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David L. Bain - Publications

Affiliations: 
University of Colorado Anschutz Medical Campus, Denver, Aurora, CO 
Area:
Pharmaceutical Chemistry, Biochemistry
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40 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Hudson WH, Vera IMS, Nwachukwu JC, Weikum ER, Herbst AG, Yang Q, Bain DL, Nettles KW, Kojetin DJ, Ortlund EA. Cryptic glucocorticoid receptor-binding sites pervade genomic NF-κB response elements. Nature Communications. 9: 1337. PMID 29626214 DOI: 10.1038/S41467-018-03780-1  0.496
2018 Hopkins MM, Lambert CM, Bee JS, Parupudi A, Bain DL. Determination of interaction parameters for reversibly self-associating antibodies: A comparative analysis. Journal of Pharmaceutical Sciences. PMID 29571738 DOI: 10.1016/J.Xphs.2018.03.011  0.318
2015 Bain DL, De Angelis RW, Connaghan KD, Yang Q, Degala GD, Lambert JR. Dissecting Steroid Receptor Function by Analytical Ultracentrifugation. Methods in Enzymology. 562: 363-89. PMID 26412661 DOI: 10.1016/Bs.Mie.2015.04.005  0.832
2015 De Angelis RW, Maluf NK, Yang Q, Lambert JR, Bain DL. Glucocorticoid Receptor-DNA Dissociation Kinetics Measured in Vitro Reveal Exchange on the Second Time Scale. Biochemistry. 54: 5306-14. PMID 26267475 DOI: 10.1016/J.Bpj.2014.11.445  0.552
2015 Zhao H, Ghirlando R, Alfonso C, Arisaka F, Attali I, Bain DL, Bakhtina MM, Becker DF, Bedwell GJ, Bekdemir A, Besong TM, Birck C, Brautigam CA, Brennerman W, Byron O, et al. A multilaboratory comparison of calibration accuracy and the performance of external references in analytical ultracentrifugation. Plos One. 10: e0126420. PMID 25997164 DOI: 10.1371/Journal.Pone.0126420  0.733
2015 De Angelis RW, Maluf NK, Yang Q, Lambert JR, Bain DL. Glucocorticoid Receptor-DNA Dissociation Kinetics Measured in Vitro Reveal Exchange on the Second Time Scale Biochemistry. 54: 5306-5314. DOI: 10.1021/acs.biochem.5b00693  0.334
2014 Connaghan KD, Yang Q, Miura MT, Moody AD, Bain DL. Homologous steroid receptors assemble at identical promoter architectures with unique energetics of cooperativity. Proteins. 82: 2078-87. PMID 24648119 DOI: 10.1002/Prot.24563  0.807
2014 Bain DL, Connaghan KD, Maluf NK, Yang Q, Miura MT, De Angelis RW, Degala GD, Lambert JR. Steroid receptor-DNA interactions: toward a quantitative connection between energetics and transcriptional regulation. Nucleic Acids Research. 42: 691-700. PMID 24064251 DOI: 10.1093/Nar/Gkt859  0.839
2013 De Angelis RW, Yang Q, Miura MT, Bain DL. Dissection of androgen receptor-promoter interactions: steroid receptors partition their interaction energetics in parallel with their phylogenetic divergence. Journal of Molecular Biology. 425: 4223-35. PMID 23917122 DOI: 10.1016/J.Jmb.2013.07.033  0.652
2013 Connaghan KD, Miura MT, Maluf NK, Lambert JR, Bain DL. Analysis of a glucocorticoid-estrogen receptor chimera reveals that dimerization energetics are under ionic control. Biophysical Chemistry. 172: 8-17. PMID 23333595 DOI: 10.1016/J.Bpc.2012.12.005  0.821
2012 Bain DL, Yang Q, Connaghan KD, Robblee JP, Miura MT, Degala GD, Lambert JR, Maluf NK. Glucocorticoid receptor-DNA interactions: binding energetics are the primary determinant of sequence-specific transcriptional activity. Journal of Molecular Biology. 422: 18-32. PMID 22698871 DOI: 10.1016/J.Jmb.2012.06.005  0.834
2012 Robblee JP, Miura MT, Bain DL. Glucocorticoid receptor-promoter interactions: energetic dissection suggests a framework for the specificity of steroid receptor-mediated gene regulation. Biochemistry. 51: 4463-72. PMID 22587663 DOI: 10.1021/Bi3003956  0.653
