Artibani M, KaramiNejadRanjbar M, Williams R, Gaitskell K, Elorbany S, Xu R, Laios A, Buiga P, Ahmed K, ... ... Peters BA, et al. Premalignant SOX2 overexpression in the fallopian tubes of ovarian cancer patients: Discovery and validation studies. Ebiomedicine. PMID 27492892 DOI: 10.1016/J.Ebiom.2016.06.048  0.416
2016 Ciotlos S, Mao Q, Zhang RY, Li Z, Chin R, Gulbahce N, Liu SJ, Drmanac R, Peters BA. Whole genome sequence analysis of BT-474 using complete Genomics' standard and long fragment read technologies. Gigascience. 5: 8. PMID 26865974 DOI: 10.1186/S13742-016-0113-X  0.444
2015 Karageorgos I, Mizzi C, Giannopoulou E, Pavlidis C, Peters BA, Zagoriti Z, Stenson PD, Mitropoulos K, Borg J, Kalofonos HP, Drmanac R, Stubbs A, van der Spek P, Cooper DN, Katsila T, et al. Identification of cancer predisposition variants in apparently healthy individuals using a next-generation sequencing-based family genomics approach. Human Genomics. 9: 12. PMID 26092435 DOI: 10.1186/S40246-015-0034-2  0.434
2015 Peters BA, Kermani BG, Alferov O, Agarwal MR, McElwain MA, Gulbahce N, Hayden DM, Tang YT, Zhang RY, Tearle R, Crain B, Prates R, Berkeley A, Munné S, Drmanac R. Detection and phasing of single base de novo mutations in biopsies from human in vitro fertilized embryos by advanced whole-genome sequencing. Genome Research. 25: 426-34. PMID 25672852 DOI: 10.1101/Gr.181255.114  0.399
2015 Drmanac R, Peters BA, Church GM, Reid CA, Xu X. Accurate whole genome sequencing as the ultimate genetic test. Clinical Chemistry. 61: 305-6. PMID 25479756 DOI: 10.1373/Clinchem.2014.224907  0.437
2014 Peters BA, Liu J, Drmanac R. Co-barcoded sequence reads from long DNA fragments: a cost-effective solution for "perfect genome" sequencing. Frontiers in Genetics. 5: 466. PMID 25642240 DOI: 10.3389/Fgene.2014.00466  0.449
2014 Mizzi C, Peters B, Mitropoulou C, Mitropoulos K, Katsila T, Agarwal MR, van Schaik RH, Drmanac R, Borg J, Patrinos GP. Personalized pharmacogenomics profiling using whole-genome sequencing. Pharmacogenomics. 15: 1223-34. PMID 25141897 DOI: 10.2217/Pgs.14.102  0.392
2013 Schaaf CP, Gonzalez-Garay ML, Xia F, Potocki L, Gripp KW, Zhang B, Peters BA, McElwain MA, Drmanac R, Beaudet AL, Caskey CT, Yang Y. Truncating mutations of MAGEL2 cause Prader-Willi phenotypes and autism. Nature Genetics. 45: 1405-8. PMID 24076603 DOI: 10.1038/Ng.2776  0.366
2013 Jaiswal BS, Kljavin NM, Stawiski EW, Chan E, Parikh C, Durinck S, Chaudhuri S, Pujara K, Guillory J, Edgar KA, Janakiraman V, Scholz RP, Bowman KK, Lorenzo M, Li H, ... ... Peters BA, et al. Oncogenic ERBB3 mutations in human cancers. Cancer Cell. 23: 603-17. PMID 23680147 DOI: 10.1016/J.Ccr.2013.04.012  0.327
2012 Ball MP, Thakuria JV, Zaranek AW, Clegg T, Rosenbaum AM, Wu X, Angrist M, Bhak J, Bobe J, Callow MJ, Cano C, Chou MF, Chung WK, Douglas SM, Estep PW, ... ... Peters BA, et al. A public resource facilitating clinical use of genomes. Proceedings of the National Academy of Sciences of the United States of America. 109: 11920-7. PMID 22797899 DOI: 10.1073/Pnas.1201904109  0.412
2012 Peters BA, Kermani BG, Sparks AB, Alferov O, Hong P, Alexeev A, Jiang Y, Dahl F, Tang YT, Haas J, Robasky K, Zaranek AW, Lee JH, Ball MP, Peterson JE, et al. Accurate whole-genome sequencing and haplotyping from 10 to 20 human cells. Nature. 487: 190-5. PMID 22785314 DOI: 10.1038/Nature11236  0.464
2011 Nacu S, Yuan W, Kan Z, Bhatt D, Rivers CS, Stinson J, Peters BA, Modrusan Z, Jung K, Seshagiri S, Wu TD. Deep RNA sequencing analysis of readthrough gene fusions in human prostate adenocarcinoma and reference samples. Bmc Medical Genomics. 4: 11. PMID 21261984 DOI: 10.1186/1755-8794-4-11  0.42
