| Year |
Citation |
Score |
| 2024 |
Tsang KK, Lam MMC, Wick RR, Wyres KL, Bachman M, Baker S, Barry K, Brisse S, Campino S, Chiaverini A, Cirillo DM, Clark T, Corander J, Corbella M, Cornacchia A, ... ... Feil EJ, et al. Diversity, functional classification and genotyping of SHV β-lactamases in . Microbial Genomics. 10. PMID 39432416 DOI: 10.1099/mgen.0.001294 |
0.308 |
|
| 2024 |
Matlock W, Shaw LP, Sheppard SK, Feil E. Towards quantifying plasmid similarity. Microbial Genomics. 10. PMID 39264704 DOI: 10.1099/mgen.0.001290 |
0.372 |
|
| 2023 |
Calland JK, Haukka K, Kpordze SW, Brusah A, Corbella M, Merla C, Samuelsen Ø, Feil EJ, Sassera D, Karikari AB, Saba CKS, Thorpe HA, Corander J. Population structure and antimicrobial resistance among Klebsiella isolates sampled from human, animal, and environmental sources in Ghana: a cross-sectional genomic One Health study. The Lancet. Microbe. PMID 37858320 DOI: 10.1016/S2666-5247(23)00208-2 |
0.314 |
|
| 2023 |
Coyle NM, O'Toole C, Thomas JCL, Ryder D, Feil EJ, Geary M, Bean TP, Joseph AW, Waine A, Cheslett D, Verner-Jeffreys DW. clade A and clade B isolates are associated with Pacific oyster () disease outbreaks across Ireland. Microbial Genomics. 9. PMID 37540224 DOI: 10.1099/mgen.0.001078 |
0.784 |
|
| 2023 |
Werner G, Couto N, Feil EJ, Novais A, Hegstad K, Howden BP, Friedrich AW, Reuter S. Taking hospital pathogen surveillance to the next level. Microbial Genomics. 9. PMID 37099616 DOI: 10.1099/mgen.0.001008 |
0.374 |
|
| 2023 |
Habib S, Gibbon MJ, Couto N, Kakar K, Habib S, Samad A, Munir A, Fatima F, Mohsin M, Feil EJ. The Diversity, Resistance Profiles and Plasmid Content of spp. Recovered from Dairy Farms Located around Three Cities in Pakistan. Antibiotics (Basel, Switzerland). 12. PMID 36978406 DOI: 10.3390/antibiotics12030539 |
0.396 |
|
| 2022 |
Raineri EJM, Maaß S, Wang M, Brushett S, Palma Medina LM, Sampol Escandell N, Altulea D, Raangs E, de Jong A, Vera Murguia E, Feil EJ, Friedrich AW, Buist G, Becher D, García-Cobos S, et al. Staphylococcus aureus populations from the gut and the blood are not distinguished by virulence traits-a critical role of host barrier integrity. Microbiome. 10: 239. PMID 36567349 DOI: 10.1186/s40168-022-01419-4 |
0.347 |
|
| 2022 |
Thorpe HA, Booton R, Kallonen T, Gibbon MJ, Couto N, Passet V, López-Fernández S, Rodrigues C, Matthews L, Mitchell S, Reeve R, David S, Merla C, Corbella M, Ferrari C, ... ... Feil EJ, et al. A large-scale genomic snapshot of Klebsiella spp. isolates in Northern Italy reveals limited transmission between clinical and non-clinical settings. Nature Microbiology. PMID 36411354 DOI: 10.1038/s41564-022-01263-0 |
0.359 |
|
| 2022 |
Tucker K, Mageiros L, Carstens A, Bröcker L, Archer E, Smith K, Mourkas E, Pascoe B, Nel D, Meric G, Sheppard SK, Kasprzyk-Hordern B, Botes M, Feil EJ, Wolfaardt G. Spatiotemporal Investigation of Antibiotic Resistance in the Urban Water Cycle Influenced by Environmental and Anthropogenic Activity. Microbiology Spectrum. e0247322. PMID 36036576 DOI: 10.1128/spectrum.02473-22 |
0.731 |
|
| 2022 |
Fountain K, Barbon A, Gibbon MJ, Lloyd DH, Loeffler A, Feil EJ. Staphylococcus aureus lineages associated with a free-ranging population of the fruit bat Pteropus livingstonii retained over 25 years in captivity. Scientific Reports. 12: 13457. PMID 35931727 DOI: 10.1038/s41598-022-17835-3 |
0.422 |
|
| 2022 |
Elder FCT, Pascoe B, Wells S, Sheppard SK, Snape J, Gaze WH, Feil EJ, Kasprzyk-Hordern B. Stereoselective metabolism of chloramphenicol by bacteria isolated from wastewater, and the importance of stereochemistry in environmental risk assessments for antibiotics. Water Research. 217: 118415. PMID 35430467 DOI: 10.1016/j.watres.2022.118415 |
0.628 |
|
| 2021 |
