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Patrick J. Brown - Publications

Affiliations: 
Plant Biology University of California, Davis, Davis, CA 
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59 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Groh JS, Vik DC, Stevens KA, Brown PJ, Langley CH, Coop G. Distinct ancient structural polymorphisms control heterodichogamy in walnuts and hickories. Biorxiv : the Preprint Server For Biology. PMID 38187547 DOI: 10.1101/2023.12.23.573205  0.357
2022 Arab MM, Brown PJ, Abdollahi-Arpanahi R, Sohrabi SS, Askari H, Aliniaeifard S, Mokhtassi-Bidgoli A, Mesgaran MB, Leslie CA, Marrano A, Neale DB, Vahdati K. Genome-wide association analysis and pathway enrichment provide insights into the genetic basis of photosynthetic responses to drought stress in Persian walnut. Horticulture Research. 9: uhac124. PMID 35928405 DOI: 10.1093/hr/uhac124  0.345
2021 Ferguson JN, Fernandes SB, Monier B, Miller ND, Allen D, Dmitrieva A, Schmuker P, Lozano R, Valluru R, Buckler ES, Gore MA, Brown PJ, Spalding EP, Leakey ADB. Machine learning-enabled phenotyping for GWAS and TWAS of WUE traits in 869 field-grown sorghum accessions. Plant Physiology. PMID 34618065 DOI: 10.1093/plphys/kiab346  0.409
2021 Guo J, Brown PJ, Rayburn AL, Butts-Wilmsmeyer CJ, Boe A, Lee D. Genomic Variation Shaped by Environmental and Geographical Factors in Prairie Cordgrass Natural Populations Collected across Its Native Range in the USA. Genes. 12. PMID 34440416 DOI: 10.3390/genes12081240  0.359
2021 Ramasamy RK, Luo MC, Leslie CA, Velasco D, Ott N, McClean A, Dandekar AM, Aradhya M, Brown PJ, Browne GT, Kluepfel DA, Westphal A, Dvorak J. Co-located quantitative trait loci mediate resistance to Agrobacterium tumefaciens, Phytophthora cinnamomi, and P. pini in Juglans microcarpa × J. regia hybrids. Horticulture Research. 8: 111. PMID 33931626 DOI: 10.1038/s41438-021-00546-7  0.311
2021 Lozano R, Gazave E, Dos Santos JPR, Stetter MG, Valluru R, Bandillo N, Fernandes SB, Brown PJ, Shakoor N, Mockler TC, Cooper EA, Taylor Perkins M, Buckler ES, Ross-Ibarra J, Gore MA. Comparative evolutionary genetics of deleterious load in sorghum and maize. Nature Plants. 7: 17-24. PMID 33452486 DOI: 10.1038/s41477-020-00834-5  0.738
2020 Samira R, Kimball JA, Samayoa LF, Holland JB, Jamann TM, Brown PJ, Stacey G, Balint-Kurti PJ. Genome-wide association analysis of the strength of the MAMP-elicited defense response and resistance to target leaf spot in sorghum. Scientific Reports. 10: 20817. PMID 33257818 DOI: 10.1038/s41598-020-77684-w  0.339
2020 Sideli GM, McAtee P, Marrano A, Allen BJ, Brown PJ, Butterfield TS, Dandekar AM, Leslie CA, Neale DB. Genetic Analysis of Walnut ( L.) Pellicle Pigment Variation Through a Novel, High-Throughput Phenotyping Platform. G3 (Bethesda, Md.). PMID 33008832 DOI: 10.1534/g3.120.401580  0.456
2020 Sideli GM, Marrano A, Montanari S, Leslie CA, Allen BJ, Cheng H, Brown PJ, Neale DB. Quantitative phenotyping of shell suture strength in walnut (Juglans regia L.) enhances precision for detection of QTL and genome-wide association mapping. Plos One. 15: e0231144. PMID 32271818 DOI: 10.1371/Journal.Pone.0231144  0.437
