Gloria Fuentes - Publications

Affiliations: 
Bioinformatics Institute (A-STAR), Singapore 138671 
Area:
structural biology, computational biology, MD simulations, protein-protein docking

28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Ma W, Fuentes G, Shi X, Verma C, Radda GK, Han W. FoxO1 negatively regulates leptin-induced POMC transcription through its direct interaction with STAT3. The Biochemical Journal. 466: 291-8. PMID 25510553 DOI: 10.1042/Bj20141109  0.601
2015 Ng YZ, Kannan S, Lane DP, Fuentes G, Verma CS. mAb806 binding to epidermal growth factor receptor: a computational study. Proteins. 83: 153-68. PMID 25370927 DOI: 10.1002/Prot.24714  0.592
2014 Lukman S, Verma CS, Fuentes G. Exploiting protein intrinsic flexibility in drug design. Advances in Experimental Medicine and Biology. 805: 245-69. PMID 24446365 DOI: 10.1007/978-3-319-02970-2_11  0.649
2013 Pereira M, Verma CS, Fuentes G. Differences in the binding affinities of ErbB family: heterogeneity in the prediction of resistance mutants. Plos One. 8: e77054. PMID 24194858 DOI: 10.1371/Journal.Pone.0077054  0.608
2012 Zhou W, Motakis E, Fuentes G, Verma CS. Macrostate identification from biomolecular simulations through time series analysis. Journal of Chemical Information and Modeling. 52: 2319-24. PMID 22928709 DOI: 10.1021/Ci300341V  0.616
2012 Sonkaria S, Fuentes G, Verma C, Narang R, Khare V, Fischer A, Faivre D. Insight into the assembly properties and functional organisation of the magnetotactic bacterial actin-like homolog, MamK. Plos One. 7: e34189. PMID 22586444 DOI: 10.1371/Journal.Pone.0034189  0.597
2012 Rojas AM, Fuentes G, Rausell A, Valencia A. The Ras protein superfamily: evolutionary tree and role of conserved amino acids. The Journal of Cell Biology. 196: 189-201. PMID 22270915 DOI: 10.1083/Jcb.201103008  0.606
2011 Fuentes G, Scaltriti M, Baselga J, Verma CS. Synergy between trastuzumab and pertuzumab for human epidermal growth factor 2 (Her2) from colocalization: an in silico based mechanism. Breast Cancer Research : Bcr. 13: R54. PMID 21600050 DOI: 10.1186/Bcr2888  0.548
2011 Tan YS, Fuentes G, Verma C. A comparison of the dynamics of pantothenate synthetase from M. tuberculosis and E. coli: computational studies. Proteins. 79: 1715-27. PMID 21425349 DOI: 10.1002/Prot.22994  0.58
2011 Wass MN, Fuentes G, Pons C, Pazos F, Valencia A. Towards the prediction of protein interaction partners using physical docking. Molecular Systems Biology. 7: 469. PMID 21326236 DOI: 10.1038/Msb.2011.3  0.518
2011 Fuentes G, Dastidar SG, Madhumalar A, Verma CS. Role of protein flexibility in the discovery of new drugs Drug Development Research. 72: 26-35. DOI: 10.1002/Ddr.20399  0.635
2010 Mañes S, Fuentes G, Peregil RM, Rojas AM, Lacalle RA. An isoform-specific PDZ-binding motif targets type I PIP5 kinase beta to the uropod and controls polarization of neutrophil-like HL60 cells. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 24: 3381-92. PMID 20442317 DOI: 10.1096/Fj.09-153106  0.552
2009 Fuentes G, Valencia A. Ras classical effectors: new tales from in silico complexes. Trends in Biochemical Sciences. 34: 533-9. PMID 19801192 DOI: 10.1016/J.Tibs.2009.07.001  0.48
2009 Fuentes G, Oyarzabal J, Rojas AM. Databases of protein-protein interactions and their use in drug discovery. Current Opinion in Drug Discovery & Development. 12: 358-66. PMID 19396737  0.49
2009 Repanas K, Fuentes G, Cohen SX, Bonvin AM, Perrakis A. Insights into the DNA cleavage mechanism of human LINE-1 retrotransposon endonuclease. Proteins. 74: 917-28. PMID 18767160 DOI: 10.1002/Prot.22201  0.545
