| Year |
Citation |
Score |
| 2022 |
Kettenburg G, Kistler A, Ranaivoson HC, Ahyong V, Andrianiaina A, Andry S, DeRisi JL, Gentles A, Raharinosy V, Randriambolamanantsoa TH, Ravelomanantsoa NAF, Tato CM, Dussart P, Heraud JM, Brook CE. Full Genome Sequences From Malagasy Fruit Bats Define a Unique Evolutionary History for This Coronavirus Clade. Frontiers in Public Health. 10: 786060. PMID 35223729 DOI: 10.3389/fpubh.2022.786060 |
0.309 |
|
| 2021 |
Gu W, Talevich E, Hsu E, Qi Z, Urisman A, Federman S, Gopez A, Arevalo S, Gottschall M, Liao L, Tung J, Chen L, Lim H, Ho C, Kasowski M, ... ... DeRisi JL, et al. Detection of cryptogenic malignancies from metagenomic whole genome sequencing of body fluids. Genome Medicine. 13: 98. PMID 34074327 DOI: 10.1186/s13073-021-00912-z |
0.63 |
|
| 2019 |
DeRisi JL, Huber G, Kistler A, Retallack H, Wilkinson M, Yllanes D. An exploration of ambigrammatic sequences in narnaviruses. Scientific Reports. 9: 17982. PMID 31784609 DOI: 10.1038/S41598-019-54181-3 |
0.537 |
|
| 2017 |
Hanna ZR, Henderson JB, Wall JD, Emerling CA, Fuchs J, Runckel C, Mindell DP, Bowie RCK, DeRisi JL, Dumbacher JP. Northern Spotted Owl (Strix occidentalis caurina) Genome: Divergence with the Barred Owl (Strix varia) and Characterization of Light-Associated Genes. Genome Biology and Evolution. 9: 2522-2545. PMID 28992302 DOI: 10.1093/Gbe/Evx158 |
0.795 |
|
| 2017 |
Sonoiki E, Ng CL, Lee MC, Guo D, Zhang YK, Zhou Y, Alley MR, Ahyong V, Sanz LM, Lafuente-Monasterio MJ, Dong C, Schupp PG, Gut J, Legac J, Cooper RA, ... ... DeRisi J, et al. A potent antimalarial benzoxaborole targets a Plasmodium falciparum cleavage and polyadenylation specificity factor homologue. Nature Communications. 8: 14574. PMID 28262680 DOI: 10.1038/Ncomms14574 |
0.313 |
|
| 2017 |
Medina GN, Knudsen GM, Greninger AL, Kloc A, Díaz-San Segundo F, Rieder E, Grubman MJ, DeRisi JL, de Los Santos T. Interaction between FMDV L(pro) and transcription factor ADNP is required for optimal viral replication. Virology. 505: 12-22. PMID 28219017 DOI: 10.1016/J.Virol.2017.02.010 |
0.456 |
|
| 2017 |
Slabodnick MM, Ruby JG, Reiff SB, Swart EC, Gosai S, Prabakaran S, Witkowska E, Larue GE, Fisher S, Freeman RM, Gunawardena J, Chu W, Stover NA, Gregory BD, Nowacki M, ... Derisi J, et al. The Macronuclear Genome of Stentor coeruleus Reveals Tiny Introns in a Giant Cell. Current Biology : Cb. PMID 28190732 DOI: 10.1016/J.Cub.2016.12.057 |
0.362 |
|
| 2016 |
Greene TT, Tokuyama M, Knudsen GM, Kunz M, Lin J, Greninger AL, DeFilippis VR, DeRisi JL, Raulet DH, Coscoy L. A Herpesviral induction of RAE-1 NKG2D ligand expression occurs through release of HDAC mediated repression. Elife. 5. PMID 27874833 DOI: 10.7554/Elife.14749 |
0.421 |
|
| 2016 |
Sonoiki E, Nsanzabana C, Legac J, Sindhe KM, DeRisi J, Rosenthal PJ. Altered Plasmodium falciparum sensitivity to the antiretroviral protease inhibitor lopinavir associated with polymorphisms in pfmdr1. Antimicrobial Agents and Chemotherapy. PMID 27821443 DOI: 10.1128/Aac.01949-16 |
0.304 |
|
| 2016 |
Van Voorhis WC, Adams JH, Adelfio R, Ahyong V, Akabas MH, Alano P, Alday A, Alemán Resto Y, Alsibaee A, Alzualde A, Andrews KT, Avery SV, Avery VM, Ayong L, Baker M, ... ... DeRisi JL, et al. Open Source Drug Discovery with the Malaria Box Compound Collection for Neglected Diseases and Beyond. Plos Pathogens. 12: e1005763. PMID 27467575 DOI: 10.1371/Journal.Ppat.1005763 |
0.622 |
|
| 2016 |
Sonoiki E, Palencia A, Guo D, Ahyong V, Dong C, Li X, Hernandez VS, Zhang YK, Choi W, Gut J, Legac J, Cooper R, Alley MR, Freund YR, DeRisi J, et al. Anti-malarial benzoxaboroles target P. falciparum leucyl-tRNA synthetase. Antimicrobial Agents and Chemotherapy. PMID 27270277 DOI: 10.1128/Aac.00820-16 |
0.324 |
|
| 2015 |
Soupene E, Kao J, Cheng DH, Wang D, Greninger AL, Knudsen GM, DeRisi JL, Kuypers FA. Association of NMT2 with the acyl-CoA carrier ACBD6 protects the N-myristoyltransferase reaction from palmitoyl-CoA. Journal of Lipid Research. PMID 26621918 DOI: 10.1194/Jlr.M065003 |
0.389 |
|
| 2015 |
Hanna ZR, Runckel C, Fuchs J, DeRisi JL, Mindell DP, Van Hemert C, Handel CM, Dumbacher JP. Isolation of a Complete Circular Virus Genome Sequence from an Alaskan Black-Capped Chickadee (Poecile atricapillus) Gastrointestinal Tract Sample. Genome Announcements. 3. PMID 26404604 DOI: 10.1128/Genomea.01081-15 |
0.799 |