Argimón S, David S, Underwood A, Abrudan M, Wheeler NE, Kekre M, Abudahab K, Yeats CA, Goater R, Taylor B, Harste H, Muddyman D, Feil EJ, Brisse S, Holt K, et al. Rapid Genomic Characterization and Global Surveillance of Klebsiella Using Pathogenwatch. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 73: S325-S335. PMID 34850838 DOI: 10.1093/cid/ciab784 |
0.335 |
|
| 2021 |
Calland JK, Pascoe B, Bayliss SC, Mourkas E, Berthenet E, Thorpe HA, Hitchings MD, Feil EJ, Corander J, Blaser MJ, Falush D, Sheppard SK. Quantifying bacterial evolution in the wild: A birthday problem for Campylobacter lineages. Plos Genetics. 17: e1009829. PMID 34582435 DOI: 10.1371/journal.pgen.1009829 |
0.763 |
|
| 2021 |
Elder FCT, Proctor K, Barden R, Gaze WH, Snape J, Feil EJ, Kasprzyk-Hordern B. Spatiotemporal profiling of antibiotics and resistance genes in a river catchment: Human population as the main driver of antibiotic and antibiotic resistance gene presence in the environment. Water Research. 203: 117533. PMID 34416649 DOI: 10.1016/j.watres.2021.117533 |
0.636 |
|
| 2021 |
Fountain K, Blackett T, Butler H, Carchedi C, Schilling AK, Meredith A, Gibbon MJ, Lloyd DH, Loeffler A, Feil EJ. Fatal exudative dermatitis in island populations of red squirrels (): spillover of a virulent clone (ST49) from reservoir hosts. Microbial Genomics. 7. PMID 34016250 DOI: 10.1099/mgen.0.000565 |
0.42 |
|
| 2021 |
Elder FCT, Feil EJ, Pascoe B, Sheppard SK, Snape J, Gaze WH, Kasprzyk-Hordern B. Stereoselective Bacterial Metabolism of Antibiotics in Environmental Bacteria - A Novel Biochemical Workflow. Frontiers in Microbiology. 12: 562157. PMID 33935981 DOI: 10.3389/fmicb.2021.562157 |
0.658 |
|
| 2021 |
Mageiros L, Méric G, Bayliss SC, Pensar J, Pascoe B, Mourkas E, Calland JK, Yahara K, Murray S, Wilkinson TS, Williams LK, Hitchings MD, Porter J, Kemmett K, Feil EJ, et al. Author Correction: Genome evolution and the emergence of pathogenicity in avian Escherichia coli. Nature Communications. 12: 1934. PMID 33753730 DOI: 10.1038/s41467-021-22238-5 |
0.754 |
|
| 2021 |
Fountain K, Gibbon MJ, Loeffler A, Feil EJ. Closed genome sequences of sp. nov. and sp. nov. isolated from captive fruit bats (). International Journal of Systematic and Evolutionary Microbiology. 71. PMID 33734958 DOI: 10.1099/ijsem.0.004715 |
0.328 |
|
| 2021 |
Batisti Biffignandi G, Gibbon MJ, Corbella M, Thorpe HA, Merla C, Castelli M, Kallonen T, Pegrum K, Brisse S, Corander J, Marone P, Feil EJ, Sassera D. Genome of Superficieibacter maynardsmithii, a novel, antibiotic susceptible representative of Enterobacteriaceae. G3 (Bethesda, Md.). 11. PMID 33615377 DOI: 10.1093/g3journal/jkab019 |
0.391 |
|
| 2021 |
Mageiros L, Méric G, Bayliss SC, Pensar J, Pascoe B, Mourkas E, Calland JK, Yahara K, Murray S, Wilkinson TS, Williams LK, Hitchings MD, Porter J, Kemmett K, Feil EJ, et al. Genome evolution and the emergence of pathogenicity in avian Escherichia coli. Nature Communications. 12: 765. PMID 33536414 DOI: 10.1038/s41467-021-20988-w |
0.774 |
|
| 2021 |
Gibbon MJ, Couto N, David S, Barden R, Standerwick R, Jagadeesan K, Birkwood H, Dulyayangkul P, Avison MB, Kannan A, Kibbey D, Craft T, Habib S, Thorpe HA, Corander J, ... ... Feil EJ, et al. A high prevalence of in () and related species in hospital wastewater in South West England. Microbial Genomics. PMID 33416467 DOI: 10.1099/mgen.0.000509 |
0.332 |
|
| 2020 |
Mäklin T, Kallonen T, David S, Boinett CJ, Pascoe B, Méric G, Aanensen DM, Feil EJ, Baker S, Parkhill J, Sheppard SK, Corander J, Honkela A. High-resolution sweep metagenomics using fast probabilistic inference. Wellcome Open Research. 5: 14. PMID 34746439 DOI: 10.12688/wellcomeopenres.15639.2 |
0.356 |
|
| 2020 |
Abdelbary MMH, Feil EJ, Senn L, Petignat C, Prod'hom G, Schrenzel J, François P, Werner G, Layer F, Strommenger B, Pantosti A, Monaco M, Denis O, Deplano A, Grundmann H, et al. Phylogeographical Analysis Reveals the Historic Origin, Emergence, and Evolutionary Dynamics of Methicillin-Resistant ST228. Frontiers in Microbiology. 11: 2063. PMID 32983046 DOI: 10.3389/fmicb.2020.02063 |
