Feng Wang - Publications

Affiliations: 
Biology Indiana University, Bloomington, Bloomington, IN, United States 

50 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Chen X, Yang H, Wang L, Chen Y, Yang Y, Chen H, Wang F, Zhang Y, Deng M. H3K4me3 Genome-Wide Distribution and Transcriptional Regulation of Transposable Elements by RNA Pol2 Deposition. International Journal of Molecular Sciences. 25. PMID 39769308 DOI: 10.3390/ijms252413545  0.317
2024 Ament IH, DeBruyne N, Wang F, Lin L. Long-read RNA sequencing: a transformative technology for exploring transcriptome complexity in human diseases. Molecular Therapy : the Journal of the American Society of Gene Therapy. PMID 39563027 DOI: 10.1016/j.ymthe.2024.11.025  0.416
2024 Chen F, Zhang C, Xue J, Wang F, Li Z. Molecular mechanism for target RNA recognition and cleavage of Cas13h. Nucleic Acids Research. PMID 38661236 DOI: 10.1093/nar/gkae324  0.417
2024 Chen Z, Wang F, Chen B, Wu G, Tian D, Yuan Q, Qiu S, Zhai Y, Chen J, Zheng H, Yan F. Turnip mosaic virus NIb weakens the function of eukaryotic translation initiation factor 6 facilitating viral infection in Nicotiana benthamiana. Molecular Plant Pathology. 25: e13434. PMID 38388027 DOI: 10.1111/mpp.13434  0.33
2023 Qiu H, Li G, Yuan J, Yang D, Ma Y, Wang F, Dai Y, Chang X. Efficient exon skipping by base-editor-mediated abrogation of exonic splicing enhancers. Cell Reports. 42: 113340. PMID 37906593 DOI: 10.1016/j.celrep.2023.113340  0.315
2023 Wang F, Xu Y, Wang R, Zhang B, Smith N, Notaro A, Gaerlan S, Kutschera E, Kadash-Edmondson KE, Xing Y, Lin L. TEQUILA-seq: a versatile and low-cost method for targeted long-read RNA sequencing. Nature Communications. 14: 4760. PMID 37553321 DOI: 10.1038/s41467-023-40083-6  0.372
2023 Xu J, Qian B, Wang F, Huang Y, Yan X, Li P, Zhang Q, Li Y, Sun K. Global Profile of tRNA-Derived Small RNAs in Pathological Cardiac Hypertrophy Plasma and Identification of tRF-21-NB8PLML3E as a New Hypertrophy Marker. Diagnostics (Basel, Switzerland). 13. PMID 37370960 DOI: 10.3390/diagnostics13122065  0.332
2023 Lu Q, Chen T, Wang J, Wang F, Ye W, Ma L, Wu S. Structural Insight into the Mechanism of σ32-Mediated Transcription Initiation of Bacterial RNA Polymerase. Biomolecules. 13. PMID 37238608 DOI: 10.3390/biom13050738  0.31
2023 Dong P, Taheri M, Wang F. Editorial: Interplay between RNA-binding proteins and non-coding RNAs in tumor therapeutic resistance. Frontiers in Oncology. 13: 1201122. PMID 37152004 DOI: 10.3389/fonc.2023.1201122  0.339
2023 Liao X, Ruan X, Chen X, Zheng B, Wu X, Deng Z, Yang Z, Wang F, Qin S, Jiang H. The Long Noncoding RNA Gm9866/Nuclear Factor-B Axis Promotes Macrophage Polarization. Mediators of Inflammation. 2023: 9991916. PMID 36756088 DOI: 10.1155/2023/9991916  0.342
2023 Wang F, Huang HY, Huang J, Singh J, Pikaard CS. Enzymatic reactions of AGO4 in RNA-directed DNA methylation: siRNA duplex loading, passenger strand elimination, target RNA slicing, and sliced target retention. Genes & Development. PMID 36746605 DOI: 10.1101/gad.350240.122  0.82
2023 Gao Y, Wang F, Wang R, Kutschera E, Xu Y, Xie S, Wang Y, Kadash-Edmondson KE, Lin L, Xing Y. ESPRESSO: Robust discovery and quantification of transcript isoforms from error-prone long-read RNA-seq data. Science Advances. 9: eabq5072. PMID 36662851 DOI: 10.1126/sciadv.abq5072  0.376