|
| 2015 |
Greninger AL, DeRisi JL. Draft Genome Sequence of Laverivirus UC1, a Dicistrovirus-Like RNA Virus Featuring an Unusual Genome Organization. Genome Announcements. 3. PMID 26139710 DOI: 10.1128/Genomea.00656-15 |
0.52 |
|
| 2015 |
Greninger AL, DeRisi JL. Draft Genome Sequence of Tombunodavirus UC1. Genome Announcements. 3. PMID 26139709 DOI: 10.1128/Genomea.00655-15 |
0.513 |
|
| 2015 |
Greninger AL, DeRisi JL. Draft Genome Sequence of Picalivirus D Recovered from San Francisco Wastewater. Genome Announcements. 3. PMID 26139708 DOI: 10.1128/Genomea.00654-15 |
0.495 |
|
| 2015 |
Greninger AL, DeRisi JL. Draft Genome Sequences of Leviviridae RNA Phages EC and MB Recovered from San Francisco Wastewater. Genome Announcements. 3. PMID 26112785 DOI: 10.1128/Genomea.00652-15 |
0.521 |
|
| 2015 |
Greninger AL, DeRisi JL. Draft Genome Sequences of Ciliovirus and Brinovirus from San Francisco Wastewater. Genome Announcements. 3. PMID 26112784 DOI: 10.1128/Genomea.00651-15 |
0.527 |
|
| 2015 |
Greninger AL, DeRisi JL. Draft Genome Sequences of Marine RNA Viruses SF-1, SF-2, and SF-3 Recovered from San Francisco Wastewater. Genome Announcements. 3. PMID 26089423 DOI: 10.1128/Genomea.00653-15 |
0.514 |
|
| 2015 |
Gerver RE, Gómez-Sjöberg R, Baxter BC, Thorn KS, Fordyce PM, Diaz-Botia CA, Helms BA, DeRisi JL. Correction: Programmable microfluidic synthesis of spectrally encoded microspheres. Lab On a Chip. 15: 1213. PMID 26038840 DOI: 10.1039/c5lc90018b |
0.554 |
|
| 2015 |
Gerver RE, Gómez-Sjöberg R, Baxter BC, Thorn KS, Fordyce PM, Diaz-Botia CA, Helms BA, DeRisi JL. Correction: Programmable microfluidic synthesis of spectrally encoded microspheres. Lab On a Chip. 15: 1213. PMID 25619960 DOI: 10.1039/C5Lc90018B |
0.546 |
|
| 2014 |
Jiménez-Díaz MB, Ebert D, Salinas Y, Pradhan A, Lehane AM, Myrand-Lapierre ME, O'Loughlin KG, Shackleford DM, Justino de Almeida M, Carrillo AK, Clark JA, Dennis AS, Diep J, Deng X, Duffy S, ... ... DeRisi JL, et al. (+)-SJ733, a clinical candidate for malaria that acts through ATP4 to induce rapid host-mediated clearance of Plasmodium. Proceedings of the National Academy of Sciences of the United States of America. 111: E5455-62. PMID 25453091 DOI: 10.1073/Pnas.1414221111 |
0.451 |
|
| 2014 |
Skewes-Cox P, Sharpton TJ, Pollard KS, DeRisi JL. Profile hidden Markov models for the detection of viruses within metagenomic sequence data. Plos One. 9: e105067. PMID 25140992 DOI: 10.1371/Journal.Pone.0105067 |
0.312 |
|
| 2014 |
Li R, Faden DL, Fakhry C, Langelier C, Jiao Y, Wang Y, Wilkerson MD, Pedamallu CS, Old M, Lang J, Loyo M, Ahn SM, Tan M, Gooi Z, Chan J, ... ... DeRisi JL, et al. Clinical, genomic, and metagenomic characterization of oral tongue squamous cell carcinoma in patients who do not smoke. Head & Neck. PMID 24954188 DOI: 10.1002/Hed.23807 |
0.351 |
|
| 2014 |
Naccache SN, Federman S, Veeraraghavan N, Zaharia M, Lee D, Samayoa E, Bouquet J, Greninger AL, Luk KC, Enge B, Wadford DA, Messenger SL, Genrich GL, Pellegrino K, Grard G, ... ... DeRisi JL, et al. A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples. Genome Research. 24: 1180-92. PMID 24899342 DOI: 10.1101/Gr.171934.113 |
0.475 |
|
| 2014 |
Pérez JC, Fordyce PM, Lohse MB, Hanson-Smith V, DeRisi JL, Johnson AD. How duplicated transcription regulators can diversify to govern the expression of nonoverlapping sets of genes. Genes & Development. 28: 1272-7. PMID 24874988 DOI: 10.1101/Gad.242271.114 |
0.628 |
|
| 2014 |
Runckel C, DeRisi J, Flenniken ML. A draft genome of the honey bee trypanosomatid parasite Crithidia mellificae. Plos One. 9: e95057. PMID 24743507 DOI: 10.1371/Journal.Pone.0095057 |
0.794 |
|
| 2014 |
Szentiks CA, Tsangaras K, Abendroth B, Scheuch M, Stenglein MD, Wohlsein P, Heeger F, Höveler R, Chen W, Sun W, Damiani A, Nikolin V, Gruber AD, Grobbel M, Kalthoff D, ... ... Derisi J, et al. Polar bear encephalitis: establishment of a comprehensive next-generation pathogen analysis pipeline for captive and free-living wildlife. Journal of Comparative Pathology. 150: 474-88. PMID 24534459 DOI: 10.1016/J.Jcpa.2013.12.005 |
0.331 |
|
| 2013 |
Stewart-Ornstein J, Nelson C, DeRisi J, Weissman JS, El-Samad H. Msn2 coordinates a stoichiometric gene expression program. Current Biology : Cb. 23: 2336-45. PMID 24210615 DOI: 10.1016/J.Cub.2013.09.043 |
0.354 |
|
| 2013 |