0.376 |
|
| 2020 |
David S, Cohen V, Reuter S, Sheppard AE, Giani T, Parkhill J, Rossolini GM, Feil EJ, Grundmann H, Aanensen DM. Integrated chromosomal and plasmid sequence analyses reveal diverse modes of carbapenemase gene spread among . Proceedings of the National Academy of Sciences of the United States of America. 117: 25043-25054. PMID 32968015 DOI: 10.1073/pnas.2003407117 |
0.389 |
|
| 2020 |
Coyle NM, Bartie KL, Bayliss SC, Bekaert M, Adams A, McMillan S, Verner-Jeffreys DW, Desbois AP, Feil EJ. A Hopeful Sea-Monster: A Very Large Homologous Recombination Event Impacting the Core Genome of the Marine Pathogen . Frontiers in Microbiology. 11: 1430. PMID 32695083 DOI: 10.3389/Fmicb.2020.01430 |
0.788 |
|
| 2020 |
Elder FCT, Feil EJ, Snape J, Gaze WH, Kasprzyk-Hordern B. The role of stereochemistry of antibiotic agents in the development of antibiotic resistance in the environment. Environment International. 139: 105681. PMID 32251898 DOI: 10.1016/j.envint.2020.105681 |
0.625 |
|
| 2020 |
Bayliss SC, Thorpe HA, Coyle NM, Sheppard SK, Feil EJ. PIRATE: A fast and scalable pangenomics toolbox for clustering diverged orthologues in bacteria. Gigascience. 8. PMID 31598686 DOI: 10.1093/gigascience/giz119 |
0.782 |
|
| 2019 |
David S, Reuter S, Harris SR, Glasner C, Feltwell T, Argimon S, Abudahab K, Goater R, Giani T, Errico G, Aspbury M, Sjunnebo S, Feil EJ, et al. Epidemic of carbapenem-resistant Klebsiella pneumoniae in Europe is driven by nosocomial spread. Nature Microbiology. PMID 31358985 DOI: 10.1038/s41564-019-0492-8 |
0.33 |
|
| 2019 |
Yang C, Pei X, Wu Y, Yan L, Yan Y, Song Y, Coyle NM, Martinez-Urtaza J, Quince C, Hu Q, Jiang M, Feil E, Yang D, Song Y, Zhou D, et al. Recent mixing of Vibrio parahaemolyticus populations. The Isme Journal. PMID 31235840 DOI: 10.1038/S41396-019-0461-5 |
0.79 |
|
| 2019 |
Pinholt M, Bayliss SC, Gumpert H, Worning P, Jensen VVS, Pedersen M, Feil EJ, Westh H. WGS of 1058 Enterococcus faecium from Copenhagen, Denmark, reveals rapid clonal expansion of vancomycin-resistant clone ST80 combined with widespread dissemination of a vanA-containing plasmid and acquisition of a heterogeneous accessory genome. The Journal of Antimicrobial Chemotherapy. PMID 30929020 DOI: 10.1093/jac/dkz118 |
0.356 |
|
| 2019 |
Du X, Bayliss SC, Feil EJ, Liu Y, Wang C, Zhang G, Zhou D, Wei D, Tang N, Leclercq SO, Feng J. Real time monitoring of Aeromonas salmonicida evolution in response to successive antibiotic therapies in a commercial fish farm. Environmental Microbiology. PMID 30637959 DOI: 10.1111/1462-2920.14531 |
0.302 |
|
| 2019 |
Hernandez RJ, Hesse E, Dowling AJ, Coyle NM, Feil EJ, Gaze WH, Vos M. Using the wax moth larva infection model to detect emerging bacterial pathogens. Peerj. 6: e6150. PMID 30631644 DOI: 10.7717/peerj.6150 |
0.801 |
|
| 2018 |
Méric G, Mageiros L, Pensar J, Laabei M, Yahara K, Pascoe B, Kittiwan N, Tadee P, Post V, Lamble S, Bowden R, Bray JE, Morgenstern M, Jolley KA, Maiden MCJ, ... Feil EJ, et al. Disease-associated genotypes of the commensal skin bacterium Staphylococcus epidermidis. Nature Communications. 9: 5034. PMID 30487573 DOI: 10.1038/S41467-018-07368-7 |
0.317 |
|
| 2018 |
Al-Khafaji AM, Clegg SR, Pinder AC, Luu L, Hansford KM, Seelig F, Dinnis RE, Margos G, Medlock JM, Feil EJ, Darby AC, McGarry JW, Gilbert L, Plantard O, Sassera D, et al. Multi-locus sequence typing of Ixodes ricinus and its symbiont Candidatus Midichloria mitochondrii across Europe reveals evidence of local co-cladogenesis in Scotland. Ticks and Tick-Borne Diseases. PMID 30197267 DOI: 10.1016/j.ttbdis.2018.08.016 |
0.766 |
|
| 2018 |
Bayliss SC, Verner-Jeffreys DW, Ryder D, Suarez R, Ramirez R, Romero J, Pascoe B, Sheppard SK, Godoy M, Feil EJ. Genomic epidemiology of the commercially important pathogen Renibacterium salmoninarum within the Chilean salmon industry. Microbial Genomics. PMID 30040063 DOI: 10.1099/mgen.0.000201 |