2020 Bernard A, Marrano A, Donkpegan A, Brown PJ, Leslie CA, Neale DB, Lheureux F, Dirlewanger E. Association and linkage mapping to unravel genetic architecture of phenological traits and lateral bearing in Persian walnut (Juglans regia L.). Bmc Genomics. 21: 203. PMID 32131731 DOI: 10.1186/S12864-020-6616-Y  0.473
2019 Dos Santos JPR, Fernandes SB, Lozano R, Brown PJ, Buckler ES, Garcia AAF, Gore MA. Novel Bayesian Networks for Genomic Prediction of Developmental Traits in Biomass Sorghum. G3 (Bethesda, Md.). PMID 31852730 DOI: 10.1534/G3.119.400759  0.308
2019 Zucchi MI, Cordeiro EMG, Wu X, Lamana LM, Brown PJ, Manjunatha S, Viana JPG, Omoto C, Pinheiro JB, Clough SJ. Population Genomics of the Neotropical Brown Stink Bug, : The Most Important Emerging Insect Pest to Soybean in Brazil. Frontiers in Genetics. 10: 1035. PMID 31749834 DOI: 10.3389/Fgene.2019.01035  0.516
2019 Zucchi MI, Cordeiro EMG, Allen C, Novello M, Viana JPG, Brown PJ, Manjunatha S, Omoto C, Pinheiro JB, Clough SJ. Patterns of Genome-Wide Variation, Population Differentiation and SNP Discovery of the Red Banded Stink Bug (Piezodorus guildinii). Scientific Reports. 9: 14480. PMID 31597944 DOI: 10.1038/S41598-019-50999-Z  0.455
2019 Choquette NE, Ogut F, Wertin TM, Montes CM, Sorgini CA, Morse AM, Brown PJ, Leakey ADB, McIntyre LM, Ainsworth EA. Uncovering hidden genetic variation in photosynthesis of field-grown maize under ozone pollution. Global Change Biology. PMID 31571358 DOI: 10.1111/Gcb.14794  0.421
2019 Ajayi OO, Everhart S, Brown PJ, Tenuta A, Dorrance AE, Bradley CA. Genetic Structure of AG-2-2IIIB from Soybean in Illinois, Ohio, and Ontario. Phytopathology. PMID 31381483 DOI: 10.1094/Phyto-01-19-0015-R  0.401
2019 Francischini FJB, Cordeiro EMG, de Campos JB, Alves-Pereira A, Viana JPG, Wu X, Wei W, Brown P, Joyce A, Murua G, Fogliata S, Clough SJ, Zucchi MI. Diatraea saccharalis history of colonization in the Americas. The case for human-mediated dispersal. Plos One. 14: e0220031. PMID 31339922 DOI: 10.1371/Journal.Pone.0220031  0.42
2019 Wen L, Chang HX, Brown PJ, Domier LL, Hartman GL. Genome-wide association and genomic prediction identifies soybean cyst nematode resistance in common bean including a syntenic region to soybean locus. Horticulture Research. 6: 9. PMID 30622722 DOI: 10.1038/S41438-018-0085-3  0.314
2019 Valluru R, Gazave EE, Fernandes SB, Ferguson JN, Lozano R, Hirannaiah P, Zuo T, Brown PJ, Leakey ADB, Gore MA, Buckler ES, Bandillo N. Deleterious Mutation Burden and its Association with Complex Traits in Sorghum (). Genetics. PMID 30622134 DOI: 10.1534/Genetics.118.301742  0.388
2019 Swarm SA, Sun L, Wang X, Wang W, Brown PJ, Ma J, Nelson RL. Genetic dissection of domestication-related traits in soybean through genotyping-by-sequencing of two interspecific mapping populations. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 30607438 DOI: 10.1007/s00122-018-3272-6  0.452
2019 Murray SC, Mayfield K, Pekar J, Brown P, Lorenz A, Isakeit T, Odvody G, Xu W, Betran J. Tx741, Tx777, Tx779, Tx780, and Tx782 Inbred Maize Lines for Yield and Southern United States Stress Adaptation Journal of Plant Registrations. 13: 258-269. DOI: 10.3198/Jpr2017.07.0044Crp  0.58
2019 Montgomery JS, Sadeque A, Giacomini DA, Brown PJ, Tranel PJ. Sex-Specific Markers for Waterhemp (Amaranthus tuberculatus) and Palmer Amaranth (Amaranthus palmeri) Weed Science. 67: 412-418. DOI: 10.1017/Wsc.2019.27  0.356
