| Year |
Citation |
Score |
| 2023 |
Cordeiro Y, Freire MHO, Wiecikowski AF, do Amaral MJ. (Dys)functional insights into nucleic acids and RNA-binding proteins modulation of the prion protein and α-synuclein phase separation. Biophysical Reviews. 15: 577-589. PMID 37681103 DOI: 10.1007/s12551-023-01067-4 |
0.362 |
|
| 2021 |
P B Gomes M, de Lima EV, G Q Barros-Aragão F, Passos YM, Lemos FS, Zamberlan DC, Ribeiro G, Macedo B, C Ferreira N, Silva JL, Figueiredo CP, Clarke JR, Cordeiro Y. Prion protein complexed to a DNA aptamer induce behavioral and synapse dysfunction in mice. Behavioural Brain Research. 419: 113680. PMID 34822947 DOI: 10.1016/j.bbr.2021.113680 |
0.306 |
|
| 2021 |
do Amaral MJ, Cordeiro Y. Intrinsic disorder and phase transitions: Pieces in the puzzling role of the prion protein in health and disease. Progress in Molecular Biology and Translational Science. 183: 1-43. PMID 34656326 DOI: 10.1016/bs.pmbts.2021.06.001 |
0.334 |
|
| 2021 |
Angelli JN, Passos YM, Brito JMA, Silva JL, Cordeiro Y, Vieira TCRG. Rabbit PrP Is Partially Resistant to Aggregation Induced by Different Biological Cofactors. Frontiers in Neuroscience. 15: 689315. PMID 34220442 DOI: 10.3389/fnins.2021.689315 |
0.338 |
|
| 2020 |
do Amaral MJ, Araujo TS, Díaz NC, Accornero F, Polycarpo CR, Cordeiro Y, Cabral KMS, Almeida MS. Phase Separation and Disorder-to-Order Transition of Human Brain Expressed X-Linked 3 (hBEX3) in the Presence of Small Fragments of tRNA. Journal of Molecular Biology. PMID 32142787 DOI: 10.1016/J.Jmb.2020.02.030 |
0.386 |
|
| 2020 |
Matos CO, Passos YM, Amaral MJd, Macedo B, Tempone MH, Bezerra OCL, Moraes MO, Almeida MS, Weber G, Missailidis S, Silva JL, Uversky VN, Pinheiro AS, Cordeiro Y. Liquid‐liquid phase separation and fibrillation of the prion protein modulated by a high‐affinity DNA aptamer The Faseb Journal. 34: 365-385. PMID 31914616 DOI: 10.1096/Fj.201901897R |
0.396 |
|
| 2019 |
de Oliveira GAP, Cordeiro Y, Silva JL, Vieira TCRG. Liquid-liquid phase transitions and amyloid aggregation in proteins related to cancer and neurodegenerative diseases. Advances in Protein Chemistry and Structural Biology. 118: 289-331. PMID 31928729 DOI: 10.1016/Bs.Apcsb.2019.08.002 |
0.395 |
|
| 2019 |
Kovachev PS, Gomes MPB, Cordeiro Y, Ferreira NC, Valadão LPF, Ascari LM, Rangel LP, Silva JL, Sanyal S. RNA modulates aggregation of the recombinant mammalian prion protein by direct interaction. Scientific Reports. 9: 12406. PMID 31455808 DOI: 10.1038/S41598-019-48883-X |
0.41 |
|
| 2019 |
Cordeiro Y, Vieira T, Kovachev PS, Sanyal S, Silva JL. Modulation of p53 and prion protein aggregation by RNA. Biochimica Et Biophysica Acta. Proteins and Proteomics. PMID 30826454 DOI: 10.1016/J.Bbapap.2019.02.006 |
0.419 |
|
| 2019 |
Conceição RA, Ascari LM, Ferreira NC, Goes CF, Matos CO, Pinheiro AS, Alves MA, Souza AMT, Maia RC, Caughey B, Cordeiro Y, Barbosa MLC. Synthesis and in silico and in vitro evaluation of trimethoxy-benzamides designed as anti-prion derivatives Medicinal Chemistry Research. 28: 2128-2141. DOI: 10.1007/S00044-019-02441-2 |