0.373 |
|
| 2018 |
Richardson EJ, Bacigalupe R, Harrison EM, Weinert LA, Lycett S, Vrieling M, Robb K, Hoskisson PA, Holden MTG, Feil EJ, Paterson GK, Tong SYC, Shittu A, van Wamel W, Aanensen DM, et al. Gene exchange drives the ecological success of a multi-host bacterial pathogen. Nature Ecology & Evolution. PMID 30038246 DOI: 10.1038/S41559-018-0617-0 |
0.42 |
|
| 2018 |
Tyler S, Tyson S, Dibernardo A, Drebot M, Feil EJ, Graham M, Knox NC, Lindsay LR, Margos G, Mechai S, Van Domselaar G, Thorpe HA, Ogden NH. Whole genome sequencing and phylogenetic analysis of strains of the agent of Lyme disease Borrelia burgdorferi from Canadian emergence zones. Scientific Reports. 8: 10552. PMID 30002414 DOI: 10.1038/S41598-018-28908-7 |
0.348 |
|
| 2018 |
Thorpe HA, Bayliss SC, Sheppard SK, Feil EJ. Piggy: a rapid, large-scale pan-genome analysis tool for intergenic regions in bacteria. Gigascience. 7: 1-11. PMID 29635296 DOI: 10.1093/gigascience/giy015 |
0.362 |
|
| 2017 |
Roig FJ, González-Candelas F, Sanjuán E, Fouz B, Feil EJ, Llorens C, Baker-Austin C, Oliver JD, Danin-Poleg Y, Gibas CJ, Kashi Y, Gulig PA, Morrison SS, Amaro C. Phylogeny of Vibrio vulnificus from the Analysis of the Core-Genome: Implications for Intra-Species Taxonomy. Frontiers in Microbiology. 8: 2613. PMID 29358930 DOI: 10.3389/Fmicb.2017.02613 |
0.32 |
|
| 2017 |
López-Hermoso C, de la Haba RR, Sánchez-Porro C, Bayliss SC, Feil EJ, Ventosa A. Draft Genome Sequences of , , , subsp. , subsp. , and 29 New Isolates Belonging to the Genus . Genome Announcements. 5. PMID 28684561 DOI: 10.1128/genomeA.00244-17 |
0.352 |
|
| 2017 |
Bayliss SC, Hunt VL, Yokoyama M, Thorpe HA, Feil EJ. The use of Oxford Nanopore native barcoding for complete genome assembly. Gigascience. PMID 28327913 DOI: 10.1093/gigascience/gix001 |
0.344 |
|
| 2017 |
Thorpe HA, Bayliss SC, Hurst LD, Feil EJ. Comparative Analyses of Selection Operating on Non-translated Intergenic Regions of Diverse Bacterial Species. Genetics. PMID 28280056 DOI: 10.1534/genetics.116.195784 |
0.37 |
|
| 2017 |
Bayliss SC, Verner-Jeffreys DW, Bartie KL, Aanensen DM, Sheppard SK, Adams A, Feil EJ. The Promise of Whole Genome Pathogen Sequencing for the Molecular Epidemiology of Emerging Aquaculture Pathogens. Frontiers in Microbiology. 8: 121. PMID 28217117 DOI: 10.3389/fmicb.2017.00121 |
0.352 |
|
| 2016 |
Sankar A, Malone B, Bayliss SC, Pascoe B, Méric G, Hitchings MD, Sheppard SK, Feil EJ, Corander J, Honkela A. Bayesian identification of bacterial strains from sequencing data. Microbial Genomics. 2: e000075. PMID 28348870 DOI: 10.1099/mgen.0.000075 |
0.353 |
|
| 2016 |
Brynildsrud O, Gulla S, Feil EJ, Nørstebø SF, Rhodes LD. Identifying copy number variation of the dominant virulence factors msa and p22 within genomes of the fish pathogen Renibacterium salmoninarum. Microbial Genomics. 2: e000055. PMID 28348850 DOI: 10.1099/mgen.0.000055 |
0.383 |
|
| 2016 |
Pinholt M, Gumpert H, Bayliss S, Nielsen JB, Vorobieva V, Pedersen M, Feil E, Worning P, Westh H. Genomic analysis of 495 vancomycin-resistant Enterococcus faecium reveals broad dissemination of a vanA plasmid in more than 19 clones from Copenhagen, Denmark. The Journal of Antimicrobial Chemotherapy. 72: 40-47. PMID 27605596 DOI: 10.1093/jac/dkw360 |
0.32 |
|
| 2016 |
Senghore M, Bayliss SC, Kwambana-Adams BA, Foster-Nyarko E, Manneh J, Dione M, Badji H, Ebruke C, Doughty EL, Thorpe HA, Jasinska AJ, Schmitt CA, Cramer JD, Turner TR, Weinstock G, ... ... Feil EJ, et al. Whole-genome sequencing reveals transmission of Staphylococcus aureus from humans to green monkeys in The Gambia. Applied and Environmental Microbiology. PMID 27474712 DOI: 10.1128/Aem.01496-16 |
0.338 |
|
| 2016 |