2022 Wang F, Calvo-Roitberg E, Rembetsy-Brown JM, Fang M, Sousa J, Kartje ZJ, Krishnamurthy PM, Lee J, Green MR, Pai AA, Watts JK. G-rich motifs within phosphorothioate-based antisense oligonucleotides (ASOs) drive activation of FXN expression through indirect effects. Nucleic Acids Research. PMID 36511872 DOI: 10.1093/nar/gkac1108  0.347
2022 Li W, Wang YY, Xiao L, Ding J, Wang L, Wang F, Sun T. Mysterious long noncoding RNAs and their relationships to human disease. Frontiers in Molecular Biosciences. 9: 950408. PMID 36406273 DOI: 10.3389/fmolb.2022.950408  0.316
2022 Song P, Li Y, Wang F, Pu L, Bao L, Gao H, Zhu C, Wang M, Tao L. Genome-wide screening for differentially methylated long noncoding RNAs identifies LIFR-AS1 as an epigenetically regulated lncRNA that inhibits the progression of colorectal cancer. Clinical Epigenetics. 14: 138. PMID 36316703 DOI: 10.1186/s13148-022-01361-0  0.319
2022 Li G, Zhu Y, Gu J, Zhang T, Wang F, Huang K, Gu C, Xu K, Zhan R, Shen J. RNA modification patterns based on major RNA modifications define tumor microenvironment characteristics in glioblastoma. Scientific Reports. 12: 10278. PMID 35717510 DOI: 10.1038/s41598-022-14539-6  0.343
2022 Wan Z, Yang H, Cai Y, Ma J, Cheng P, Wang Z, Wang F, Zhang Y. Comparative Transcriptomic Analysis of Hu Sheep Pituitary Gland Prolificacy at the Follicular and Luteal Phases. Genes. 13. PMID 35327994 DOI: 10.3390/genes13030440  0.305
2022 Loffer A, Singh J, Fukudome A, Mishra V, Wang F, Pikaard CS. A DCL3 dicing code within Pol IV-RDR2 transcripts diversifies the siRNA pool guiding RNA-directed DNA methylation. Elife. 11. PMID 35098919 DOI: 10.7554/eLife.73260  0.651
2021 McKinlay A, Fultz D, Wang F, Pikaard CS. Targeted Enrichment of rRNA Gene Tandem Arrays for Ultra-Long Sequencing by Selective Restriction Endonuclease Digestion. Frontiers in Plant Science. 12: 656049. PMID 33995452 DOI: 10.3389/fpls.2021.656049  0.742
2021 Bai XF, Niu RZ, Liu J, Pan XD, Wang F, Yang W, Wang LQ, Sun LZ. Roles of noncoding RNAs in the initiation and progression of myocardial ischemia reperfusion injury. Epigenomics. PMID 33858189 DOI: 10.2217/epi-2020-0359  0.301
2021 Mishra V, Singh J, Wang F, Zhang Y, Fukudome A, Trinidad JC, Takagi Y, Pikaard CS. Assembly of a dsRNA synthesizing complex: RNA-DEPENDENT RNA POLYMERASE 2 contacts the largest subunit of NUCLEAR RNA POLYMERASE IV. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33753485 DOI: 10.1073/pnas.2019276118  0.789
2021 Zhao H, Xu Y, Xie Y, Zhang L, Gao M, Li S, Wang F. m6A Regulators Is Differently Expressed and Correlated With Immune Response of Esophageal Cancer. Frontiers in Cell and Developmental Biology. 9: 650023. PMID 33748145 DOI: 10.3389/fcell.2021.650023  0.315
2021 Zhou Y, Yang Q, Wang F, Zhou Z, Xu J, Cheng S, Cheng Y. Self-Assembled DNA Nanostructure as a Carrier for Targeted siRNA Delivery in Glioma Cells. International Journal of Nanomedicine. 16: 1805-1817. PMID 33692623 DOI: 10.2147/IJN.S295598  0.409
2020 Gordon DE, Hiatt J, Bouhaddou M, Rezelj VV, Ulferts S, Braberg H, Jureka AS, Obernier K, Guo JZ, Batra J, Kaake RM, Weckstein AR, Owens TW, Gupta M, Pourmal S, ... ... Wang F, et al. Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms. Science (New York, N.Y.). PMID 33060197 DOI: 10.1126/science.abe9403  0.47
