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Jaclyn Taroni - Publications

Affiliations: 
2016- University of Pennsylvania Perelman School of Medicine 
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16 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Shapiro JA, Gaonkar KS, Spielman SJ, Savonen CL, Bethell CJ, Jin R, Rathi KS, Zhu Y, Egolf LE, Farrow BK, Miller DP, Yang Y, Koganti T, Noureen N, Koptyra MP, ... ... Taroni JN, et al. OpenPBTA: The Open Pediatric Brain Tumor Atlas. Cell Genomics. 3: 100340. PMID 37492101 DOI: 10.1016/j.xgen.2023.100340  0.61
2023 Banerjee J, Taroni JN, Allaway RJ, Prasad DV, Guinney J, Greene C. Machine learning in rare disease. Nature Methods. PMID 37248386 DOI: 10.1038/s41592-023-01886-z  0.507
2023 Dang MT, Gonzalez MV, Gaonkar KS, Rathi KS, Young P, Arif S, Zhai L, Alam Z, Devalaraja S, Jerrick To TK, Folkert IW, Raman P, Rokita JL, Martinez D, Taroni JN, et al. Macrophages in SHH subgroup medulloblastoma display dynamic heterogeneity that varies with treatment modality. Cell Reports. 42: 112600. PMID 37235472 DOI: 10.1016/j.celrep.2023.112600  0.423
2023 Foltz SM, Greene CS, Taroni JN. Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously. Communications Biology. 6: 222. PMID 36841852 DOI: 10.1038/s42003-023-04588-6  0.491
2022 Oh S, Geistlinger L, Ramos M, Blankenberg D, van den Beek M, Taroni JN, Carey VJ, Greene CS, Waldron L, Davis S. GenomicSuperSignature facilitates interpretation of RNA-seq experiments through robust, efficient comparison to public databases. Nature Communications. 13: 3695. PMID 35760813 DOI: 10.1038/s41467-022-31411-3  0.511
2022 Fungtammasan A, Lee A, Taroni J, Wheeler K, Chin CS, Davis S, Greene C. Ten simple rules for large-scale data processing. Plos Computational Biology. 18: e1009757. PMID 35143491 DOI: 10.1371/journal.pcbi.1009757  0.556
2021 Dang MT, Gonzalez MV, Gaonkar KS, Rathi KS, Young P, Arif S, Zhai L, Alam Z, Devalaraja S, To TKJ, Folkert IW, Raman P, Rokita JL, Martinez D, Taroni JN, et al. Macrophages in SHH subgroup medulloblastoma display dynamic heterogeneity that varies with treatment modality. Cell Reports. 34: 108917. PMID 33789113 DOI: 10.1016/j.celrep.2021.108917  0.505
2020 Banerjee J, Allaway RJ, Taroni JN, Baker A, Zhang X, Moon CI, Pratilas CA, Blakeley JO, Guinney J, Hirbe A, Greene CS, Gosline SJ. Integrative Analysis Identifies Candidate Tumor Microenvironment and Intracellular Signaling Pathways that Define Tumor Heterogeneity in NF1. Genes. 11. PMID 32098059 DOI: 10.3390/Genes11020226  0.514
2019 Taroni JN, Grayson PC, Hu Q, Eddy S, Kretzler M, Merkel PA, Greene CS. MultiPLIER: A Transfer Learning Framework for Transcriptomics Reveals Systemic Features of Rare Disease. Cell Systems. 8: 380-394.e4. PMID 31121115 DOI: 10.1016/J.Cels.2019.04.003  0.521
2019 Gonzalez-Hernandez G, Lu Z, Leaman R, Weissenbacher D, Boland MR, Chen Y, Du J, Fluck J, Greene CS, Holmes J, Kashyap A, Nielsen RL, Ouyang Z, Schaaf S, Taroni JN, et al. PSB 2019 Workshop on Text Mining and Visualization for Precision Medicine. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 24: 449-454. PMID 30864346  0.48
2018 Grayson PC, Eddy S, Taroni JN, Lightfoot YL, Mariani L, Parikh H, Lindenmeyer MT, Ju W, Greene CS, Godfrey B, Cohen CD, Krischer J, Kretzler M, Merkel PA. Metabolic pathways and immunometabolism in rare kidney diseases. Annals of the Rheumatic Diseases. PMID 29724730 DOI: 10.1136/Annrheumdis-2017-212935  0.456
2018 Dahlstrom KM, Collins AJ, Doing G, Taroni JN, Gauvin TJ, Greene CS, Hogan DA, O'Toole GA. A Multimodal Strategy Used By A Large c-di-GMP Network. Journal of Bacteriology. PMID 29311282 DOI: 10.1128/Jb.00703-17  0.458
2017 Taroni JN, Greene CS, Martyanov V, Wood TA, Christmann RB, Farber HW, Lafyatis RA, Denton CP, Hinchcliff ME, Pioli PA, Mahoney JM, Whitfield ML. A novel multi-network approach reveals tissue-specific cellular modulators of fibrosis in systemic sclerosis. Genome Medicine. 9: 27. PMID 28330499 DOI: 10.1186/S13073-017-0417-1  0.475
2016 Sargent JL, Li Z, Aliprantis AO, Greenblatt M, Lemaire R, Wu MH, Wei J, Taroni J, Harris A, Long KB, Burgwin C, Artlett CM, Blankenhorn EP, Lafyatis R, Varga J, et al. Interspecies comparative genomics identifies optimal mouse models of systemic sclerosis. Arthritis & Rheumatology (Hoboken, N.J.). PMID 26945694 DOI: 10.1002/Art.39658  0.302
2015 Johnson ME, Mahoney JM, Taroni J, Sargent JL, Marmarelis E, Wu MR, Varga J, Hinchcliff ME, Whitfield ML. Experimentally-derived fibroblast gene signatures identify molecular pathways associated with distinct subsets of systemic sclerosis patients in three independent cohorts. Plos One. 10: e0114017. PMID 25607805 DOI: 10.1371/Journal.Pone.0114017  0.351
2015 Mahoney JM, Taroni J, Martyanov V, Wood TA, Greene CS, Pioli PA, Hinchcliff ME, Whitfield ML. Systems level analysis of systemic sclerosis shows a network of immune and profibrotic pathways connected with genetic polymorphisms. Plos Computational Biology. 11: e1004005. PMID 25569146 DOI: 10.1371/Journal.Pcbi.1004005  0.488
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