Aanensen DM, Feil EJ, Holden MT, Dordel J, Yeats CA, Fedosejev A, Goater R, Castillo-Ramírez S, Corander J, Colijn C, Chlebowicz MA, Schouls L, Heck M, Pluister G, Ruimy R, et al. Whole-Genome Sequencing for Routine Pathogen Surveillance in Public Health: a Population Snapshot of Invasive Staphylococcus aureus in Europe. Mbio. 7. PMID 27150362 DOI: 10.1128/Mbio.00444-16 |
0.399 |
|
| 2016 |
Numminen E, Gutmann M, Shubin M, Marttinen P, Méric G, van Schaik W, Coque TM, Baquero F, Willems RJ, Sheppard SK, Feil EJ, Hanage WP, Corander J. The impact of host metapopulation structure on the population genetics of colonizing bacteria. Journal of Theoretical Biology. 396: 53-62. PMID 26916623 DOI: 10.1016/J.Jtbi.2016.02.019 |
0.371 |
|
| 2016 |
Mechai S, Margos G, Feil EJ, Barairo N, Lindsay LR, Michel P, Ogden NH. Evidence for Host-Genotype Associations of Borrelia burgdorferi Sensu Stricto. Plos One. 11: e0149345. PMID 26901761 DOI: 10.1371/Journal.Pone.0149345 |
0.33 |
|
| 2015 |
Reuter S, Török EM, Holden MT, Reynolds R, Raven KE, Blane B, Donker T, Bentley SD, Aanensen DM, Grundmann H, Feil EJ, Spratt BG, Parkhill J, Peacock SJ. Building a genomic framework for prospective MRSA surveillance in the United Kingdom and the Republic of Ireland. Genome Research. PMID 26672018 DOI: 10.1101/gr.196709.115 |
0.423 |
|
| 2015 |
Laabei M, Uhlemann AC, Lowy FD, Austin ED, Yokoyama M, Ouadi K, Feil E, Thorpe HA, Williams B, Perkins M, Peacock SJ, Clarke SR, Dordel J, Holden M, Votintseva AA, et al. Evolutionary Trade-Offs Underlie the Multi-faceted Virulence of Staphylococcus aureus. Plos Biology. 13: e1002229. PMID 26331877 DOI: 10.1371/journal.pbio.1002229 |
0.424 |
|
| 2015 |
Phetsouvanh R, Sonthayanon P, Pukrittayakamee S, Paris DH, Newton PN, Feil EJ, Day NP. The Diversity and Geographical Structure of Orientia tsutsugamushi Strains from Scrub Typhus Patients in Laos. Plos Neglected Tropical Diseases. 9: e0004024. PMID 26317624 DOI: 10.1371/journal.pntd.0004024 |
0.35 |
|
| 2015 |
Méric G, Miragaia M, de Been M, Yahara K, Pascoe B, Mageiros L, Mikhail J, Harris LG, Wilkinson TS, Rolo J, Lamble S, Bray JE, Jolley KA, Hanage WP, Bowden R, ... ... Feil EJ, et al. Ecological Overlap and Horizontal Gene Transfer in Staphylococcus aureus and Staphylococcus epidermidis. Genome Biology and Evolution. 7: 1313-28. PMID 25888688 DOI: 10.1093/Gbe/Evv066 |
0.415 |
|
| 2014 |
Laabei M, Recker M, Rudkin JK, Aldeljawi M, Gulay Z, Sloan TJ, Williams P, Endres JL, Bayles KW, Fey PD, Yajjala VK, Widhelm T, Hawkins E, Lewis K, Parfett S, ... ... Feil EJ, et al. Predicting the virulence of MRSA from its genome sequence. Genome Research. 24: 839-49. PMID 24717264 DOI: 10.1101/Gr.165415.113 |
0.769 |
|
| 2014 |
Budge GE, Shirley MD, Jones B, Quill E, Tomkies V, Feil EJ, Brown MA, Haynes EG. Molecular epidemiology and population structure of the honey bee brood pathogen Melissococcus plutonius. The Isme Journal. 8: 1588-97. PMID 24599072 DOI: 10.1038/ismej.2014.20 |
0.386 |
|
| 2013 |
Dinnis RE, Seelig F, Bormane A, Donaghy M, Vollmer SA, Feil EJ, Kurtenbach K, Margos G. Multilocus sequence typing using mitochondrial genes (mtMLST) reveals geographic population structure of Ixodes ricinus ticks. Ticks and Tick-Borne Diseases. 5: 152-60. PMID 24361120 DOI: 10.1016/j.ttbdis.2013.10.001 |
0.765 |
|
| 2013 |
Shepheard MA, Fleming VM, Connor TR, Corander J, Feil EJ, Fraser C, Hanage WP. Historical zoonoses and other changes in host tropism of Staphylococcus aureus, identified by phylogenetic analysis of a population dataset. Plos One. 8: e62369. PMID 23667472 DOI: 10.1371/Journal.Pone.0062369 |
0.386 |
|
| 2013 |
Theethakaew C, Feil EJ, Castillo-Ramírez S, Aanensen DM, Suthienkul O, Neil DM, Davies RL. Genetic relationships of Vibrio parahaemolyticus isolates from clinical, human carrier, and environmental sources in Thailand, determined by multilocus sequence analysis. Applied and Environmental Microbiology. 79: 2358-70. PMID 23377932 DOI: 10.1128/AEM.03067-12 |