Hernday AD, Lohse MB, Fordyce PM, Nobile CJ, DeRisi JL, Johnson AD. Structure of the transcriptional network controlling white-opaque switching in Candida albicans. Molecular Microbiology. 90: 22-35. PMID 23855748 DOI: 10.1111/Mmi.12329 |
0.604 |
|
| 2013 |
Guler JL, Freeman DL, Ahyong V, Patrapuvich R, White J, Gujjar R, Phillips MA, DeRisi J, Rathod PK. Asexual populations of the human malaria parasite, Plasmodium falciparum, use a two-step genomic strategy to acquire accurate, beneficial DNA amplifications. Plos Pathogens. 9: e1003375. PMID 23717205 DOI: 10.1371/Journal.Ppat.1003375 |
0.354 |
|
| 2013 |
Nelson CS, Fuller CK, Fordyce PM, Greninger AL, Li H, DeRisi JL. Microfluidic affinity and ChIP-seq analyses converge on a conserved FOXP2-binding motif in chimp and human, which enables the detection of evolutionarily novel targets. Nucleic Acids Research. 41: 5991-6004. PMID 23625967 DOI: 10.1093/Nar/Gkt259 |
0.678 |
|
| 2013 |
Lohse MB, Hernday AD, Fordyce PM, Noiman L, Sorrells TR, Hanson-Smith V, Nobile CJ, DeRisi JL, Johnson AD. Identification and characterization of a previously undescribed family of sequence-specific DNA-binding domains. Proceedings of the National Academy of Sciences of the United States of America. 110: 7660-5. PMID 23610392 DOI: 10.1073/Pnas.1221734110 |
0.65 |
|
| 2013 |
Greninger AL, Knudsen GM, Betegon M, Burlingame AL, DeRisi JL. ACBD3 interaction with TBC1 domain 22 protein is differentially affected by enteroviral and kobuviral 3A protein binding. Mbio. 4: e00098-13. PMID 23572552 DOI: 10.1128/Mbio.00098-13 |
0.437 |
|
| 2013 |
Runckel C, Westesson O, Andino R, DeRisi JL. Identification and manipulation of the molecular determinants influencing poliovirus recombination. Plos Pathogens. 9: e1003164. PMID 23408891 DOI: 10.1371/Journal.Ppat.1003164 |
0.799 |
|
| 2012 |
Yu G, Greninger AL, Isa P, Phan TG, MartÃnez MA, de la Luz Sanchez M, Contreras JF, Santos-Preciado JI, Parsonnet J, Miller S, DeRisi JL, Delwart E, Arias CF, Chiu CY. Discovery of a novel polyomavirus in acute diarrheal samples from children. Plos One. 7: e49449. PMID 23166671 DOI: 10.1371/Journal.Pone.0049449 |
0.5 |
|
| 2012 |
Fordyce PM, Pincus D, Kimmig P, Nelson CS, El-Samad H, Walter P, DeRisi JL. Basic leucine zipper transcription factor Hac1 binds DNA in two distinct modes as revealed by microfluidic analyses. Proceedings of the National Academy of Sciences of the United States of America. 109: E3084-93. PMID 23054834 DOI: 10.1073/Pnas.1212457109 |
0.627 |
|
| 2012 |
Gerver RE, Gómez-Sjöberg R, Baxter BC, Thorn KS, Fordyce PM, Diaz-Botia CA, Helms BA, DeRisi JL. Programmable microfluidic synthesis of spectrally encoded microspheres. Lab On a Chip. 12: 4716-23. PMID 23042484 DOI: 10.1039/C2Lc40699C |
0.584 |
|
| 2012 |
Lee D, Das Gupta J, Gaughan C, Steffen I, Tang N, Luk KC, Qiu X, Urisman A, Fischer N, Molinaro R, Broz M, Schochetman G, Klein EA, Ganem D, Derisi JL, et al. In-depth investigation of archival and prospectively collected samples reveals no evidence for XMRV infection in prostate cancer. Plos One. 7: e44954. PMID 23028701 DOI: 10.1371/Journal.Pone.0044954 |
0.601 |
|
| 2012 |
Urisman A, Molinaro RJ, Fischer N, Plummer SJ, Casey G, Klein EA, Malathi K, Magi-Galluzzi C, Tubbs RR, Ganem D, Silverman RH, DeRisi JL. Retraction. Identification of a novel gammaretrovirus in prostate tumors of patients homozygous for R462Q RNASEL variant. Plos Pathogens. 8. PMID 23028303 DOI: 10.1371/annotation/7e2efc01-2e9b-4e9b-aef0-87ab0e4e4732 |
0.557 |
|
| 2012 |
O'Donoghue AJ, Eroy-Reveles AA, Knudsen GM, Ingram J, Zhou M, Statnekov JB, Greninger AL, Hostetter DR, Qu G, Maltby DA, Anderson MO, Derisi JL, McKerrow JH, Burlingame AL, Craik CS. Global identification of peptidase specificity by multiplex substrate profiling. Nature Methods. 9: 1095-100. PMID 23023596 DOI: 10.1038/Nmeth.2182 |
0.453 |
|
| 2012 |
Fordyce PM, Diaz-Botia CA, DeRisi JL, Gomez-Sjoberg R. Systematic characterization of feature dimensions and closing pressures for microfluidic valves produced via photoresist reflow. Lab On a Chip. 12: 4287-95. PMID 22930180 DOI: 10.1039/c2lc40414a |
0.55 |
|
| 2012 |
Lowes D, Pradhan A, Iyer LV, Parman T, Gow J, Zhu F, Furimsky A, Lemoff A, Guiguemde WA, Sigal M, Clark JA, Wilson E, Tang L, Connelly MC, Derisi JL, et al. Lead optimization of antimalarial propafenone analogues. Journal of Medicinal Chemistry. 55: 6087-93. PMID 22708838 DOI: 10.1021/Jm300286A |