2018 Xia J, Zhao Y, Burks P, Pauly M, Brown PJ. A sorghum NAC gene is associated with variation in biomass properties and yield potential. Plant Direct. 2: e00070. PMID 31245734 DOI: 10.1002/pld3.70  0.34
2018 Paulsmeyer MN, Brown PJ, Juvik JA. Discovery of Anthocyanin Acyltransferase1 (AAT1) in Maize Using Genotyping-by-Sequencing (GBS). G3 (Bethesda, Md.). PMID 30257861 DOI: 10.1534/G3.118.200630  0.409
2018 Fernandes SB, Dias KOG, Ferreira DF, Brown PJ. Efficiency of multi-trait, indirect, and trait-assisted genomic selection for improvement of biomass sorghum. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 131: 747-755. PMID 29218378 DOI: 10.1007/S00122-017-3033-Y  0.481
2017 Avalos A, Pan H, Li C, Acevedo-Gonzalez JP, Rendon G, Fields CJ, Brown PJ, Giray T, Robinson GE, Hudson ME, Zhang G. A soft selective sweep during rapid evolution of gentle behaviour in an Africanized honeybee. Nature Communications. 8: 1550. PMID 29142254 DOI: 10.1038/S41467-017-01800-0  0.486
2017 Yendrek CR, Erice G, Montes CM, Tomaz T, Sorgini CA, Brown PJ, McIntyre LM, Leakey ADB, Ainsworth EA. Elevated ozone reduces photosynthetic carbon gain by accelerating leaf senescence of inbred and hybrid maize in a genotype-specific manner. Plant, Cell & Environment. PMID 29044553 DOI: 10.1111/Pce.13075  0.326
2017 Migicovsky Z, Sawler J, Gardner KM, Aradhya MK, Prins BH, Schwaninger HR, Bustamante CD, Buckler ES, Zhong GY, Brown PJ, Myles S. Patterns of genomic and phenomic diversity in wine and table grapes. Horticulture Research. 4: 17035. PMID 28791127 DOI: 10.1038/Hortres.2017.35  0.429
2017 Yendrek CR, Tomaz T, Montes CM, Cao Y, Morse AM, Brown PJ, McIntyre LM, Leakey AD, Ainsworth EA. High-Throughput Phenotyping of Maize Leaf Physiological and Biochemical Traits Using Hyperspectral Reflectance. Plant Physiology. 173: 614-626. PMID 28049858 DOI: 10.1104/Pp.16.01447  0.455
2016 Arruda MP, Brown P, Brown-Guedira G, Krill AM, Thurber C, Merrill KR, Foresman BJ, Kolb FL. Genome-Wide Association Mapping of Fusarium Head Blight Resistance in Wheat using Genotyping-by-Sequencing. The Plant Genome. 9. PMID 27898754 DOI: 10.3835/Plantgenome2015.04.0028  0.482
2016 Brown PJ. Plant breeding: Effective use of genetic diversity. Nature Plants. 2: 16154. PMID 27701395 DOI: 10.1038/Nplants.2016.154  0.439
2016 Migicovsky Z, Sawler J, Money D, Eibach R, Miller AJ, Luby JJ, Jamieson AR, Velasco D, von Kintzel S, Warner J, Wührer W, Brown PJ, Myles S. Genomic ancestry estimation quantifies use of wild species in grape breeding. Bmc Genomics. 17: 478. PMID 27357509 DOI: 10.1186/S12864-016-2834-8  0.346
2016 Chang HX, Brown PJ, Lipka AE, Domier LL, Hartman GL. Genome-wide association and genomic prediction identifies associated loci and predicts the sensitivity of Tobacco ringspot virus in soybean plant introductions. Bmc Genomics. 17: 153. PMID 26924079 DOI: 10.1186/S12864-016-2487-7  0.472
2016 Arruda MP, Lipka AE, Brown PJ, Krill AM, Thurber C, Brown-Guedira G, Dong Y, Foresman BJ, Kolb FL. Comparing genomic selection and marker-assisted selection for Fusarium head blight resistance in wheat (Triticum aestivum L.) Molecular Breeding. 36: 84. DOI: 10.1007/S11032-016-0508-5  0.453
2016 Crawford J, Brown PJ, Voigt T, Lee DK. Linkage mapping in prairie cordgrass (Spartina pectinata Link) using genotyping-by-sequencing Molecular Breeding. 36: 62. DOI: 10.1007/S11032-016-0484-9  0.505