0.333 |
|
| 2013 |
Wellington EM, Boxall AB, Cross P, Feil EJ, Gaze WH, Hawkey PM, Johnson-Rollings AS, Jones DL, Lee NM, Otten W, Thomas CM, Williams AP. The role of the natural environment in the emergence of antibiotic resistance in gram-negative bacteria. The Lancet. Infectious Diseases. 13: 155-65. PMID 23347633 DOI: 10.1016/S1473-3099(12)70317-1 |
0.302 |
|
| 2013 |
Holden MT, Hsu LY, Kurt K, Weinert LA, Mather AE, Harris SR, Strommenger B, Layer F, Witte W, de Lencastre H, Skov R, Westh H, Zemlicková H, Coombs G, Kearns AM, ... ... Feil EJ, et al. A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic. Genome Research. 23: 653-64. PMID 23299977 DOI: 10.1101/Gr.147710.112 |
0.389 |
|
| 2012 |
Castillo-Ramírez S, Corander J, Marttinen P, Aldeljawi M, Hanage WP, Westh H, Boye K, Gulay Z, Bentley SD, Parkhill J, Holden MT, Feil EJ. Phylogeographic variation in recombination rates within a global clone of methicillin-resistant Staphylococcus aureus. Genome Biology. 13: R126. PMID 23270620 DOI: 10.1186/Gb-2012-13-12-R126 |
0.754 |
|
| 2012 |
Priest NK, Rudkin JK, Feil EJ, van den Elsen JM, Cheung A, Peacock SJ, Laabei M, Lucks DA, Recker M, Massey RC. From genotype to phenotype: can systems biology be used to predict Staphylococcus aureus virulence? Nature Reviews. Microbiology. 10: 791-7. PMID 23070558 DOI: 10.1038/Nrmicro2880 |
0.402 |
|
| 2012 |
Feil EJ. The emergence and spread of dysentery. Nature Genetics. 44: 964-5. PMID 22932498 DOI: 10.1038/ng.2389 |
0.4 |
|
| 2012 |
McAdam PR, Templeton KE, Edwards GF, Holden MT, Feil EJ, Aanensen DM, Bargawi HJ, Spratt BG, Bentley SD, Parkhill J, Enright MC, Holmes A, Girvan EK, Godfrey PA, Feldgarden M, et al. Molecular tracing of the emergence, adaptation, and transmission of hospital-associated methicillin-resistant Staphylococcus aureus. Proceedings of the National Academy of Sciences of the United States of America. 109: 9107-12. PMID 22586109 DOI: 10.1073/Pnas.1202869109 |
0.322 |
|
| 2012 |
Ros VI, Fleming VM, Feil EJ, Breeuwer JA. Diversity and recombination in Wolbachia and Cardinium from Bryobia spider mites. Bmc Microbiology. S13. PMID 22375894 DOI: 10.1186/1471-2180-12-S1-S13 |
0.34 |
|
| 2011 |
Lobova TI, Feil EJ, Popova LY. Multiple antibiotic resistance of heterotrophic bacteria isolated from Siberian lakes subjected to differing degrees of anthropogenic impact. Microbial Drug Resistance (Larchmont, N.Y.). 17: 583-91. PMID 22008039 DOI: 10.1089/mdr.2011.0044 |
0.301 |
|
| 2011 |
Holt DC, Holden MT, Tong SY, Castillo-Ramirez S, Clarke L, Quail MA, Currie BJ, Parkhill J, Bentley SD, Feil EJ, Giffard PM. A very early-branching Staphylococcus aureus lineage lacking the carotenoid pigment staphyloxanthin. Genome Biology and Evolution. 3: 881-95. PMID 21813488 DOI: 10.1093/gbe/evr078 |
0.389 |
|
| 2011 |
Castillo-Ramírez S, Harris SR, Holden MTG, He M, Parkhill J, Bentley SD, Feil EJ. The impact of recombination on dN/dS within recently emerged bacterial clones Plos Pathogens. 7. PMID 21779170 DOI: 10.1371/journal.ppat.1002129 |
0.412 |
|
| 2011 |
Willems RJL, Hanage WP, Bessen DE, Feil EJ. Population biology of Gram-positive pathogens: High-risk clones for dissemination of antibiotic resistance Fems Microbiology Reviews. 35: 872-900. PMID 21658083 DOI: 10.1111/j.1574-6976.2011.00284.x |
0.399 |
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| 2011 |
Vollmer SA, Bormane A, Dinnis RE, Seelig F, Dobson AD, Aanensen DM, James MC, Donaghy M, Randolph SE, Feil EJ, Kurtenbach K, Margos G. Host migration impacts on the phylogeography of Lyme Borreliosis spirochaete species in Europe. Environmental Microbiology. 13: 184-92. PMID 20722696 DOI: 10.1111/j.1462-2920.2010.02319.x |
0.761 |
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| 2010 |
