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Carles Pons - Publications

Affiliations: 
2005-2011 Barcelona Supercomputing Center, Barcelona, Catalunya, Spain 
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32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Costanzo M, Hou J, Messier V, Nelson J, Rahman M, VanderSluis B, Wang W, Pons C, Ross C, Ušaj M, San Luis BJ, Shuteriqi E, Koch EN, Aloy P, Myers CL, et al. Environmental robustness of the global yeast genetic interaction network. Science (New York, N.Y.). 372. PMID 33958448 DOI: 10.1126/science.abf8424  0.761
2021 Meldal BHM, Pons C, Perfetto L, Del-Toro N, Wong E, Aloy P, Hermjakob H, Orchard S, Porras P. Analysing the yeast complexome-the Complex Portal rising to the challenge. Nucleic Acids Research. PMID 33677561 DOI: 10.1093/nar/gkab077  0.321
2020 van Leeuwen J, Pons C, Tan G, Wang JZ, Hou J, Weile J, Gebbia M, Liang W, Shuteriqi E, Li Z, Lopes M, Ušaj M, Dos Santos Lopes A, van Lieshout N, Myers CL, et al. Systematic analysis of bypass suppression of essential genes. Molecular Systems Biology. 16: e9828. PMID 32939983 DOI: 10.15252/Msb.20209828  0.59
2020 Luck K, Kim DK, Lambourne L, Spirohn K, Begg BE, Bian W, Brignall R, Cafarelli T, Campos-Laborie FJ, Charloteaux B, Choi D, Coté AG, Daley M, Deimling S, Desbuleux A, ... ... Pons C, et al. A reference map of the human binary protein interactome. Nature. 580: 402-408. PMID 32296183 DOI: 10.1038/S41586-020-2188-X  0.392
2018 Kuzmin E, VanderSluis B, Wang W, Tan G, Deshpande R, Chen Y, Usaj M, Balint A, Mattiazzi Usaj M, van Leeuwen J, Koch EN, Pons C, Dagilis AJ, Pryszlak M, Wang JZY, et al. Systematic analysis of complex genetic interactions. Science (New York, N.Y.). 360. PMID 29674565 DOI: 10.1126/Science.Aao1729  0.779
2017 Rizzolo K, Huen J, Kumar A, Phanse S, Vlasblom J, Kakihara Y, Zeineddine HA, Minic Z, Snider J, Wang W, Pons C, Seraphim TV, Boczek EE, Alberti S, Costanzo M, et al. Features of the Chaperone Cellular Network Revealed through Systematic Interaction Mapping. Cell Reports. 20: 2735-2748. PMID 28903051 DOI: 10.1016/J.Celrep.2017.08.074  0.699
2016 van Leeuwen J, Pons C, Mellor JC, Yamaguchi TN, Friesen H, Koschwanez J, Ušaj MM, Pechlaner M, Takar M, Ušaj M, VanderSluis B, Andrusiak K, Bansal P, Baryshnikova A, Boone CE, et al. Exploring genetic suppression interactions on a global scale. Science (New York, N.Y.). 354. PMID 27811238 DOI: 10.1126/Science.Aag0839  0.79
2016 Fuxman Bass JI, Pons C, Kozlowski L, Reece-Hoyes JS, Shrestha S, Holdorf AD, Mori A, Myers CL, Walhout AJ. A gene-centered C. elegans protein-DNA interaction network provides a framework for functional predictions. Molecular Systems Biology. 12: 884. PMID 27777270 DOI: 10.15252/msb.20167131  0.636
2016 Costanzo M, VanderSluis B, Koch EN, Baryshnikova A, Pons C, Tan G, Wang W, Usaj M, Hanchard J, Lee SD, Pelechano V, Styles EB, Billmann M, van Leeuwen J, van Dyk N, et al. A global genetic interaction network maps a wiring diagram of cellular function. Science (New York, N.Y.). 353. PMID 27708008 DOI: 10.1126/Science.Aaf1420  0.711
2015 Becker JR, Pons C, Nguyen HD, Costanzo M, Boone C, Myers CL, Bielinsky AK. Genetic Interactions Implicating Postreplicative Repair in Okazaki Fragment Processing. Plos Genetics. 11: e1005659. PMID 26545110 DOI: 10.1371/Journal.Pgen.1005659  0.508
2015 MacNeil LT, Pons C, Arda HE, Giese GE, Myers CL, Walhout AJ. Transcription Factor Activity Mapping of a Tissue-Specific in vivo Gene Regulatory Network. Cell Systems. 1: 152-162. PMID 26430702 DOI: 10.1016/j.cels.2015.08.003  0.6
2015 Jiménez-García B, Pons C, Svergun DI, Bernadó P, Fernández-Recio J. pyDockSAXS: protein-protein complex structure by SAXS and computational docking. Nucleic Acids Research. 43: W356-61. PMID 25897115 DOI: 10.1093/Nar/Gkv368  0.524
2014 DiPrima S, Haarer B, Viggiano S, Pons C, Myers CL, Amberg DC. Linking genetics to structural biology: complex heterozygosity screening with actin alanine scan alleles identifies functionally related surfaces on yeast actin. G3 (Bethesda, Md.). 4: 1491-501. PMID 24938290 DOI: 10.1534/G3.114.012054  0.593
2013 Emperador A, Solernou A, Sfriso P, Pons C, Gelpi JL, Fernandez-Recio J, Orozco M. Efficient Relaxation of Protein-Protein Interfaces by Discrete Molecular Dynamics Simulations. Journal of Chemical Theory and Computation. 9: 1222-9. PMID 26588765 DOI: 10.1021/ct301039e  0.815
2013 Pons C, Fenwick RB, Esteban-Martín S, Salvatella X, Fernandez-Recio J. Validated Conformational Ensembles Are Key for the Successful Prediction of Protein Complexes. Journal of Chemical Theory and Computation. 9: 1830-7. PMID 26587639 DOI: 10.1021/ct300990h  0.661