0.401 |
|
| 2012 |
Greninger AL, Knudsen GM, Betegon M, Burlingame AL, Derisi JL. The 3A protein from multiple picornaviruses utilizes the golgi adaptor protein ACBD3 to recruit PI4KIIIβ. Journal of Virology. 86: 3605-16. PMID 22258260 DOI: 10.1128/Jvi.06778-11 |
0.417 |
|
| 2012 |
Core A, Runckel C, Ivers J, Quock C, Siapno T, Denault S, Brown B, Derisi J, Smith CD, Hafernik J. A new threat to honey bees, the parasitic phorid fly Apocephalus borealis. Plos One. 7: e29639. PMID 22235317 DOI: 10.1371/Journal.Pone.0029639 |
0.772 |
|
| 2011 |
Anderson CM, Chen SY, Dimon MT, Oke A, DeRisi JL, Fung JC. ReCombine: a suite of programs for detection and analysis of meiotic recombination in whole-genome datasets. Plos One. 6: e25509. PMID 22046241 DOI: 10.1371/Journal.Pone.0025509 |
0.645 |
|
| 2011 |
Lowes DJ, Guiguemde WA, Connelly MC, Zhu F, Sigal MS, Clark JA, Lemoff AS, Derisi JL, Wilson EB, Guy RK. Optimization of propafenone analogues as antimalarial leads. Journal of Medicinal Chemistry. 54: 7477-85. PMID 21955244 DOI: 10.1021/Jm2005546 |
0.409 |
|
| 2011 |
Earl D, Bradnam K, St John J, Darling A, Lin D, Fass J, Yu HO, Buffalo V, Zerbino DR, Diekhans M, Nguyen N, Ariyaratne PN, Sung WK, Ning Z, Haimel M, ... ... DeRisi JL, et al. Assemblathon 1: a competitive assessment of de novo short read assembly methods. Genome Research. 21: 2224-41. PMID 21926179 DOI: 10.1101/Gr.126599.111 |
0.632 |
|
| 2011 |
Hwang JY, Kawasuji T, Lowes DJ, Clark JA, Connelly MC, Zhu F, Guiguemde WA, Sigal MS, Wilson EB, Derisi JL, Guy RK. Synthesis and evaluation of 7-substituted 4-aminoquinoline analogues for antimalarial activity. Journal of Medicinal Chemistry. 54: 7084-93. PMID 21910466 DOI: 10.1021/jm200636z |
0.41 |
|
| 2011 |
Runckel C, Flenniken ML, Engel JC, Ruby JG, Ganem D, Andino R, DeRisi JL. Temporal analysis of the honey bee microbiome reveals four novel viruses and seasonal prevalence of known viruses, Nosema, and Crithidia. Plos One. 6: e20656. PMID 21687739 DOI: 10.1371/Journal.Pone.0020656 |
0.792 |
|
| 2011 |
Wootton SC, Kim DS, Kondoh Y, Chen E, Lee JS, Song JW, Huh JW, Taniguchi H, Chiu C, Boushey H, Lancaster LH, Wolters PJ, DeRisi J, Ganem D, Collard HR. Viral infection in acute exacerbation of idiopathic pulmonary fibrosis. American Journal of Respiratory and Critical Care Medicine. 183: 1698-702. PMID 21471095 DOI: 10.1164/rccm.201010-1752OC |
0.733 |
|
| 2011 |
Sorber K, Dimon MT, DeRisi JL. RNA-Seq analysis of splicing in Plasmodium falciparum uncovers new splice junctions, alternative splicing and splicing of antisense transcripts. Nucleic Acids Research. 39: 3820-35. PMID 21245033 DOI: 10.1093/Nar/Gkq1223 |
0.784 |
|
| 2010 |
Zhang Y, Anderson M, Weisman JL, Lu M, Choy CJ, Boyd VA, Price J, Sigal M, Clark J, Connelly M, Zhu F, Guiguemde WA, Jeffries C, Yang L, Lemoff A, ... ... Derisi JL, et al. Evaluation of Diarylureas for Activity Against Plasmodium falciparum. Acs Medicinal Chemistry Letters. 1: 460-465. PMID 21243104 DOI: 10.1021/Ml100083C |
0.398 |
|
| 2010 |
Dimon MT, Sorber K, DeRisi JL. HMMSplicer: a tool for efficient and sensitive discovery of known and novel splice junctions in RNA-Seq data. Plos One. 5: e13875. PMID 21079731 DOI: 10.1371/Journal.Pone.0013875 |
0.795 |
|
| 2010 |
Fordyce PM, Gerber D, Tran D, Zheng J, Li H, DeRisi JL, Quake SR. De novo identification and biophysical characterization of transcription-factor binding sites with microfluidic affinity analysis. Nature Biotechnology. 28: 970-5. PMID 20802496 DOI: 10.1038/Nbt.1675 |
0.631 |
|
| 2010 |
Greninger AL, Holtz L, Kang G, Ganem D, Wang D, DeRisi JL. Serological evidence of human klassevirus infection. Clinical and Vaccine Immunology : Cvi. 17: 1584-8. PMID 20739504 DOI: 10.1128/Cvi.00152-10 |
0.44 |
|
| 2010 |
Guiguemde WA, Shelat AA, Bouck D, Duffy S, Crowther GJ, Davis PH, Smithson DC, Connelly M, Clark J, Zhu F, Jiménez-DÃaz MB, Martinez MS, Wilson EB, Tripathi AK, Gut J, ... ... Derisi JL, et al. Chemical genetics of Plasmodium falciparum. Nature. 465: 311-5. PMID 20485428 DOI: 10.1038/Nature09099 |
0.45 |
|
| 2010 |
Mattiazzi M, Jambhekar A, Kaferle P, Derisi JL, Krizaj I, Petrovic U. Genetic interactions between a phospholipase A2 and the Rim101 pathway components in S. cerevisiae reveal a role for this pathway in response to changes in membrane composition and shape. Molecular Genetics and Genomics : Mgg. 283: 519-30. PMID 20379744 DOI: 10.1007/S00438-010-0533-8 |