Sim BM, Chantratita N, Ooi WF, Nandi T, Tewhey R, Wuthiekanun V, Thaipadungpanit J, Tumapa S, Ariyaratne P, Sung WK, Sem XH, Chua HH, Ramnarayanan K, Lin CH, Liu Y, ... Feil EJ, et al. Genomic acquisition of a capsular polysaccharide virulence cluster by non-pathogenic Burkholderia isolates. Genome Biology. 11: R89. PMID 20799932 DOI: 10.1186/Gb-2010-11-8-R89 |
0.402 |
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| 2010 |
Sonthayanon P, Peacock SJ, Chierakul W, Wuthiekanun V, Blacksell SD, Holden MT, Bentley SD, Feil EJ, Day NP. High rates of homologous recombination in the mite endosymbiont and opportunistic human pathogen Orientia tsutsugamushi. Plos Neglected Tropical Diseases. 4: e752. PMID 20651929 DOI: 10.1371/journal.pntd.0000752 |
0.394 |
|
| 2010 |
Arvand M, Raoult D, Feil EJ. Multi-locus sequence typing of a geographically and temporally diverse sample of the highly clonal human pathogen Bartonella quintana. Plos One. 5: e9765. PMID 20333257 DOI: 10.1371/Journal.Pone.0009765 |
0.333 |
|
| 2010 |
Harris SR, Feil EJ, Holden MT, Quail MA, Nickerson EK, Chantratita N, Gardete S, Tavares A, Day N, Lindsay JA, Edgeworth JD, de Lencastre H, Parkhill J, Peacock SJ, Bentley SD. Evolution of MRSA during hospital transmission and intercontinental spread. Science (New York, N.Y.). 327: 469-74. PMID 20093474 DOI: 10.1126/science.1182395 |
0.388 |
|
| 2009 |
Fan J, Shu M, Zhang G, Zhou W, Jiang Y, Zhu Y, Chen G, Peacock SJ, Wan C, Pan W, Feil EJ. Biogeography and virulence of Staphylococcus aureus. Plos One. 4: e6216. PMID 19593449 DOI: 10.1371/journal.pone.0006216 |
0.333 |
|
| 2009 |
Ruimy R, Armand-Lefevre L, Barbier F, Ruppé E, Cocojaru R, Mesli Y, Maiga A, Benkalfat M, Benchouk S, Hassaine H, Dufourcq JB, Nareth C, Sarthou JL, Andremont A, Feil EJ. Comparisons between geographically diverse samples of carried Staphylococcus aureus Journal of Bacteriology. 191: 5577-5583. PMID 19592594 DOI: 10.1128/JB.00493-09 |
0.339 |
|
| 2008 |
Vitorino LR, Margos G, Feil EJ, Collares-Pereira M, Zé-Zé L, Kurtenbach K. Fine-scale phylogeographic structure of Borrelia lusitaniae revealed by multilocus sequence typing. Plos One. 3: e4002. PMID 19104655 DOI: 10.1371/journal.pone.0004002 |
0.363 |
|
| 2008 |
Ros VI, Fleming VM, Feil EJ, Breeuwer JA. How diverse is the genus Wolbachia? Multiple-gene sequencing reveals a putatively new Wolbachia supergroup recovered from spider mites (Acari: Tetranychidae). Applied and Environmental Microbiology. 75: 1036-43. PMID 19098217 DOI: 10.1128/AEM.01109-08 |
0.364 |
|
| 2008 |
Balbi KJ, Rocha EP, Feil EJ. The temporal dynamics of slightly deleterious mutations in Escherichia coli and Shigella spp. Molecular Biology and Evolution. 26: 345-55. PMID 18984902 DOI: 10.1093/molbev/msn252 |
0.792 |
|
| 2008 |
Margos G, Gatewood AG, Aanensen DM, Hanincová K, Terekhova D, Vollmer SA, Cornet M, Piesman J, Donaghy M, Bormane A, Hurn MA, Feil EJ, Fish D, Casjens S, Wormser GP, et al. MLST of housekeeping genes captures geographic population structure and suggests a European origin of Borrelia burgdorferi. Proceedings of the National Academy of Sciences of the United States of America. 105: 8730-5. PMID 18574151 DOI: 10.1073/Pnas.0800323105 |
0.346 |
|
| 2008 |
Tumapa S, Holden MT, Vesaratchavest M, Wuthiekanun V, Limmathurotsakul D, Chierakul W, Feil EJ, Currie BJ, Day NP, Nierman WC, Peacock SJ. Burkholderia pseudomallei genome plasticity associated with genomic island variation. Bmc Genomics. 9: 190. PMID 18439288 DOI: 10.1186/1471-2164-9-190 |
0.381 |
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| 2008 |
Ruimy R, Maiga A, Armand-Lefevre L, Maiga I, Diallo A, Koumaré AK, Ouattara K, Soumaré S, Gaillard K, Lucet JC, Andremont A, Feil EJ. The carriage population of Staphylococcus aureus from Mali is composed of a combination of pandemic clones and the divergent Panton-Valentine leukocidin-positive genotype ST152 Journal of Bacteriology. 190: 3962-3968. PMID 18375551 DOI: 10.1128/JB.01947-07 |
0.374 |
|
| 2007 |