2015 Hayes CM, Burow GB, Brown PJ, Thurber C, Xin Z, Burke JJ. Natural Variation in Synthesis and Catabolism Genes Influences Dhurrin Content in Sorghum. The Plant Genome. 8: eplantgenome2014.09.. PMID 33228310 DOI: 10.3835/Plantgenome2014.09.0048  0.486
2015 Arruda MP, Brown PJ, Lipka AE, Krill AM, Thurber C, Kolb FL. Genomic Selection for Predicting Fusarium Head Blight Resistance in a Wheat Breeding Program. The Plant Genome. 8: eplantgenome2015.01.. PMID 33228272 DOI: 10.3835/Plantgenome2015.01.0003  0.444
2015 Klein RR, Miller FR, Dugas DV, Brown PJ, Burrell AM, Klein PE. Allelic variants in the PRR37 gene and the human-mediated dispersal and diversification of sorghum. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 25982128 DOI: 10.1007/S00122-015-2523-Z  0.393
2015 Burks PS, Kaiser CM, Hawkins EM, Brown PJ. Genomewide association for sugar yield in sweet sorghum Crop Science. 55: 2138-2148. DOI: 10.2135/Cropsci2015.01.0057  0.447
2015 Chen SF, Danao MGC, Brown PJ. Stalk strength and sugar content of 55 dual-purpose sorghum inbreds Applied Engineering in Agriculture. 31: 489-496. DOI: 10.13031/Aea.31.10559  0.312
2014 Perez IB, Brown PJ. The role of ROS signaling in cross-tolerance: from model to crop. Frontiers in Plant Science. 5: 754. PMID 25566313 DOI: 10.3389/Fpls.2014.00754  0.336
2014 Chuck GS, Brown PJ, Meeley R, Hake S. Maize SBP-box transcription factors unbranched2 and unbranched3 affect yield traits by regulating the rate of lateral primordia initiation. Proceedings of the National Academy of Sciences of the United States of America. 111: 18775-80. PMID 25512525 DOI: 10.1073/Pnas.1407401112  0.398
2014 Higgins RH, Thurber CS, Assaranurak I, Brown PJ. Multiparental mapping of plant height and flowering time QTL in partially isogenic sorghum families. G3 (Bethesda, Md.). 4: 1593-602. PMID 25237111 DOI: 10.1534/G3.114.013318  0.475
2014 Gardner KM, Brown P, Cooke TF, Cann S, Costa F, Bustamante C, Velasco R, Troggio M, Myles S. Fast and cost-effective genetic mapping in apple using next-generation sequencing. G3 (Bethesda, Md.). 4: 1681-7. PMID 25031181 DOI: 10.1534/G3.114.011023  0.486
2014 Chang S, Thurber CS, Brown PJ, Hartman GL, Lambert KN, Domier LL. Comparative mapping of the wild perennial Glycine latifolia and soybean (G. max) reveals extensive chromosome rearrangements in the genus Glycine. Plos One. 9: e99427. PMID 24937645 DOI: 10.1371/Journal.Pone.0099427  0.44
2013 Thurber CS, Ma JM, Higgins RH, Brown PJ. Retrospective genomic analysis of sorghum adaptation to temperate-zone grain production. Genome Biology. 14: R68. PMID 23803286 DOI: 10.1186/Gb-2013-14-6-R68  0.438
2013 Morris GP, Ramu P, Deshpande SP, Hash CT, Shah T, Upadhyaya HD, Riera-Lizarazu O, Brown PJ, Acharya CB, Mitchell SE, Harriman J, Glaubitz JC, Buckler ES, Kresovich S. Population genomic and genome-wide association studies of agroclimatic traits in sorghum. Proceedings of the National Academy of Sciences of the United States of America. 110: 453-8. PMID 23267105 DOI: 10.1073/Pnas.1215985110  0.694
2012 Poland JA, Brown PJ, Sorrells ME, Jannink JL. Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach. Plos One. 7: e32253. PMID 22389690 DOI: 10.1371/Journal.Pone.0032253  0.482