0.406 |
|
| 2018 |
Silva CMRd, Chura-Chambi RM, Pereira LR, Cordeiro Y, Ferreira LCdS, Morganti L. Association of high pressure and alkaline condition for solubilization of inclusion bodies and refolding of the NS1 protein from zika virus Bmc Biotechnology. 18: 1-10. PMID 30541520 DOI: 10.1186/S12896-018-0486-2 |
0.358 |
|
| 2017 |
Ferreira NC, Ascari LM, Hughson AG, Cavalheiro GR, Góes CF, Fernandes PN, Hollister JR, da Conceição RA, Silva DS, Souza AMT, Barbosa MLC, Lara FA, Martins RAP, Caughey B, Cordeiro Y. A promising anti-prion trimethoxychalcone binds to the globular domain of PrP(C) and changes its cellular location. Antimicrobial Agents and Chemotherapy. PMID 29133563 DOI: 10.1128/Aac.01441-17 |
0.414 |
|
| 2017 |
Macedo B, Cordeiro Y. Unraveling Prion Protein Interactions with Aptamers and Other PrP-Binding Nucleic Acids. International Journal of Molecular Sciences. 18. PMID 28513534 DOI: 10.3390/Ijms18051023 |
0.456 |
|
| 2017 |
Kovachev PS, Banerjee D, Rangel LP, Eriksson J, Pedrote MM, Martins-Dinis MMDC, Edwards K, Cordeiro Y, Silva JL, Sanyal S. Distinct modulatory role of RNA in the aggregation of the tumor suppressor protein p53 core domain. The Journal of Biological Chemistry. PMID 28420731 DOI: 10.1074/Jbc.M116.762096 |
0.396 |
|
| 2017 |
Oliveira GAPd, Marques MA, Cordeiro Y, Schuabb C, Moraes AH, Winter R, Oschkinat H, Foguel D, Freitas MSd, Silva JL. Structural Basis for the Dissociation of Alpha-Synuclein Fibrils Triggered by Pressure Perturbation of the Hydrophobic Core Biophysical Journal. 112: 1-8. DOI: 10.1016/J.Bpj.2016.11.985 |
0.38 |
|
| 2016 |
de Oliveira GA, Marques MA, Cruzeiro-Silva C, Cordeiro Y, Schuabb C, Moraes AH, Winter R, Oschkinat H, Foguel D, Freitas MS, Silva JL. Structural basis for the dissociation of α-synuclein fibrils triggered by pressure perturbation of the hydrophobic core. Scientific Reports. 6: 37990. PMID 27901101 DOI: 10.1038/Srep37990 |
0.398 |
|
| 2016 |
Cordeiro Y. Virtual drug screening for prion diseases: A valuable step? Ebiomedicine. 9: 15-16. PMID 27377625 DOI: 10.1016/J.Ebiom.2016.06.043 |
0.344 |
|
| 2016 |
Silva JL, Cordeiro Y. The "Jekyll and Hyde" Actions of Nucleic Acids on the Prion-like Aggregation of Proteins. The Journal of Biological Chemistry. PMID 27288413 DOI: 10.1074/Jbc.R116.733428 |
0.458 |
|
| 2016 |
Macedo B, Cordeiro Y, Ventura S. Mammalian prion amyloid formation in bacteria Prion. 10: 112-118. PMID 26910379 DOI: 10.1080/19336896.2016.1141859 |
0.366 |
|
| 2015 |
Macedo B, Sant'Anna R, Navarro S, Cordeiro Y, Ventura S. Mammalian prion protein (PrP) forms conformationally different amyloid intracellular aggregates in bacteria. Microbial Cell Factories. 14: 174. PMID 26536866 DOI: 10.1186/S12934-015-0361-Y |
0.466 |
|
| 2015 |
Cabral KM, Raymundo DP, Silva VS, Sampaio LA, Johanson L, Hill LF, Almeida FC, Cordeiro Y, Almeida MS. Biophysical Studies on BEX3, the p75NTR-Associated Cell Death Executor, Reveal a High-Order Oligomer with Partially Folded Regions. Plos One. 10: e0137916. PMID 26383250 DOI: 10.1371/Journal.Pone.0137916 |