2020 Ren C, Deng K, Wang Z, Deng M, Fan Y, Zhang Y, Ma J, Wang S, Liu Z, Wang F. Reinterpreting sheep muscle strand-specific RNA sequencing data showing extensive 3'UTR extensions. Animal Genetics. PMID 32696483 DOI: 10.1111/age.12987  0.35
2020 Wang F, Zuroske T, Watts JK. RNA therapeutics on the rise. Nature Reviews. Drug Discovery. PMID 32341501 DOI: 10.1038/d41573-020-00078-0  0.405
2019 Liu W, Li Y, Zhang Y, Shen X, Su Z, Chen L, Cai W, Wang F, Ju S. Circulatinglong non-coding RNA FEZF1-AS1 and AFAP1-AS1 serve as potential diagnostic biomarkers for gastric cancer. Pathology, Research and Practice. 152757. PMID 31785996 DOI: 10.1016/j.prp.2019.152757  0.3
2019 Singh J, Mishra V, Wang F, Huang HY, Pikaard CS. Reaction Mechanisms of Pol IV, RDR2, and DCL3 Drive RNA Channeling in the siRNA-Directed DNA Methylation Pathway. Molecular Cell. 75: 576-589.e5. PMID 31398324 DOI: 10.1016/J.Molcel.2019.07.008  0.815
2019 Chen L, Wang F, Bruggeman EC, Li C, Yao B. circMeta: a unified computational framework for genomic feature annotation and differential expression analysis of circular RNAs. Bioinformatics (Oxford, England). PMID 31373611 DOI: 10.1093/Bioinformatics/Btz606  0.368
2019 Kong Y, Lu Z, Liu P, Liu Y, Wang F, Liang EY, Hou FF, Liang M. Long Noncoding RNA: Genomics and Relevance to Physiology. Comprehensive Physiology. 9: 933-946. PMID 31187897 DOI: 10.1002/Cphy.C180032  0.322
2019 Zheng J, Wang Z, Yang H, Yao X, Yang P, Ren C, Wang F, Zhang Y. Pituitary Transcriptomic Study Reveals the Differential Regulation of lncRNAs and mRNAs Related to Prolificacy in Different FecB Genotyping Sheep. Genes. 10. PMID 30781725 DOI: 10.3390/genes10020157  0.312
2018 Wang YF, Li BW, Sun S, Li X, Su W, Wang ZH, Wang F, Zhang W, Yang HY. Circular RNA Expression in Oral Squamous Cell Carcinoma. Frontiers in Oncology. 8: 398. PMID 30349810 DOI: 10.3389/fonc.2018.00398  0.327
2018 Sun S, Li B, Wang Y, Li X, Wang P, Wang F, Zhang W, Yang H. Clinical Significance of the Decreased Expression of hsa_circ_001242 in Oral Squamous Cell Carcinoma. Disease Markers. 2018: 6514795. PMID 30069275 DOI: 10.1155/2018/6514795  0.308
2018 Deng M, Wan Y, Liu Z, Ren C, Zhang G, Pang J, Zhang Y, Wang F. Long noncoding RNAs exchange during zygotic genome activation in goat. Biology of Reproduction. PMID 29771291 DOI: 10.1093/biolre/ioy118  0.325
2018 Shahid S, Kim G, Johnson NR, Wafula E, Wang F, Coruh C, Bernal-Galeano V, Phifer T, dePamphilis CW, Westwood JH, Axtell MJ. MicroRNAs from the parasitic plant Cuscuta campestris target host messenger RNAs. Nature. 553: 82-85. PMID 29300014 DOI: 10.1038/Nature25027  0.75
2017 Wang J, Blevins T, Podicheti R, Haag JR, Tan EH, Wang F, Pikaard CS. Mutation of Arabidopsis SMC4 identifies condensin as a corepressor of pericentromeric transposons and conditionally expressed genes. Genes & Development. PMID 28882854 DOI: 10.1101/Gad.301499.117  0.743
2016 Wang F, Axtell MJ. AGO4 is specifically required for heterochromatic siRNA accumulation at Pol V-dependent loci in Arabidopsis thaliana. The Plant Journal : For Cell and Molecular Biology. PMID 28002617 DOI: 10.1111/Tpj.13463  0.766