2010 Kan Z, Jaiswal BS, Stinson J, Janakiraman V, Bhatt D, Stern HM, Yue P, Haverty PM, Bourgon R, Zheng J, Moorhead M, Chaudhuri S, Tomsho LP, Peters BA, Pujara K, et al. Diverse somatic mutation patterns and pathway alterations in human cancers. Nature. 466: 869-73. PMID 20668451 DOI: 10.1038/Nature09208  0.387
2010 Drmanac R, Sparks AB, Callow MJ, Halpern AL, Burns NL, Kermani BG, Carnevali P, Nazarenko I, Nilsen GB, Yeung G, Dahl F, Fernandez A, Staker B, Pant KP, Baccash J, ... ... Peters BA, et al. Human genome sequencing using unchained base reads on self-assembling DNA nanoarrays. Science (New York, N.Y.). 327: 78-81. PMID 19892942 DOI: 10.1126/Science.1181498  0.466
2009 Jaiswal BS, Janakiraman V, Kljavin NM, Chaudhuri S, Stern HM, Wang W, Kan Z, Dbouk HA, Peters BA, Waring P, Dela Vega T, Kenski DM, Bowman KK, Lorenzo M, Li H, et al. Somatic mutations in p85alpha promote tumorigenesis through class IA PI3K activation. Cancer Cell. 16: 463-74. PMID 19962665 DOI: 10.1016/J.Ccr.2009.10.016  0.301
2009 Hu X, Stern HM, Ge L, O'Brien C, Haydu L, Honchell CD, Haverty PM, Peters BA, Wu TD, Amler LC, Chant J, Stokoe D, Lackner MR, Cavet G. Genetic alterations and oncogenic pathways associated with breast cancer subtypes. Molecular Cancer Research : McR. 7: 511-22. PMID 19372580 DOI: 10.1158/1541-7786.Mcr-08-0107  0.366
2007 Peters BA, Kan Z, Sebisanovic D, Pujara K, Wang Z, Hong P, Chow B, Stinson J, Carlton VE, Pham TQ, Stern H, Waring P, Hillan KJ, Eberhard DA, de Sauvage F, et al. Highly efficient somatic-mutation identification using Escherichia coli mismatch-repair detection. Nature Methods. 4: 713-5. PMID 17704782 DOI: 10.1038/Nmeth1081  0.382
2007 Wen YH, Koeppen H, Garcia R, Chiriboga L, Tarlow BD, Peters BA, Eigenbrot C, Yee H, Steiner G, Greco MA. Epidermal growth factor receptor in osteosarcoma: expression and mutational analysis. Human Pathology. 38: 1184-91. PMID 17509661 DOI: 10.1016/J.Humpath.2007.01.002  0.304
2007 Peters BA, St Croix B, Sjöblom T, Cummins JM, Silliman N, Ptak J, Saha S, Kinzler KW, Hatzis C, Velculescu VE. Large-scale identification of novel transcripts in the human genome. Genome Research. 17: 287-92. PMID 17267814 DOI: 10.1101/Gr.5486607  0.641
2007 Kaminker JS, Zhang Y, Waugh A, Haverty PM, Peters B, Sebisanovic D, Stinson J, Forrest WF, Bazan JF, Seshagiri S, Zhang Z. Distinguishing cancer-associated missense mutations from common polymorphisms. Cancer Research. 67: 465-73. PMID 17234753 DOI: 10.1158/0008-5472.Can-06-1736  0.385
2005 Diaz LA, Cheong I, Foss CA, Zhang X, Peters BA, Agrawal N, Bettegowda C, Karim B, Liu G, Khan K, Huang X, Kohli M, Dang LH, Hwang P, Vogelstein A, et al. Pharmacologic and toxicologic evaluation of C. novyi-NT spores. Toxicological Sciences : An Official Journal of the Society of Toxicology. 88: 562-75. PMID 16162850 DOI: 10.1093/Toxsci/Kfi316  0.579
2005 Peters BA, Velculescu VE. Transcriptome PETs: a genome's best friends. Nature Methods. 2: 93-4. PMID 15782204 DOI: 10.1038/Nmeth0205-93  0.419
2005 Peters BA, Diaz LA, Polyak K, Meszler L, Romans K, Guinan EC, Antin JH, Myerson D, Hamilton SR, Vogelstein B, Kinzler KW, Lengauer C. Contribution of bone marrow-derived endothelial cells to human tumor vasculature Nature Medicine. 11: 261-262. PMID 15723071 DOI: 10.1038/Nm1200  0.458
2004 Bachman KE, Argani P, Samuels Y, Silliman N, Ptak J, Szabo S, Konishi H, Karakas B, Blair BG, Lin C, Peters BA, Velculescu VE, Park BH. The PIK3CA gene is mutated with high frequency in human breast cancers. Cancer Biology & Therapy. 3: 772-5. PMID 15254419 DOI: 10.4161/Cbt.3.8.994  0.328
2004 Wang Z, Shen D, Parsons DW, Bardelli A, Sager J, Szabo S, Ptak J, Silliman N, Peters BA, van der Heijden MS, Parmigiani G, Yan H, Wang TL, Riggins G, Powell SM, et al. Mutational analysis of the tyrosine phosphatome in colorectal cancers. Science (New York, N.Y.). 304: 1164-6. PMID 15155950 DOI: 10.1126/Science.1096096  0.499
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