0.39 |
|
| 2015 |
Cordeiro Y, Ferreira NC. New approaches for the selection and evaluation of anti-prion organic compounds. Mini Reviews in Medicinal Chemistry. 15: 84-92. PMID 25723455 DOI: 10.2174/1389557515666150227111629 |
0.36 |
|
| 2014 |
Cordeiro Y, Macedo B, Silva JL, Gomes MPB. Pathological implications of nucleic acid interactions with proteins associated with neurodegenerative diseases. Biophysical Reviews. 6: 97-110. PMID 28509960 DOI: 10.1007/S12551-013-0132-0 |
0.464 |
|
| 2014 |
Sant'Anna R, Braga C, Varejão N, Pimenta KM, Graña-Montes R, Alves A, Cortines J, Cordeiro Y, Ventura S, Foguel D. The importance of a gatekeeper residue on the aggregation of transthyretin: implications for transthyretin-related amyloidoses. The Journal of Biological Chemistry. 289: 28324-37. PMID 25086037 DOI: 10.1074/Jbc.M114.563981 |
0.402 |
|
| 2014 |
Vieira TC, Cordeiro Y, Caughey B, Silva JL. Heparin binding confers prion stability and impairs its aggregation. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 28: 2667-76. PMID 24648544 DOI: 10.1096/Fj.13-246777 |
0.454 |
|
| 2014 |
Chaves JA, Sanchez-López C, Gomes MP, Sisnande T, Macedo B, de Oliveira VE, Braga CA, Rangel LP, Silva JL, Quintanar L, Cordeiro Y. Biophysical and morphological studies on the dual interaction of non-octarepeat prion protein peptides with copper and nucleic acids. Journal of Biological Inorganic Chemistry : Jbic : a Publication of the Society of Biological Inorganic Chemistry. 19: 839-51. PMID 24557708 DOI: 10.1007/S00775-014-1115-8 |
0.373 |
|
| 2014 |
Ferreira NC, Marques IA, Conceição WA, Macedo B, Machado CS, Mascarello A, Chiaradia-Delatorre LD, Yunes RA, Nunes RJ, Hughson AG, Raymond LD, Pascutti PG, Caughey B, Cordeiro Y. Anti-prion activity of a panel of aromatic chemical compounds: in vitro and in silico approaches. Plos One. 9: e84531. PMID 24400098 DOI: 10.1371/Journal.Pone.0084531 |
0.392 |
|
| 2014 |
Gonçalves KM, Barbosa LR, Lima LM, Cortines JR, Kalume DE, Leal IC, Mariz e Miranda LS, de Souza RO, Cordeiro Y. Conformational dissection of Thermomyces lanuginosus lipase in solution. Biophysical Chemistry. 185: 88-97. PMID 24382361 DOI: 10.1016/J.Bpc.2013.12.001 |
0.311 |
|
| 2013 |
Silva JL, Rangel LP, Costa DC, Cordeiro Y, De Moura Gallo CV. Expanding the prion concept to cancer biology: dominant-negative effect of aggregates of mutant p53 tumour suppressor. Bioscience Reports. 33. PMID 24003888 DOI: 10.1042/Bsr20130065 |
0.357 |
|
| 2013 |
de Oliveira GA, Pereira EG, Ferretti GD, Valente AP, Cordeiro Y, Silva JL. Intramolecular dynamics within the N-Cap-SH3-SH2 regulatory unit of the c-Abl tyrosine kinase reveal targeting to the cellular membrane. The Journal of Biological Chemistry. 288: 28331-45. PMID 23928308 DOI: 10.1074/Jbc.M113.500926 |
0.304 |
|
| 2013 |
Cordeiro Y, Foguel D, Silva JL. Pressure-temperature folding landscape in proteins involved in neurodegenerative diseases and cancer. Biophysical Chemistry. 183: 9-18. PMID 23849959 DOI: 10.1016/J.Bpc.2013.06.002 |