2016 Zhu P, Wang Y, Qin N, Wang F, Wang J, Deng XW, Zhu D. Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis. Proceedings of the National Academy of Sciences of the United States of America. PMID 27708161 DOI: 10.1073/pnas.1614852113  0.352
2016 Lin B, Wang F, Wang J, Xu C, Zhao H, Cheng Z, Feng D. The protective role of p72 in doxorubicin‑induced cardiomyocytes injury in vitro. Molecular Medicine Reports. PMID 27510756 DOI: 10.3892/mmr.2016.5600  0.443
2016 Xu X, Tao Y, Gao X, Zhang L, Li X, Zou W, Ruan K, Wang F, Xu GL, Hu R. A CRISPR-based approach for targeted DNA demethylation. Cell Discovery. 2: 16009. PMID 27462456 DOI: 10.1038/celldisc.2016.9  0.338
2016 Wang F, Johnson NR, Coruh C, Axtell MJ. Genome-wide analysis of single non-templated nucleotides in plant endogenous siRNAs and miRNAs. Nucleic Acids Research. PMID 27207877 DOI: 10.1093/Nar/Gkw457  0.817
2015 Wang F, Polydore S, Axtell MJ. More than meets the eye? Factors that affect target selection by plant miRNAs and heterochromatic siRNAs. Current Opinion in Plant Biology. 27: 118-124. PMID 26246393 DOI: 10.1016/J.Pbi.2015.06.012  0.762
2015 Huang PJ, Wang F, Liu J. Cleavable Molecular Beacon for Hg(2+) Detection Based on Phosphorothioate RNA Modifications. Analytical Chemistry. 87: 6890-5. PMID 26060876 DOI: 10.1021/Acs.Analchem.5B01362  0.319
2014 Li MY, Wang F, Xu ZS, Jiang Q, Ma J, Tan GF, Xiong AS. High throughput sequencing of two celery varieties small RNAs identifies microRNAs involved in temperature stress response. Bmc Genomics. 15: 242. PMID 24673837 DOI: 10.1186/1471-2164-15-242  0.302
2014 Liu Q, Wang F, Axtell MJ. Analysis of complementarity requirements for plant microRNA targeting using a Nicotiana benthamiana quantitative transient assay. The Plant Cell. 26: 741-53. PMID 24510721 DOI: 10.1105/Tpc.113.120972  0.758
2014 Liu Y, Lu N, Yuan B, Weng L, Wang F, Liu YJ, Zhang Z. The interaction between the helicase DHX33 and IPS-1 as a novel pathway to sense double-stranded RNA and RNA viruses in myeloid dendritic cells. Cellular & Molecular Immunology. 11: 49-57. PMID 24037184 DOI: 10.1038/cmi.2013.40  0.36
2013 Wang F, Redding S, Finkelstein IJ, Gorman J, Reichman DR, Greene EC. The promoter-search mechanism of Escherichia coli RNA polymerase is dominated by three-dimensional diffusion. Nature Structural & Molecular Biology. 20: 174-81. PMID 23262491 DOI: 10.1038/Nsmb.2472  0.342
2012 Wan LC, Wang F, Guo X, Lu S, Qiu Z, Zhao Y, Zhang H, Lin J. Identification and characterization of small non-coding RNAs from Chinese fir by high throughput sequencing. Bmc Plant Biology. 12: 146. PMID 22894611 DOI: 10.1186/1471-2229-12-146  0.39
2011 Tian L, He S, Li X, Hu WY, Peng PL, Wang F, Gao CY, Ren H, Tang KF. [Long-fragment RNA inhibits hepatitis B virus gene replication and expression in HepG2.2.15 cells]. Zhonghua Gan Zang Bing Za Zhi = Zhonghua Ganzangbing Zazhi = Chinese Journal of Hepatology. 19: 44-7. PMID 21272458 DOI: 10.3760/cma.j.issn.1007-3418.2011.01.012  0.327
2004 Tian MM, Wang F, Niu JQ, Wang MX. [Study on the cleavage activity of U1 small nuclear RNA chimeric ribozyme against HCV RNA in vitro]. Zhonghua Gan Zang Bing Za Zhi = Zhonghua Ganzangbing Zazhi = Chinese Journal of Hepatology. 12: 749-51. PMID 15619345  0.312
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