0.64 |
|
| 2010 |
Ray S, Madrid PB, Catz P, LeValley SE, Furniss MJ, Rausch LL, Guy RK, DeRisi JL, Iyer LV, Green CE, Mirsalis JC. Development of a new generation of 4-aminoquinoline antimalarial compounds using predictive pharmacokinetic and toxicology models. Journal of Medicinal Chemistry. 53: 3685-95. PMID 20361799 DOI: 10.1021/Jm100057H |
0.423 |
|
| 2010 |
Chiu CY, Greninger AL, Chen EC, Haggerty TD, Parsonnet J, Delwart E, Derisi JL, Ganem D. Cultivation and serological characterization of a human Theiler's-like cardiovirus associated with diarrheal disease. Journal of Virology. 84: 4407-14. PMID 20164225 DOI: 10.1128/Jvi.02536-09 |
0.438 |
|
| 2010 |
Kistler AL, Smith JM, Greninger AL, Derisi JL, Ganem D. Analysis of naturally occurring avian bornavirus infection and transmission during an outbreak of proventricular dilatation disease among captive psittacine birds. Journal of Virology. 84: 2176-9. PMID 19955301 DOI: 10.1128/Jvi.02191-09 |
0.464 |
|
| 2010 |
Fordyce PM, Gerber D, Tran D, Zheng J, Li H, Quake SR, DeRisi JL. A Microfluidics-Based Platform For Identification and Detailed Characterization of Transcription Factor Binding Sites Biophysical Journal. 98: 70a. DOI: 10.1016/j.bpj.2009.12.396 |
0.579 |
|
| 2009 |
Webster DR, Hekele AG, Lauring AS, Fischer KF, Li H, Andino R, DeRisi JL. An enhanced single base extension technique for the analysis of complex viral populations. Plos One. 4: e7453. PMID 19834618 DOI: 10.1371/Journal.Pone.0007453 |
0.507 |
|
| 2009 |
Gancz AY, Kistler AL, Greninger AL, Farnoushi Y, Mechani S, Perl S, Berkowitz A, Perez N, Clubb S, DeRisi JL, Ganem D, Lublin A. Experimental induction of proventricular dilatation disease in cockatiels (Nymphicus hollandicus) inoculated with brain homogenates containing avian bornavirus 4. Virology Journal. 6: 100. PMID 19589169 DOI: 10.1186/1743-422X-6-100 |
0.501 |
|
| 2009 |
Greninger AL, Runckel C, Chiu CY, Haggerty T, Parsonnet J, Ganem D, DeRisi JL. The complete genome of klassevirus - a novel picornavirus in pediatric stool. Virology Journal. 6: 82. PMID 19538752 DOI: 10.1186/1743-422X-6-82 |
0.801 |
|
| 2008 |
Sorber K, Chiu C, Webster D, Dimon M, Ruby JG, Hekele A, DeRisi JL. The long march: a sample preparation technique that enhances contig length and coverage by high-throughput short-read sequencing. Plos One. 3: e3495. PMID 18941527 DOI: 10.1371/Journal.Pone.0003495 |
0.776 |
|
| 2008 |
Chiu CY, Greninger AL, Kanada K, Kwok T, Fischer KF, Runckel C, Louie JK, Glaser CA, Yagi S, Schnurr DP, Haggerty TD, Parsonnet J, Ganem D, DeRisi JL. Identification of cardioviruses related to Theiler's murine encephalomyelitis virus in human infections. Proceedings of the National Academy of Sciences of the United States of America. 105: 14124-9. PMID 18768820 DOI: 10.1073/Pnas.0805968105 |
0.784 |
|
| 2008 |
Kistler AL, Gancz A, Clubb S, Skewes-Cox P, Fischer K, Sorber K, Chiu CY, Lublin A, Mechani S, Farnoushi Y, Greninger A, Wen CC, Karlene SB, Ganem D, DeRisi JL. Recovery of divergent avian bornaviruses from cases of proventricular dilatation disease: identification of a candidate etiologic agent. Virology Journal. 5: 88. PMID 18671869 DOI: 10.1186/1743-422X-5-88 |
0.787 |
|
| 2008 |
Chiu CY, Urisman A, Greenhow TL, Rouskin S, Yagi S, Schnurr D, Wright C, Drew WL, Wang D, Weintrub PS, Derisi JL, Ganem D. Utility of DNA microarrays for detection of viruses in acute respiratory tract infections in children. The Journal of Pediatrics. 153: 76-83. PMID 18571541 DOI: 10.1016/J.Jpeds.2007.12.035 |
0.613 |
|
| 2008 |
Madrid PB, Liou AP, DeRisi JL, Guy RK. Incorporation of an intramolecular hydrogen-bonding motif in the side chain of 4-aminoquinolines enhances activity against drug-resistant P. falciparum (Journal of Medical Chemistry (2006) 49 (4540)) Journal of Medicinal Chemistry. 51: 699. DOI: 10.1021/jm701572a |
0.382 |
|
| 2007 |
Shock JL, Fischer KF, DeRisi JL. Whole-genome analysis of mRNA decay in Plasmodium falciparum reveals a global lengthening of mRNA half-life during the intra-erythrocytic development cycle. Genome Biology. 8: R134. PMID 17612404 DOI: 10.1186/Gb-2007-8-7-R134 |
0.765 |
|
| 2007 |