0.448 |
|
| 2013 |
Chura-Chambi RM, Cordeiro Y, Malavasi NV, Lemke LS, Rodrigues D, Morganti L. An analysis of the factors that affect the dissociation of inclusion bodies and the refolding of endostatin under high pressure Process Biochemistry. 48: 250-259. DOI: 10.1016/J.Procbio.2012.12.017 |
0.3 |
|
| 2012 |
de Oliveira GA, Pereira EG, Dias CV, Souza TL, Ferretti GD, Cordeiro Y, Camillo LR, Cascardo J, Almeida FC, Valente AP, Silva JL. Moniliophthora perniciosa necrosis- and ethylene-inducing protein 2 (MpNep2) as a metastable dimer in solution: structural and functional implications. Plos One. 7: e45620. PMID 23029140 DOI: 10.1371/Journal.Pone.0045620 |
0.38 |
|
| 2012 |
Ano Bom AP, Rangel LP, Costa DC, de Oliveira GA, Sanches D, Braga CA, Gava LM, Ramos CH, Cepeda AO, Stumbo AC, De Moura Gallo CV, Cordeiro Y, Silva JL. Mutant p53 aggregates into prion-like amyloid oligomers and fibrils: implications for cancer. The Journal of Biological Chemistry. 287: 28152-62. PMID 22715097 DOI: 10.1074/Jbc.M112.340638 |
0.382 |
|
| 2012 |
Macedo B, Millen TA, Braga CA, Gomes MP, Ferreira PS, Kraineva J, Winter R, Silva JL, Cordeiro Y. Nonspecific prion protein-nucleic acid interactions lead to different aggregates and cytotoxic species. Biochemistry. 51: 5402-13. PMID 22691027 DOI: 10.1021/Bi300440E |
0.457 |
|
| 2012 |
Gomes MP, Vieira TC, Cordeiro Y, Silva JL. The role of RNA in mammalian prion protein conversion. Wiley Interdisciplinary Reviews. Rna. 3: 415-28. PMID 22095764 DOI: 10.1002/Wrna.118 |
0.38 |
|
| 2012 |
Linden R, Cordeiro Y, Lima LM. Allosteric function and dysfunction of the prion protein. Cellular and Molecular Life Sciences : Cmls. 69: 1105-24. PMID 21984610 DOI: 10.1007/S00018-011-0847-7 |
0.404 |
|
| 2011 |
Silva JL, Vieira TC, Gomes MP, Rangel LP, Scapin SM, Cordeiro Y. Experimental approaches to the interaction of the prion protein with nucleic acids and glycosaminoglycans: Modulators of the pathogenic conversion. Methods (San Diego, Calif.). 53: 306-17. PMID 21145399 DOI: 10.1016/J.Ymeth.2010.12.002 |
0.459 |
|
| 2011 |
Vieira TC, Reynaldo DP, Gomes MP, Almeida MS, Cordeiro Y, Silva JL. Heparin binding by murine recombinant prion protein leads to transient aggregation and formation of RNA-resistant species. Journal of the American Chemical Society. 133: 334-44. PMID 21142149 DOI: 10.1021/Ja106725P |
0.43 |
|
| 2011 |
Levy CB, Stumbo AC, Bom APDA, Portari EA, Cordeiro Y, Silva JL, DeMoura-Gallo CV. Erratum to “Co-localization of mutant p53 and amyloid-like protein aggregates in breast tumors” [Int. J. Biochem. Cell Biol. 43 (1) (2011) 60–64] The International Journal of Biochemistry & Cell Biology. 43: 946. DOI: 10.1016/J.Biocel.2011.01.009 |
0.343 |
|
| 2010 |
Macedo B, Kaschula CH, Hunter R, Chaves JA, van der Merwe JD, Silva JL, Egan TJ, Cordeiro Y. Synthesis and anti-prion activity evaluation of aminoquinoline analogues. European Journal of Medicinal Chemistry. 45: 5468-73. PMID 20797807 DOI: 10.1016/J.Ejmech.2010.07.054 |