2011 Brown PJ, Upadyayula N, Mahone GS, Tian F, Bradbury PJ, Myles S, Holland JB, Flint-Garcia S, McMullen MD, Buckler ES, Rocheford TR. Distinct genetic architectures for male and female inflorescence traits of maize. Plos Genetics. 7: e1002383. PMID 22125498 DOI: 10.1371/Journal.Pgen.1002383  0.543
2011 Myles S, Boyko AR, Owens CL, Brown PJ, Grassi F, Aradhya MK, Prins B, Reynolds A, Chia JM, Ware D, Bustamante CD, Buckler ES. Genetic structure and domestication history of the grape. Proceedings of the National Academy of Sciences of the United States of America. 108: 3530-5. PMID 21245334 DOI: 10.1073/Pnas.1009363108  0.487
2011 Tian F, Bradbury PJ, Brown PJ, Hung H, Sun Q, Flint-Garcia S, Rocheford TR, McMullen MD, Holland JB, Buckler ES. Genome-wide association study of leaf architecture in the maize nested association mapping population. Nature Genetics. 43: 159-62. PMID 21217756 DOI: 10.1038/Ng.746  0.568
2011 Brown PJ, Myles S, Kresovich S. Genetic Support for Phenotype‐based Racial Classification in Sorghum Crop Science. 51: 224-230. DOI: 10.2135/Cropsci2010.03.0179  0.659
2009 McMullen MD, Kresovich S, Villeda HS, Bradbury P, Li H, Sun Q, Flint-Garcia S, Thornsberry J, Acharya C, Bottoms C, Brown P, Browne C, Eller M, Guill K, Harjes C, et al. Genetic properties of the maize nested association mapping population. Science (New York, N.Y.). 325: 737-40. PMID 19661427 DOI: 10.1126/Science.1174320  0.693
2009 Buckler ES, Holland JB, Bradbury PJ, Acharya CB, Brown PJ, Browne C, Ersoz E, Flint-Garcia S, Garcia A, Glaubitz JC, Goodman MM, Harjes C, Guill K, Kroon DE, Larsson S, et al. The genetic architecture of maize flowering time. Science (New York, N.Y.). 325: 714-8. PMID 19661422 DOI: 10.1126/Science.1174276  0.699
2009 Myles S, Peiffer J, Brown PJ, Ersoz ES, Zhang Z, Costich DE, Buckler ES. Association mapping: critical considerations shift from genotyping to experimental design. The Plant Cell. 21: 2194-202. PMID 19654263 DOI: 10.1105/Tpc.109.068437  0.482
2009 Pressoir G, Brown PJ, Zhu W, Upadyayula N, Rocheford T, Buckler ES, Kresovich S. Natural variation in maize architecture is mediated by allelic differences at the PINOID co-ortholog barren inflorescence2. The Plant Journal : For Cell and Molecular Biology. 58: 618-28. PMID 19154226 DOI: 10.1111/J.1365-313X.2009.03802.X  0.686
2008 Brown PJ, Rooney WL, Franks C, Kresovich S. Efficient mapping of plant height quantitative trait loci in a sorghum association population with introgressed dwarfing genes. Genetics. 180: 629-37. PMID 18757942 DOI: 10.1534/Genetics.108.092239  0.67
2008 Casa AM, Pressoir G, Brown PJ, Mitchell SE, Rooney WL, Tuinstra MR, Franks CD, Kresovich S. Community Resources and Strategies for Association Mapping in Sorghum Crop Science. 48: 30-40. DOI: 10.2135/Cropsci2007.02.0080  0.754
2006 Brown PJ, Klein PE, Bortiri E, Acharya CB, Rooney WL, Kresovich S. Inheritance of inflorescence architecture in sorghum Theoretical and Applied Genetics. 113: 931-942. PMID 16847662 DOI: 10.1007/S00122-006-0352-9  0.683
2006 Feltus FA, Hart GE, Schertz KF, Casa AM, Kresovich S, Abraham S, Klein PE, Brown PJ, Paterson AH. Alignment of genetic maps and QTLs between inter- and intra-specific sorghum populations. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 112: 1295-305. PMID 16491426 DOI: 10.1007/S00122-006-0232-3  0.744
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