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Ruchi Lohia - Publications

Affiliations: 
2019 Computational and Integrative Biology Rutgers University, Camden 
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12 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Pitman C, Santiago-McRae E, Lohia R, Bassi K, Joseph TT, Hansen MEB, Brannigan G. The blobulator: a webtool for identification and visual exploration of hydrophobic modularity in protein sequences. Biorxiv : the Preprint Server For Biology. PMID 38293114 DOI: 10.1101/2024.01.15.575761  0.713
2022 Lohia R, Hansen MEB, Brannigan G. Contiguously hydrophobic sequences are functionally significant throughout the human exome. Proceedings of the National Academy of Sciences of the United States of America. 119: e2116267119. PMID 35294280 DOI: 10.1073/pnas.2116267119  0.566
2022 Ahmed SS, Rifat ZT, Lohia R, Campbell AJ, Dunker AK, Rahman MS, Iqbal S. Characterization of intrinsically disordered regions in proteins informed by human genetic diversity. Plos Computational Biology. 18: e1009911. PMID 35275927 DOI: 10.1371/journal.pcbi.1009911  0.425
2020 Lohia R, Bassi K, Hansen M, Brannigan G. Disease Associated Mutations in Intrinsically Disordered Proteins Show Evidence of Enrichment in Hydrophobic Blobs Biophysical Journal. 118. DOI: 10.1016/J.Bpj.2019.11.1280  0.684
2019 Lohia R, Salari R, Brannigan G. Sequence specificity despite intrinsic disorder: How a disease-associated Val/Met polymorphism rearranges tertiary interactions in a long disordered protein. Plos Computational Biology. 15: e1007390. PMID 31626641 DOI: 10.1371/Journal.Pcbi.1007390  0.781
2019 Lohia R, Brannigan G. Conformational Effects of a Disease-Associated Hydrophobic-to-Hydrophobic Substitution and Histidine Protonation State Located at the Midpoint of the Intrinsically Disordered Region of proBDNF Biophysical Journal. 116: 179a. DOI: 10.1016/J.Bpj.2018.11.993  0.704
2018 Salari R, Joseph T, Lohia R, Hénin J, Brannigan G. A streamlined, general approach for computing ligand binding free energies and its application to GPCR-bound cholesterol. Journal of Chemical Theory and Computation. PMID 30358394 DOI: 10.1021/Acs.Jctc.8B00447  0.667
2018 Lohia R, Brannigan G. Conformational Effects of Various Hydrophobic-to-Hydrophobic Substitution Located at the Midpoint of the Intrinsically Disordered Region of ProBDNF Biophysical Journal. 114: 591a. DOI: 10.1016/J.Bpj.2017.11.3229  0.721
2017 Lohia R, Salari R, Brannigan G. Mechanism Underlying Conformational Effects of a Disease-Associated Hydrophobic-to-Hydrophobic Substitution on an Intrinsically Disordered Region Biophysical Journal. 112: 207a. DOI: 10.1016/J.Bpj.2016.11.1145  0.782
2016 Lohia R, Salari R, Brannigan G. Effects of a Structured Domain on the Conformational Ensemble of Disordered Regions in Brain-Derived Neurotrophic Factor Biophysical Journal. 110: 559a. DOI: 10.1016/J.Bpj.2015.11.2989  0.791
2015 Lohia R, Salari R, Brannigan G. Prediction of the Effects of the Val66Met Polymorphism and Adjacent Structured Domains on the Conformational Ensemble of an Intrinsically Disordered Protein, Brain-Derived Neurotrophic Factor Biophysical Journal. 108: 386a-387a. DOI: 10.1016/J.Bpj.2014.11.2118  0.793
2014 Lohia R, Salari R, Brannigan G. Prediction of the Effects of the Val66Met Polymorphism on the Conformational Ensemble of an Intrinsically Disordered Protein, Brain-Derived Neurotrophic Factor Biophysical Journal. 106: 425a. DOI: 10.1016/J.Bpj.2013.11.2397  0.795
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