2009 Krzeminski M, Fuentes G, Boelens R, Bonvin AM. MINOES: a new approach to select a representative ensemble of structures in NMR studies of (partially) unfolded states. Application to Delta25-PYP. Proteins. 74: 895-904. PMID 18704926 DOI: 10.1002/Prot.22197  0.728
2009 Dastidar SG, Madhumalar A, Fuentes G, Lane DP, Verma CS. Forces mediating protein–protein interactions: a computational study of p53 “approaching” MDM2 Theoretical Chemistry Accounts. 125: 621-635. DOI: 10.1007/S00214-009-0682-1  0.609
2008 Fuentes G, van Dijk AD, Bonvin AM. Nuclear magnetic resonance-based modeling and refinement of protein three-dimensional structures and their complexes. Methods in Molecular Biology (Clifton, N.J.). 443: 229-55. PMID 18446291 DOI: 10.1007/978-1-59745-177-2_13  0.56
2007 Fuentes G, Ballesteros A, Verma CS. Enthalpic and entropic contributions in the transesterification of sucrose: computational study of lipases and subtilisin. Journal of Biomolecular Structure & Dynamics. 25: 145-55. PMID 17718593 DOI: 10.1080/07391102.2007.10507163  0.692
2007 Rapp CS, Strauss T, Nederveen A, Fuentes G. Prediction of protein loop geometries in solution. Proteins. 69: 69-74. PMID 17588228 DOI: 10.1002/Prot.21503  0.355
2006 Langedijk JP, Fuentes G, Boshuizen R, Bonvin AM. Two-rung model of a left-handed beta-helix for prions explains species barrier and strain variation in transmissible spongiform encephalopathies. Journal of Molecular Biology. 360: 907-20. PMID 16782127 DOI: 10.1016/J.Jmb.2006.05.042  0.512
2005 Fuentes G, Nederveen AJ, Kaptein R, Boelens R, Bonvin AM. Describing partially unfolded states of proteins from sparse NMR data. Journal of Biomolecular Nmr. 33: 175-86. PMID 16331422 DOI: 10.1007/S10858-005-3207-9  0.691
2004 Fuentes G, Ballesteros A, Verma CS. Specificity in lipases: a computational study of transesterification of sucrose. Protein Science : a Publication of the Protein Society. 13: 3092-103. PMID 15557256 DOI: 10.1110/Ps.04724504  0.698
2002 Fuentes G, Cruces MA, Plou FJ, Ballesteros A, Verma CS. Computational studies of subtilisin-catalyzed transesterification of sucrose: importance of entropic effects. Chembiochem : a European Journal of Chemical Biology. 3: 907-10. PMID 12210994 DOI: 10.1002/1439-7633(20020902)3:9<907::Aid-Cbic907>3.0.Co;2-6  0.648
2002 Plou FJ, Cruces MA, Ferrer M, Fuentes G, Pastor E, Bernabé M, Christensen M, Comelles F, Parra JL, Ballesteros A. Enzymatic acylation of di- and trisaccharides with fatty acids: choosing the appropriate enzyme, support and solvent. Journal of Biotechnology. 96: 55-66. PMID 12142143 DOI: 10.1016/S0168-1656(02)00037-8  0.52
2002 Ferrer M, Plou FJ, Fuentes G, Cruces MA, Andersen L, Kirk O, Christensen M, Ballesteros A. Effect of the Immobilization Method of Lipase from Thermomyces lanuginosus on Sucrose Acylation Biocatalysis and Biotransformation. 20: 63-71. DOI: 10.1080/10242420210153  0.492
2002 Ferrer M, Comelles F, Plou FJ, Cruces MA, Fuentes G, Parra JL, Ballesteros A. Comparative surface activities of Di- and trisaccharide fatty acid esters Langmuir. 18: 667-673. DOI: 10.1021/La010727G  0.48
2000 Ferrer M, Cruces MA, Plou FJ, Pastor E, Fuentes G, Bernabé M, Parra JL, Ballesteros A. Chemical versus enzymatic catalysis for the regioselective synthesis of sucrose esters of fatty acids Studies in Surface Science and Catalysis. 130: 509-514. DOI: 10.1016/S0167-2991(00)81008-3  0.503
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