2012 Cochrane DR, Jacobsen BM, Connaghan KD, Howe EN, Bain DL, Richer JK. Progestin regulated miRNAs that mediate progesterone receptor action in breast cancer Molecular and Cellular Endocrinology. 355: 15-24. PMID 22330642 DOI: 10.1016/J.Mce.2011.12.020  0.758
2012 Moody AD, Miura MT, Connaghan KD, Bain DL. Thermodynamic dissection of estrogen receptor-promoter interactions reveals that steroid receptors differentially partition their self-association and promoter binding energetics. Biochemistry. 51: 739-49. PMID 22201220 DOI: 10.1021/Bi2017156  0.81
2012 Moody AD, Robblee JP, Bain DL. Dissecting the linkage between transcription factor self-assembly and site-specific DNA binding: the role of the analytical ultracentrifuge. Methods in Molecular Biology (Clifton, N.J.). 796: 187-204. PMID 22052491 DOI: 10.1007/978-1-61779-334-9_10  0.788
2012 Moody AD, Miura MT, Connaghan KD, Bain DL. Thermodynamic Dissection of Estrogen Receptor-Promoter Interactions Reveals that Steroid Receptor Family Members Differentially Partition their Binding Energetics Biophysical Journal. 102: 73a. DOI: 10.1016/J.Bpj.2011.11.425  0.812
2011 Connaghan KD, Moody AD, Robblee JP, Lambert JR, Bain DL. From steroid receptors to cytokines: the thermodynamics of self-associating systems. Biophysical Chemistry. 159: 24-32. PMID 21696881 DOI: 10.1016/J.Bpc.2011.04.013  0.76
2010 Connaghan KD, Heneghan AF, Miura MT, Bain DL. Na(+) and K(+) allosterically regulate cooperative DNA binding by the human progesterone receptor. Biochemistry. 49: 422-31. PMID 20000807 DOI: 10.1021/Bi901525M  0.815
2009 Connaghan-Jones KD, Bain DL. Using thermodynamics to understand progesterone receptor function: method and theory. Methods in Enzymology. 455: 41-70. PMID 19289202 DOI: 10.1016/S0076-6879(08)04202-X  0.602
2009 Connaghan KD, Heneghan AF, Miura MT, Bain DL. Transcriptional Activation by the Human Progesterone Receptor: Towards a Predictive Understanding Biophysical Journal. 96: 61a. DOI: 10.1016/J.Bpj.2008.12.213  0.83
2008 Connaghan-Jones KD, Moody AD, Bain DL. Quantitative DNase footprint titration: a tool for analyzing the energetics of protein-DNA interactions. Nature Protocols. 3: 900-14. PMID 18451798 DOI: 10.1038/Nprot.2008.53  0.785
2008 Connaghan-Jones KD, Heneghan AF, Miura MT, Bain DL. Thermodynamic dissection of progesterone receptor interactions at the mouse mammary tumor virus promoter: monomer binding and strong cooperativity dominate the assembly reaction. Journal of Molecular Biology. 377: 1144-60. PMID 18313072 DOI: 10.1016/J.Jmb.2008.01.052  0.644
2007 Heneghan AF, Connaghan-Jones KD, Miura MT, Bain DL. Coactivator assembly at the promoter: efficient recruitment of SRC2 is coupled to cooperative DNA binding by the progesterone receptor. Biochemistry. 46: 11023-32. PMID 17845055 DOI: 10.1021/Bi700850V  0.657
2007 Connaghan-Jones KD, Heneghan AF, Miura MT, Bain DL. Thermodynamic analysis of progesterone receptor-promoter interactions reveals a molecular model for isoform-specific function. Proceedings of the National Academy of Sciences of the United States of America. 104: 2187-92. PMID 17277083 DOI: 10.1073/Pnas.0608848104  0.592
2007 Bain DL, Heneghan AF, Connaghan-Jones KD, Miura MT. Nuclear receptor structure: implications for function. Annual Review of Physiology. 69: 201-20. PMID 17137423 DOI: 10.1146/Annurev.Physiol.69.031905.160308  0.599
2006 Connaghan-Jones KD, Heneghan AF, Miura MT, Bain DL. Hydrodynamic analysis of the human progesterone receptor A-isoform reveals that self-association occurs in the micromolar range. Biochemistry. 45: 12090-9. PMID 17002309 DOI: 10.1021/Bi0612317  0.466