Chiu CY, Alizadeh AA, Rouskin S, Merker JD, Yeh E, Yagi S, Schnurr D, Patterson BK, Ganem D, DeRisi JL. Diagnosis of a critical respiratory illness caused by human metapneumovirus by use of a pan-virus microarray. Journal of Clinical Microbiology. 45: 2340-3. PMID 17494722 DOI: 10.1128/Jcm.00364-07 |
0.473 |
|
| 2007 |
Kistler AL, Webster DR, Rouskin S, Magrini V, Credle JJ, Schnurr DP, Boushey HA, Mardis ER, Li H, DeRisi JL. Genome-wide diversity and selective pressure in the human rhinovirus. Virology Journal. 4: 40. PMID 17477878 DOI: 10.1186/1743-422X-4-40 |
0.593 |
|
| 2007 |
Jambhekar A, Derisi JL. Cis-acting determinants of asymmetric, cytoplasmic RNA transport. Rna (New York, N.Y.). 13: 625-42. PMID 17449729 DOI: 10.1261/Rna.262607 |
0.666 |
|
| 2006 |
Zhu J, Jambhekar A, Sarver A, DeRisi J. A Bayesian network driven approach to model the transcriptional response to nitric oxide in Saccharomyces cerevisiae. Plos One. 1: e94. PMID 17183726 DOI: 10.1371/Journal.Pone.0000094 |
0.763 |
|
| 2006 |
Chiu CY, Rouskin S, Koshy A, Urisman A, Fischer K, Yagi S, Schnurr D, Eckburg PB, Tompkins LS, Blackburn BG, Merker JD, Patterson BK, Ganem D, DeRisi JL. Microarray detection of human parainfluenzavirus 4 infection associated with respiratory failure in an immunocompetent adult. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 43: e71-6. PMID 16983602 DOI: 10.1086/507896 |
0.621 |
|
| 2006 |
Dahl EL, Shock JL, Shenai BR, Gut J, DeRisi JL, Rosenthal PJ. Tetracyclines specifically target the apicoplast of the malaria parasite Plasmodium falciparum. Antimicrobial Agents and Chemotherapy. 50: 3124-31. PMID 16940111 DOI: 10.1128/Aac.00394-06 |
0.775 |
|
| 2006 |
Weisman JL, Liou AP, Shelat AA, Cohen FE, Guy RK, DeRisi JL. Searching for new antimalarial therapeutics amongst known drugs. Chemical Biology & Drug Design. 67: 409-16. PMID 16882315 DOI: 10.1111/j.1747-0285.2006.00391.x |
0.436 |
|
| 2006 |
Madrid PB, Liou AP, DeRisi JL, Guy RK. Incorporation of an intramolecular hydrogen-bonding motif in the side chain of 4-aminoquinolines enhances activity against drug-resistant P. falciparum. Journal of Medicinal Chemistry. 49: 4535-43. PMID 16854059 DOI: 10.1021/Jm0600951 |
0.408 |
|
| 2006 |
Urisman A, Molinaro RJ, Fischer N, Plummer SJ, Casey G, Klein EA, Malathi K, Magi-Galluzzi C, Tubbs RR, Ganem D, Silverman RH, DeRisi JL. Identification of a novel Gammaretrovirus in prostate tumors of patients homozygous for R462Q RNASEL variant. Plos Pathogens. 2: e25. PMID 16609730 DOI: 10.1371/Journal.Ppat.0020025 |
0.654 |
|
| 2006 |
Llinás M, Bozdech Z, Wong ED, Adai AT, DeRisi JL. Comparative whole genome transcriptome analysis of three Plasmodium falciparum strains. Nucleic Acids Research. 34: 1166-73. PMID 16493140 DOI: 10.1093/Nar/Gkj517 |
0.51 |
|
| 2006 |
Anderson MO, Sherrill J, Madrid PB, Liou AP, Weisman JL, DeRisi JL, Guy RK. Parallel synthesis of 9-aminoacridines and their evaluation against chloroquine-resistant Plasmodium falciparum. Bioorganic & Medicinal Chemistry. 14: 334-43. PMID 16216519 DOI: 10.1016/J.Bmc.2005.08.017 |
0.435 |
|
| 2005 |
Jambhekar A, McDermott K, Sorber K, Shepard KA, Vale RD, Takizawa PA, DeRisi JL. Unbiased selection of localization elements reveals cis-acting determinants of mRNA bud localization in Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America. 102: 18005-10. PMID 16326802 DOI: 10.1073/Pnas.0509229102 |
0.772 |
|
| 2005 |
Urisman A, Fischer KF, Chiu CY, Kistler AL, Beck S, Wang D, DeRisi JL. E-Predict: a computational strategy for species identification based on observed DNA microarray hybridization patterns. Genome Biology. 6: R78. PMID 16168085 DOI: 10.1186/Gb-2005-6-9-R78 |
0.593 |
|
| 2005 |
Sarver A, DeRisi J. Fzf1p regulates an inducible response to nitrosative stress in Saccharomyces cerevisiae. Molecular Biology of the Cell. 16: 4781-91. PMID 16014606 DOI: 10.1091/Mbc.E05-05-0436 |
0.626 |
|
| 2005 |
Madrid PB, Sherrill J, Liou AP, Weisman JL, Derisi JL, Guy RK. Synthesis of ring-substituted 4-aminoquinolines and evaluation of their antimalarial activities. Bioorganic & Medicinal Chemistry Letters. 15: 1015-8. PMID 15686903 DOI: 10.1016/J.Bmcl.2004.12.037 |
0.402 |
|
| 2005 |
Niwa M, Patil CK, DeRisi J, Walter P. Genome-scale approaches for discovering novel nonconventional splicing substrates of the Ire1 nuclease. Genome Biology. 6: R3. PMID 15642095 DOI: 10.1186/Gb-2004-6-1-R3 |
0.36 |
|
| 2004 |