0.402 |
|
| 2010 |
Silva JL, Gomes MP, Vieira TC, Cordeiro Y. PrP interactions with nucleic acids and glycosaminoglycans in function and disease. Frontiers in Bioscience (Landmark Edition). 15: 132-50. PMID 20036811 DOI: 10.2741/3611 |
0.406 |
|
| 2010 |
Bom AP, Freitas MS, Moreira FS, Ferraz D, Sanches D, Gomes AM, Valente AP, Cordeiro Y, Silva JL. The p53 core domain is a molten globule at low pH: functional implications of a partially unfolded structure. The Journal of Biological Chemistry. 285: 2857-66. PMID 19933157 DOI: 10.1074/Jbc.M109.075861 |
0.318 |
|
| 2010 |
Silva JL, Vieira TC, Gomes MP, Bom AP, Lima LM, Freitas MS, Ishimaru D, Cordeiro Y, Foguel D. Ligand binding and hydration in protein misfolding: insights from studies of prion and p53 tumor suppressor proteins. Accounts of Chemical Research. 43: 271-9. PMID 19817406 DOI: 10.1021/Ar900179T |
0.478 |
|
| 2009 |
Romano SA, Cordeiro Y, Lima LM, Lopes MH, Silva JL, Foguel D, Linden R. Reciprocal remodeling upon binding of the prion protein to its signaling partner hop/STI1. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 23: 4308-16. PMID 19703931 DOI: 10.1096/Fj.09-138974 |
0.413 |
|
| 2009 |
Ishimaru D, Ano Bom AP, Lima LM, Quesado PA, Oyama MF, de Moura Gallo CV, Cordeiro Y, Silva JL. Cognate DNA stabilizes the tumor suppressor p53 and prevents misfolding and aggregation. Biochemistry. 48: 6126-35. PMID 19505151 DOI: 10.1021/Bi9003028 |
0.346 |
|
| 2009 |
Marques AF, Cordeiro Y, Silva JL, Lima LM. Enhanced prion protein stability coupled to DNA recognition and milieu acidification. Biophysical Chemistry. 141: 135-9. PMID 19286300 DOI: 10.1016/J.Bpc.2008.12.011 |
0.389 |
|
| 2009 |
Silva JL, Lima LMTR, Foguel D, Cordeiro Y. Response to Radulescu and Brenig: Infectious nucleic acids in prion disease: halfway there Trends in Biochemical Sciences. 34: 5-6. DOI: 10.1016/J.Tibs.2008.10.001 |
0.376 |
|
| 2008 |
Gomes MP, Cordeiro Y, Silva JL. The peculiar interaction between mammalian prion protein and RNA. Prion. 2: 64-6. PMID 19098437 DOI: 10.4161/Pri.2.2.6988 |
0.366 |
|
| 2008 |
Gomes MP, Millen TA, Ferreira PS, e Silva NL, Vieira TC, Almeida MS, Silva JL, Cordeiro Y. Prion protein complexed to N2a cellular RNAs through its N-terminal domain forms aggregates and is toxic to murine neuroblastoma cells. The Journal of Biological Chemistry. 283: 19616-25. PMID 18456654 DOI: 10.1074/Jbc.M802102200 |
0.376 |
|
| 2008 |
Silva JL, Lima LM, Foguel D, Cordeiro Y. Intriguing nucleic-acid-binding features of mammalian prion protein. Trends in Biochemical Sciences. 33: 132-40. PMID 18243708 DOI: 10.1016/J.Tibs.2007.11.003 |
0.439 |
|
| 2006 |
Lima LM, Cordeiro Y, Tinoco LW, Marques AF, Oliveira CL, Sampath S, Kodali R, Choi G, Foguel D, Torriani I, Caughey B, Silva JL. Structural insights into the interaction between prion protein and nucleic acid. Biochemistry. 45: 9180-7. PMID 16866364 DOI: 10.1021/Bi060532D |
0.427 |
|
| 2006 |