2013 Pallara C, Jiménez-García B, Pérez-Cano L, Romero-Durana M, Solernou A, Grosdidier S, Pons C, Moal IH, Fernandez-Recio J. Expanding the frontiers of protein-protein modeling: from docking and scoring to binding affinity predictions and other challenges. Proteins. 81: 2192-200. PMID 23934865 DOI: 10.1002/prot.24387  0.705
2013 Reece-Hoyes JS, Pons C, Diallo A, Mori A, Shrestha S, Kadreppa S, Nelson J, Diprima S, Dricot A, Lajoie BR, Ribeiro PS, Weirauch MT, Hill DE, Hughes TR, Myers CL, et al. Extensive rewiring and complex evolutionary dynamics in a C. elegans multiparameter transcription factor network. Molecular Cell. 51: 116-27. PMID 23791784 DOI: 10.1016/j.molcel.2013.05.018  0.752
2013 Jiménez-García B, Pons C, Fernández-Recio J. pyDockWEB: a web server for rigid-body protein-protein docking using electrostatics and desolvation scoring. Bioinformatics (Oxford, England). 29: 1698-9. PMID 23661696 DOI: 10.1093/bioinformatics/btt262  0.651
2013 Pérez-Cano L, Solernou A, Pons C, Fernández-Recio J. Structural prediction of protein-RNA interaction by computational docking with propensity-based statistical potentials. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 293-301. PMID 19908381 DOI: 10.1142/9789814295291_0031  0.775
2012 Pons C, Jiménez-González D, González-Álvarez C, Servat H, Cabrera-Benítez D, Aguilar X, Fernández-Recio J. Cell-Dock: high-performance protein-protein docking. Bioinformatics (Oxford, England). 28: 2394-6. PMID 22815362 DOI: 10.1093/bioinformatics/bts454  0.583
2011 Fleishman SJ, Whitehead TA, Strauch EM, Corn JE, Qin S, Zhou HX, Mitchell JC, Demerdash ON, Takeda-Shitaka M, Terashi G, Moal IH, Li X, Bates PA, Zacharias M, Park H, ... ... Pons C, et al. Community-wide assessment of protein-interface modeling suggests improvements to design methodology. Journal of Molecular Biology. 414: 289-302. PMID 22001016 DOI: 10.1016/J.Jmb.2011.09.031  0.782
2011 Pons C, Glaser F, Fernandez-Recio J. Prediction of protein-binding areas by small-world residue networks and application to docking. Bmc Bioinformatics. 12: 378. PMID 21943333 DOI: 10.1186/1471-2105-12-378  0.701
2011 Wass MN, Fuentes G, Pons C, Pazos F, Valencia A. Towards the prediction of protein interaction partners using physical docking. Molecular Systems Biology. 7: 469. PMID 21326236 DOI: 10.1038/Msb.2011.3  0.462
2011 Pons C, Talavera D, de la Cruz X, Orozco M, Fernandez-Recio J. Scoring by intermolecular pairwise propensities of exposed residues (SIPPER): a new efficient potential for protein-protein docking. Journal of Chemical Information and Modeling. 51: 370-7. PMID 21214199 DOI: 10.1021/Ci100353E  0.66
2011 Pons C, Solernou A, Perez-Cano L, Grosdidier S, Fernandez-Recio J. Optimization of pyDock for the new CAPRI challenges: Docking of homology-based models, domain-domain assembly and protein-RNA binding. Proteins. 78: 3182-8. PMID 20602351 DOI: 10.1002/prot.22773  0.747
2010 Pons C, D'Abramo M, Svergun DI, Orozco M, Bernadó P, Fernández-Recio J. Structural characterization of protein-protein complexes by integrating computational docking with small-angle scattering data. Journal of Molecular Biology. 403: 217-30. PMID 20804770 DOI: 10.1016/J.Jmb.2010.08.029  0.633
2010 Pons C, Grosdidier S, Solernou A, Pérez-Cano L, Fernández-Recio J. Present and future challenges and limitations in protein-protein docking. Proteins. 78: 95-108. PMID 19731373 DOI: 10.1002/prot.22564  0.782
2009 Mosca R, Pons C, Fernández-Recio J, Aloy P. Pushing structural information into the yeast interactome by high-throughput protein docking experiments. Plos Computational Biology. 5: e1000490. PMID 19714207 DOI: 10.1371/Journal.Pcbi.1000490  0.68
2009 Garzon JI, Lopéz-Blanco JR, Pons C, Kovacs J, Abagyan R, Fernandez-Recio J, Chacon P. FRODOCK: a new approach for fast rotational protein-protein docking. Bioinformatics (Oxford, England). 25: 2544-51. PMID 19620099 DOI: 10.1093/Bioinformatics/Btp447  0.734
2008 Izarzugaza JM, Juan D, Pons C, Pazos F, Valencia A. Enhancing the prediction of protein pairings between interacting families using orthology information. Bmc Bioinformatics. 9: 35. PMID 18215279 DOI: 10.1186/1471-2105-9-35  0.332
2008 Grosdidier S, Pons C, Solernou A, Fernández-Recio J. Prediction and scoring of docking poses with pyDock. Proteins. 69: 852-8. PMID 17876821 DOI: 10.1002/prot.21796  0.757
2006 Izarzugaza JM, Juan D, Pons C, Ranea JA, Valencia A, Pazos F. TSEMA: interactive prediction of protein pairings between interacting families. Nucleic Acids Research. 34: W315-9. PMID 16845017 DOI: 10.1093/Nar/Gkl112  0.326
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