Galgoczy DJ, Cassidy-Stone A, Llinás M, O'Rourke SM, Herskowitz I, DeRisi JL, Johnson AD. Genomic dissection of the cell-type-specification circuit in Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America. 101: 18069-74. PMID 15604142 DOI: 10.1073/Pnas.0407611102 |
0.5 |
|
| 2004 |
Llinás M, DeRisi JL. Pernicious plans revealed: Plasmodium falciparum genome wide expression analysis. Current Opinion in Microbiology. 7: 382-7. PMID 15358256 DOI: 10.1016/J.Mib.2004.06.014 |
0.573 |
|
| 2004 |
Glynn EF, Megee PC, Yu HG, Mistrot C, Unal E, Koshland DE, DeRisi JL, Gerton JL. Genome-wide mapping of the cohesin complex in the yeast Saccharomyces cerevisiae. Plos Biology. 2: E259. PMID 15309048 DOI: 10.1371/Journal.Pbio.0020259 |
0.578 |
|
| 2004 |
Weber SA, Gerton JL, Polancic JE, DeRisi JL, Koshland D, Megee PC. The kinetochore is an enhancer of pericentric cohesin binding. Plos Biology. 2: E260. PMID 15309047 DOI: 10.1371/Journal.Pbio.0020260 |
0.554 |
|
| 2004 |
Madrid PB, Wilson NT, DeRisi JL, Guy RK. Parallel synthesis and antimalarial screening of a 4-aminoquinoline library. Journal of Combinatorial Chemistry. 6: 437-42. PMID 15132606 DOI: 10.1021/Cc0340473 |
0.434 |
|
| 2003 |
Wang D, Urisman A, Liu YT, Springer M, Ksiazek TG, Erdman DD, Mardis ER, Hickenbotham M, Magrini V, Eldred J, Latreille JP, Wilson RK, Ganem D, DeRisi JL. Viral discovery and sequence recovery using DNA microarrays. Plos Biology. 1: E2. PMID 14624234 DOI: 10.1371/Journal.Pbio.0000002 |
0.672 |
|
| 2003 |
Shepard KA, Gerber AP, Jambhekar A, Takizawa PA, Brown PO, Herschlag D, DeRisi JL, Vale RD. Widespread cytoplasmic mRNA transport in yeast: identification of 22 bud-localized transcripts using DNA microarray analysis. Proceedings of the National Academy of Sciences of the United States of America. 100: 11429-34. PMID 13679573 DOI: 10.1073/Pnas.2033246100 |
0.713 |
|
| 2003 |
Bozdech Z, Llinás M, Pulliam BL, Wong ED, Zhu J, DeRisi JL. The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum. Plos Biology. 1: E5. PMID 12929205 DOI: 10.1371/Journal.Pbio.0000005 |
0.67 |
|
| 2003 |
Bozdech Z, Zhu J, Joachimiak MP, Cohen FE, Pulliam B, DeRisi JL. Expression profiling of the schizont and trophozoite stages of Plasmodium falciparum with a long-oligonucleotide microarray. Genome Biology. 4: R9. PMID 12620119 DOI: 10.1186/Gb-2003-4-2-R9 |
0.519 |
|
| 2002 |
Gerton JL, DeRisi JL. Mnd1p: an evolutionarily conserved protein required for meiotic recombination. Proceedings of the National Academy of Sciences of the United States of America. 99: 6895-900. PMID 12011448 DOI: 10.1073/Pnas.102167899 |
0.612 |
|
| 2001 |
DeRisi J. Overview of nucleic acid arrays. Current Protocols in Neuroscience / Editorial Board, Jacqueline N. Crawley ... [Et Al.]. Unit 4.25. PMID 18428485 DOI: 10.1002/0471142301.Ns0425S16 |
0.336 |
|
| 2001 |
Derisi J. Overview of nucleic acid arrays. Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [Et Al.]. Unit 22.1. PMID 18265199 DOI: 10.1002/0471142727.Mb2201S49 |
0.337 |
|
| 2001 |
Backhus LE, DeRisi J, Bisson LF. Functional genomic analysis of a commercial wine strain of Saccharomyces cerevisiae under differing nitrogen conditions. Fems Yeast Research. 1: 111-25. PMID 12702356 DOI: 10.1111/J.1567-1364.2001.Tb00022.X |
0.315 |
|
| 2001 |
Miki R, Kadota K, Bono H, Mizuno Y, Tomaru Y, Carninci P, Itoh M, Shibata K, Kawai J, Konno H, Watanabe S, Sato K, Tokusumi Y, Kikuchi N, Ishii Y, ... ... DeRisi JL, et al. Delineating developmental and metabolic pathways in vivo by expression profiling using the RIKEN set of 18,816 full-length enriched mouse cDNA arrays. Proceedings of the National Academy of Sciences of the United States of America. 98: 2199-204. PMID 11226216 DOI: 10.1073/Pnas.041605498 |
0.767 |
|
| 2001 |
Kuhn KM, DeRisi JL, Brown PO, Sarnow P. Global and specific translational regulation in the genomic response of Saccharomyces cerevisiae to a rapid transfer from a fermentable to a nonfermentable carbon source. Molecular and Cellular Biology. 21: 916-27. PMID 11154278 DOI: 10.1128/Mcb.21.3.916-927.2001 |
0.446 |
|
| 2000 |
Ogawa N, DeRisi J, Brown PO. New components of a system for phosphate accumulation and polyphosphate metabolism in Saccharomyces cerevisiae revealed by genomic expression analysis. Molecular Biology of the Cell. 11: 4309-21. PMID 11102525 DOI: 10.1091/Mbc.11.12.4309 |
0.551 |
|
| 2000 |