2006 Heneghan AF, Connaghan-Jones KD, Miura MT, Bain DL. Cooperative DNA binding by the B-isoform of human progesterone receptor: thermodynamic analysis reveals strongly favorable and unfavorable contributions to assembly. Biochemistry. 45: 3285-96. PMID 16519523 DOI: 10.1021/Bi052046G  0.602
2005 Heneghan AF, Berton N, Miura MT, Bain DL. Self-association energetics of an intact, full-length nuclear receptor: the B-isoform of human progesterone receptor dimerizes in the micromolar range. Biochemistry. 44: 9528-37. PMID 15996107 DOI: 10.1021/Bi050609I  0.513
2003 Martin SL, Branciforte D, Keller D, Bain DL. Trimeric structure for an essential protein in L1 retrotransposition. Proceedings of the National Academy of Sciences of the United States of America. 100: 13815-20. PMID 14615577 DOI: 10.1073/Pnas.2336221100  0.328
2003 Takimoto GS, Tung L, Abdel-Hafiz H, Abel MG, Sartorius CA, Richer JK, Jacobsen BM, Bain DL, Horwitz KB. Functional properties of the N-terminal region of progesterone receptors and their mechanistic relationship to structure. The Journal of Steroid Biochemistry and Molecular Biology. 85: 209-19. PMID 12943706 DOI: 10.1016/S0960-0760(03)00197-3  0.507
2001 Bain DL, Franden MA, McManaman JL, Takimoto GS, Horwitz KB. The N-terminal region of human progesterone B-receptors: biophysical and biochemical comparison to A-receptors. The Journal of Biological Chemistry. 276: 23825-31. PMID 11328821 DOI: 10.1074/Jbc.M102611200  0.453
2001 Bain DL, Berton N, Ortega M, Baran J, Yang Q, Catalano CE. Biophysical Characterization of the DNA Binding Domain of gpNu1, a Viral DNA Packaging Protein Journal of Biological Chemistry. 276: 20175-20181. PMID 11279084 DOI: 10.1074/Jbc.M100517200  0.335
2000 Graham JD, Bain DL, Richer JK, Jackson TA, Tung L, Horwitz KB. Thoughts on tamoxifen resistant breast cancer. Are coregulators the answer or just a red herring? The Journal of Steroid Biochemistry and Molecular Biology. 74: 255-9. PMID 11162933 DOI: 10.1016/S0960-0760(00)00101-1  0.454
2000 Graham JD, Bain DL, Richer JK, Jackson TA, Tung L, Horwitz KB. Nuclear receptor conformation, coregulators, and tamoxifen-resistant breast cancer. Steroids. 65: 579-84. PMID 11108862 DOI: 10.1016/S0039-128X(00)00116-1  0.49
2000 Bain DL, Franden MA, McManaman JL, Takimoto GS, Horwitz KB. The N-terminal region of the human progesterone A-receptor. Structural analysis and the influence of the DNA binding domain. The Journal of Biological Chemistry. 275: 7313-20. PMID 10702302 DOI: 10.1074/Jbc.275.10.7313  0.466
1998 Bain DL, Ackers GK. A quantitative cryogenic gel-shift technique for analysis of protein-DNA binding. Analytical Biochemistry. 258: 240-5. PMID 9570836 DOI: 10.1006/Abio.1998.2626  0.41
1997 Jackson TA, Richer JK, Bain DL, Takimoto GS, Tung L, Horwitz KB. The partial agonist activity of antagonist-occupied steroid receptors is controlled by a novel hinge domain-binding coactivator L7/SPA and the corepressors N-CoR or SMRT. Molecular Endocrinology (Baltimore, Md.). 11: 693-705. PMID 9171233 DOI: 10.1210/Mend.11.6.0004  0.582
1996 Horwitz KB, Jackson TA, Bain DL, Richer JK, Takimoto GS, Tung L. Nuclear receptor coactivators and corepressors. Molecular Endocrinology (Baltimore, Md.). 10: 1167-77. PMID 9121485 DOI: 10.1210/Mend.10.10.9121485  0.61
1995 Bain DL, Ackers GK. Self-association and DNA binding of lambda cI repressor N-terminal domains reveal linkage between sequence-specific binding and the C-terminal cooperativity domain. Biochemistry. 33: 14679-89. PMID 7993896 DOI: 10.1021/Bi00253A005  0.398
1992 Koblan KS, Bain DL, Beckett D, Shea MA, Ackers GK. Analysis of site-specific interaction parameters in protein-DNA complexes Methods in Enzymology. 210: 405-425. PMID 1584044 DOI: 10.1016/0076-6879(92)10021-5  0.372
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