Cordeiro Y, Kraineva J, Suarez MC, Tempesta AG, Kelly JW, Silva JL, Winter R, Foguel D. Fourier transform infrared spectroscopy provides a fingerprint for the tetramer and for the aggregates of transthyretin. Biophysical Journal. 91: 957-67. PMID 16698785 DOI: 10.1529/Biophysj.106.085928 |
0.355 |
|
| 2006 |
Silva JL, Cordeiro Y, Foguel D. Protein folding and aggregation: two sides of the same coin in the condensation of proteins revealed by pressure studies. Biochimica Et Biophysica Acta. 1764: 443-51. PMID 16480935 DOI: 10.1016/J.Bbapap.2005.11.012 |
0.436 |
|
| 2005 |
Cordeiro Y, Kraineva J, Winter R, Silva JL. Volume and energy folding landscape of prion protein revealed by pressure. Brazilian Journal of Medical and Biological Research = Revista Brasileira De Pesquisas Mã©Dicas E Biolã³Gicas / Sociedade Brasileira De BiofãSica ... [Et Al.]. 38: 1195-201. PMID 16082459 DOI: 10.1590/S0100-879X2005000800006 |
0.399 |
|
| 2005 |
Cordeiro Y, Kraineva J, Gomes MP, Lopes MH, Martins VR, Lima LM, Foguel D, Winter R, Silva JL. The amino-terminal PrP domain is crucial to modulate prion misfolding and aggregation. Biophysical Journal. 89: 2667-76. PMID 16040743 DOI: 10.1529/Biophysj.105.067603 |
0.426 |
|
| 2005 |
Cordeiro Y, Silva JL. The hypothesis of the catalytic action of nucleic acid on the conversion of prion protein. Protein and Peptide Letters. 12: 251-5. PMID 15777274 DOI: 10.2174/0929866053587138 |
0.438 |
|
| 2004 |
Cordeiro Y, Kraineva J, Ravindra R, Lima LM, Gomes MP, Foguel D, Winter R, Silva JL. Hydration and packing effects on prion folding and beta-sheet conversion. High pressure spectroscopy and pressure perturbation calorimetry studies. The Journal of Biological Chemistry. 279: 32354-9. PMID 15173173 DOI: 10.1074/Jbc.M404295200 |
0.348 |
|
| 2004 |
Cordeiro Y, Lima LM, Gomes MP, Foguel D, Silva JL. Modulation of prion protein oligomerization, aggregation, and beta-sheet conversion by 4,4'-dianilino-1,1'-binaphthyl-5,5'-sulfonate (bis-ANS). The Journal of Biological Chemistry. 279: 5346-52. PMID 14634010 DOI: 10.1074/Jbc.M312262200 |
0.458 |
|
| 2003 |
Ishimaru D, Andrade LR, Teixeira LS, Quesado PA, Maiolino LM, Lopez PM, Cordeiro Y, Costa LT, Heckl WM, Weissmüller G, Foguel D, Silva JL. Fibrillar aggregates of the tumor suppressor p53 core domain. Biochemistry. 42: 9022-7. PMID 12885235 DOI: 10.1021/Bi034218K |
0.426 |
|
| 2001 |
Cordeiro Y, Machado F, Juliano L, Juliano MA, Brentani RR, Foguel D, Silva JL. DNA converts cellular prion protein into the beta-sheet conformation and inhibits prion peptide aggregation. The Journal of Biological Chemistry. 276: 49400-9. PMID 11604397 DOI: 10.1074/Jbc.M106707200 |
0.443 |
|
| 2001 |
Pontes L, Cordeiro Y, Giongo V, Villas-Boas M, Barreto A, Araújo JR, Silva JL. Pressure-induced formation of inactive triple-shelled rotavirus particles is associated with changes in the spike protein Vp4. Journal of Molecular Biology. 307: 1171-9. PMID 11292333 DOI: 10.1006/Jmbi.2001.4512 |
0.304 |
|
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