Gerton JL, DeRisi J, Shroff R, Lichten M, Brown PO, Petes TD. Global mapping of meiotic recombination hotspots and coldspots in the yeast Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America. 97: 11383-90. PMID 11027339 DOI: 10.1073/Pnas.97.21.11383 |
0.68 |
|
| 2000 |
Khodursky AB, Peter BJ, Schmid MB, DeRisi J, Botstein D, Brown PO, Cozzarelli NR. Analysis of topoisomerase function in bacterial replication fork movement: use of DNA microarrays. Proceedings of the National Academy of Sciences of the United States of America. 97: 9419-24. PMID 10944214 DOI: 10.1073/Pnas.97.17.9419 |
0.636 |
|
| 2000 |
DeRisi J, van den Hazel B, Marc P, Balzi E, Brown P, Jacq C, Goffeau A. Genome microarray analysis of transcriptional activation in multidrug resistance yeast mutants. Febs Letters. 470: 156-60. PMID 10734226 DOI: 10.1016/S0014-5793(00)01294-1 |
0.536 |
|
| 2000 |
Hayward RE, Derisi JL, Alfadhli S, Kaslow DC, Brown PO, Rathod PK. Shotgun DNA microarrays and stage-specific gene expression in Plasmodium falciparum malaria. Molecular Microbiology. 35: 6-14. PMID 10632873 DOI: 10.1046/J.1365-2958.2000.01730.X |
0.523 |
|
| 1999 |
Wilson M, DeRisi J, Kristensen HH, Imboden P, Rane S, Brown PO, Schoolnik GK. Exploring drug-induced alterations in gene expression in Mycobacterium tuberculosis by microarray hybridization. Proceedings of the National Academy of Sciences of the United States of America. 96: 12833-8. PMID 10536008 DOI: 10.1073/Pnas.96.22.12833 |
0.522 |
|
| 1999 |
DeRisi JL, Iyer VR. Genomics and array technology. Current Opinion in Oncology. 11: 76-9. PMID 9914882 DOI: 10.1097/00001622-199901000-00015 |
0.611 |
|
| 1999 |
Okazaki Y, Miki R, Mizuno Y, Tomaru Y, Kadota K, Carninci P, Shibata K, Itoh M, Ozawa Y, Kawai J, Konno H, Fukunishi Y, Kusumi T, Goto H, Nitanda H, ... ... DeRisi J, et al. Gene expression profiling using a mouse full-length 20 K cDNA microarray Nature Genetics. 23: 66-67. DOI: 10.1038/14379 |
0.754 |
|
| 1999 |
Hayashibara KC, Ray E, Elashoff D, DeRisi J, McCusker JH, Siegmund DO, Brown PO. Mapping single and multigenetic traits in S. cerevisiae by genomic mismatch scanning and DNA microarrays Nature Genetics. 23: 49-50. DOI: 10.1038/14321 |
0.496 |
|
| 1998 |
Lutfiyya LL, Iyer VR, DeRisi J, DeVit MJ, Brown PO, Johnston M. Characterization of three related glucose repressors and genes they regulate in Saccharomyces cerevisiae. Genetics. 150: 1377-91. PMID 9832517 |
0.402 |
|
| 1998 |
Marton MJ, DeRisi JL, Bennett HA, Iyer VR, Meyer MR, Roberts CJ, Stoughton R, Burchard J, Slade D, Dai H, Bassett DE, Hartwell LH, Brown PO, Friend SH. Drug target validation and identification of secondary drug target effects using DNA microarrays. Nature Medicine. 4: 1293-301. PMID 9809554 DOI: 10.1038/3282 |
0.646 |
|
| 1998 |
Chu S, DeRisi J, Eisen M, Mulholland J, Botstein D, Brown PO, Herskowitz I. The transcriptional program of sporulation in budding yeast. Science (New York, N.Y.). 282: 699-705. PMID 9784122 DOI: 10.1126/Science.282.5389.699 |
0.746 |
|
| 1998 |
Gerton JL, Ohgi S, Olsen M, DeRisi J, Brown PO. Effects of mutations in residues near the active site of human immunodeficiency virus type 1 integrase on specific enzyme-substrate interactions. Journal of Virology. 72: 5046-55. PMID 9573274 DOI: 10.1128/Jvi.72.6.5046-5055.1998 |
0.669 |
|
| 1997 |
DeRisi JL, Iyer VR, Brown PO. Exploring the metabolic and genetic control of gene expression on a genomic scale. Science (New York, N.Y.). 278: 680-6. PMID 9381177 DOI: 10.1126/Science.278.5338.680 |
0.667 |
|
| 1997 |
Lashkari DA, DeRisi JL, McCusker JH, Namath AF, Gentile C, Hwang SY, Brown PO, Davis RW. Yeast microarrays for genome wide parallel genetic and gene expression analysis. Proceedings of the National Academy of Sciences of the United States of America. 94: 13057-62. PMID 9371799 DOI: 10.1073/Pnas.94.24.13057 |
0.498 |
|
| 1997 |
Bittner ML, DeRisi J, Meltzer PS, Chen Y, Penland L, Ray M, Su YA, Jiang, Hofmann T, Brown P, Trent JM. Assaying disease-specific gene expression by CDNA micro-arrays Cancer Genetics and Cytogenetics. 98: 150. DOI: 10.1016/S0165-4608(97)90244-2 |
0.492 |
|
| 1996 |
DeRisi J, Penland L, Brown PO, Bittner ML, Meltzer PS, Ray M, Chen Y, Su YA, Trent JM. Use of a cDNA microarray to analyse gene expression patterns in human cancer. Nature Genetics. 14: 457-60. PMID 8944026 DOI: 10.1038/Ng1296-457 |
0.458 |
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