David C. Kulp, Ph.D. - Publications

Affiliations: 
University of California, Santa Cruz, Santa Cruz, CA, United States 

21 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Reed E, Nunez S, Kulp D, Qian J, Reilly MP, Foulkes AS. A guide to genome-wide association analysis and post-analytic interrogation. Statistics in Medicine. 34: 3769-92. PMID 26343929 DOI: 10.1002/Sim.6605  0.539
2010 Bahl A, Davis PH, Behnke M, Dzierszinski F, Jagalur M, Chen F, Shanmugam D, White MW, Kulp D, Roos DS. A novel multifunctional oligonucleotide microarray for Toxoplasma gondii Bmc Genomics. 11. PMID 20974003 DOI: 10.1186/1471-2164-11-603  0.472
2009 Kwan AL, Li L, Kulp DC, Dutcher SK, Stormo GD. Improving gene-finding in Chlamydomonas reinhardtii:GreenGenie2. Bmc Genomics. 10: 210. PMID 19422688 DOI: 10.1186/1471-2164-10-210  0.449
2007 Jagalur M, Pal C, Learned-Miller E, Zoeller RT, Kulp D. Analyzing in situ gene expression in the mouse brain with image registration, feature extraction and block clustering. Bmc Bioinformatics. 8: S5. PMID 18269699 DOI: 10.1186/1471-2105-8-S10-S5  0.343
2007 Nene V, Wortman JR, Lawson D, Haas B, Kodira C, Tu ZJ, Loftus B, Xi Z, Megy K, Grabherr M, Ren Q, Zdobnov EM, Lobo NF, Campbell KS, Brown SE, ... ... Kulp D, et al. Genome sequence of Aedes aegypti, a major arbovirus vector. Science (New York, N.Y.). 316: 1718-23. PMID 17510324 DOI: 10.1126/Science.1138878  0.611
2006 Kulp DC, Jagalur M. Causal inference of regulator-target pairs by gene mapping of expression phenotypes. Bmc Genomics. 7: 125. PMID 16719927 DOI: 10.1186/1471-2164-7-125  0.33
2006 Sugnet CW, Srinivasan K, Clark TA, O'Brien G, Cline MS, Wang H, Williams A, Kulp D, Blume JE, Haussler D, Ares M. Unusual intron conservation near tissue-regulated exons found by splicing microarrays. Plos Computational Biology. 2: e4. PMID 16424921 DOI: 10.1371/Journal.Pcbi.0020004  0.702
2005 Di X, Matsuzaki H, Webster TA, Hubbell E, Liu G, Dong S, Bartell D, Huang J, Chiles R, Yang G, Shen MM, Kulp D, Kennedy GC, Mei R, Jones KW, et al. Dynamic model based algorithms for screening and genotyping over 100 K SNPs on oligonucleotide microarrays. Bioinformatics (Oxford, England). 21: 1958-63. PMID 15657097 DOI: 10.1093/Bioinformatics/Bti275  0.361
2004 Cheng J, Cline M, Martin J, Finkelstein D, Awad T, Kulp D, Siani-Rose MA. A knowledge-based clustering algorithm driven by Gene Ontology. Journal of Biopharmaceutical Statistics. 14: 687-700. PMID 15468759 DOI: 10.1081/Bip-200025659  0.304
2004 Cheng J, Sun S, Tracy A, Hubbell E, Morris J, Valmeekam V, Kimbrough A, Cline MS, Liu G, Shigeta R, Kulp D, Siani-Rose MA. NetAffx Gene Ontology Mining Tool: a visual approach for microarray data analysis. Bioinformatics (Oxford, England). 20: 1462-3. PMID 14962933 DOI: 10.1093/Bioinformatics/Bth087  0.308
2003 Liu WM, Di X, Yang G, Matsuzaki H, Huang J, Mei R, Ryder TB, Webster TA, Dong S, Liu G, Jones KW, Kennedy GC, Kulp D. Algorithms for large-scale genotyping microarrays. Bioinformatics (Oxford, England). 19: 2397-403. PMID 14668223 DOI: 10.1093/Bioinformatics/Btg332  0.386
2003 Mei R, Hubbell E, Bekiranov S, Mittmann M, Christians FC, Shen MM, Lu G, Fang J, Liu WM, Ryder T, Kaplan P, Kulp D, Webster TA. Probe selection for high-density oligonucleotide arrays. Proceedings of the National Academy of Sciences of the United States of America. 100: 11237-42. PMID 14500916 DOI: 10.1073/Pnas.1534744100  0.413
2003 Wang H, Hubbell E, Hu JS, Mei G, Cline M, Lu G, Clark T, Siani-Rose MA, Ares M, Kulp DC, Haussler D. Gene structure-based splice variant deconvolution using a microarray platform. Bioinformatics (Oxford, England). 19: i315-22. PMID 12855476 DOI: 10.1093/Bioinformatics/Btg1044  0.562
2003 Li JB, Lin S, Jia H, Wu H, Roe BA, Kulp D, Stormo GD, Dutcher SK. Analysis of Chlamydomonas reinhardtii genome structure using large-scale sequencing of regions on linkage groups I and III. The Journal of Eukaryotic Microbiology. 50: 145-55. PMID 12836870 DOI: 10.1111/J.1550-7408.2003.Tb00109.X  0.634
2003 Liu G, Loraine AE, Shigeta R, Cline M, Cheng J, Valmeekam V, Sun S, Kulp D, Siani-Rose MA. NetAffx: Affymetrix probesets and annotations. Nucleic Acids Research. 31: 82-6. PMID 12519953 DOI: 10.1093/Nar/Gkg121  0.621
2002 Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, Agarwal P, Agarwala R, Ainscough R, Alexandersson M, An P, Antonarakis SE, Attwood J, Baertsch R, Bailey J, ... ... Kulp D, et al. Initial sequencing and comparative analysis of the mouse genome. Nature. 420: 520-62. PMID 12466850 DOI: 10.1038/Nature01262  0.566
2002 Cline M, Liu G, Loraine AE, Shigeta R, Cheng J, Mei G, Kulp D, Siani-Rose MA. Structure-based comparison of four eukaryotic genomes. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 127-38. PMID 11928469  0.486
2001 Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, FitzHugh W, Funke R, Gage D, Harris K, Heaford A, Howland J, ... ... Kulp D, et al. Initial sequencing and analysis of the human genome. Nature. 409: 860-921. PMID 11237011 DOI: 10.1038/35057062  0.773
2001 Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, Fitzhugh W, Funke R, Gage D, Harris K, Heaford A, Howland J, ... ... Kulp D, et al. Erratum: Initial sequencing and analysis of the human genome: International Human Genome Sequencing Consortium (Nature (2001) 409 (860-921)) Nature. 412: 565-566. DOI: 10.1038/35087627  0.777
2000 Reese MG, Kulp D, Tammana H, Haussler D. Genie--gene finding in Drosophila melanogaster. Genome Research. 10: 529-538. PMID 10779493 DOI: 10.1101/Gr.10.4.529  0.692
2000 Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, Amanatides PG, Scherer SE, Li PW, Hoskins RA, Galle RF, George RA, Lewis SE, Richards S, Ashburner M, Henderson SN, ... ... Kulp D, et al. The genome sequence of Drosophila melanogaster. Science (New York, N.Y.). 287: 2185-95. PMID 10731132 DOI: 10.1126/Science.287.5461.2185  0.723
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