Arvand M, Feil EJ, Giladi M, Boulouis HJ, Viezens J. Multi-locus sequence typing of Bartonella henselae isolates from three continents reveals hypervirulent and feline-associated clones. Plos One. 2: e1346. PMID 18094753 DOI: 10.1371/journal.pone.0001346 |
0.355 |
|
| 2007 |
Balbi KJ, Feil EJ. The rise and fall of deleterious mutation. Research in Microbiology. 158: 779-86. PMID 17988836 DOI: 10.1016/j.resmic.2007.09.005 |
0.744 |
|
| 2007 |
Papke RT, Zhaxybayeva O, Feil EJ, Sommerfeld K, Muise D, Doolittle WF. Searching for species in haloarchaea. Proceedings of the National Academy of Sciences of the United States of America. 104: 14092-7. PMID 17715057 DOI: 10.1073/pnas.0706358104 |
0.305 |
|
| 2007 |
Cohen AL, Oliver JD, DePaola A, Feil EJ, Boyd EF. Emergence of a virulent clade of Vibrio vulnificus and correlation with the presence of a 33-kilobase genomic island. Applied and Environmental Microbiology. 73: 5553-65. PMID 17616611 DOI: 10.1128/Aem.00635-07 |
0.42 |
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| 2006 |
Vesaratchavest M, Tumapa S, Day NP, Wuthiekanun V, Chierakul W, Holden MT, White NJ, Currie BJ, Spratt BG, Feil EJ, Peacock SJ. Nonrandom distribution of Burkholderia pseudomallei clones in relation to geographical location and virulence. Journal of Clinical Microbiology. 44: 2553-7. PMID 16825379 DOI: 10.1128/JCM.00629-06 |
0.32 |
|
| 2006 |
Cooper JE, Feil EJ. The phylogeny of Staphylococcus aureus - which genes make the best intra-species markers? Microbiology (Reading, England). 152: 1297-305. PMID 16622047 DOI: 10.1099/mic.0.28620-0 |
0.372 |
|
| 2006 |
Rocha EP, Smith JM, Hurst LD, Holden MT, Cooper JE, Smith NH, Feil EJ. Comparisons of dN/dS are time dependent for closely related bacterial genomes. Journal of Theoretical Biology. 239: 226-35. PMID 16239014 DOI: 10.1016/j.jtbi.2005.08.037 |
0.36 |
|
| 2005 |
Robinson DA, Monk AB, Cooper JE, Feil EJ, Enright MC. Evolutionary genetics of the accessory gene regulator (agr) locus in Staphylococcus aureus. Journal of Bacteriology. 187: 8312-21. PMID 16321935 DOI: 10.1128/JB.187.24.8312-8321.2005 |
0.3 |
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| 2005 |
Gevers D, Cohan FM, Lawrence JG, Spratt BG, Coenye T, Feil EJ, Stackebrandt E, Van de Peer Y, Vandamme P, Thompson FL, Swings J. Opinion: Re-evaluating prokaryotic species. Nature Reviews. Microbiology. 3: 733-9. PMID 16138101 DOI: 10.1038/Nrmicro1236 |
0.341 |
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| 2005 |
Spratt BG, Hanage WP, Li B, Aanensen DM, Feil EJ. Displaying the relatedness among isolates of bacterial species -- the eBURST approach. Fems Microbiology Letters. 241: 129-34. PMID 15598523 DOI: 10.1016/j.femsle.2004.11.015 |
0.324 |
|
| 2004 |
Cooper JE, Feil EJ. Multilocus sequence typing--what is resolved? Trends in Microbiology. 12: 373-7. PMID 15276613 DOI: 10.1016/j.tim.2004.06.003 |
0.332 |
|
| 2004 |
Holden MT, Feil EJ, Lindsay JA, Peacock SJ, Day NP, Enright MC, Foster TJ, Moore CE, Hurst L, Atkin R, Barron A, Bason N, Bentley SD, Chillingworth C, Chillingworth T, et al. Complete genomes of two clinical Staphylococcus aureus strains: evidence for the rapid evolution of virulence and drug resistance. Proceedings of the National Academy of Sciences of the United States of America. 101: 9786-91. PMID 15213324 DOI: 10.1073/Pnas.0402521101 |
0.392 |
|
| 2004 |
Feil EJ, Enright MC. Analyses of clonality and the evolution of bacterial pathogens. Current Opinion in Microbiology. 7: 308-13. PMID 15196500 DOI: 10.1016/j.mib.2004.04.002 |
0.432 |
|
| 2003 |
Feil EJ, Cooper JE, Grundmann H, Robinson DA, Enright MC, Berendt T, Peacock SJ, Smith JM, Murphy M, Spratt BG, Moore CE, Day NP. How clonal is Staphylococcus aureus? Journal of Bacteriology. 185: 3307-16. PMID 12754228 DOI: 10.1128/JB.185.11.3307-3316.2003 |
0.464 |
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