| Year |
Citation |
Score |
| 2024 |
Rahman N, O'Cathail C, Zyoud A, Sokolov A, Oude Munnink B, Grüning B, Cummins C, Amid C, Nieuwenhuijse DF, Visontai D, Yuan DY, Gupta D, Prasad DK, Gulyás GM, Rinck G, ... ... Cochrane G, et al. Mobilisation and analyses of publicly available SARS-CoV-2 data for pandemic responses. Microbial Genomics. 10. PMID 38358325 DOI: 10.1099/mgen.0.001188 |
0.363 |
|
| 2023 |
Shaw F, Minotto A, McTaggart S, Providence A, Harrison P, Paupério J, Rajan J, Burgin J, Cochrane G, Kilias E, Lawniczak MKN, Davey R. COPO - Managing sample metadata for biodiversity: considerations from the Darwin Tree of Life project. Wellcome Open Research. 7: 279. PMID 39091415 DOI: 10.12688/wellcomeopenres.18499.2 |
0.357 |
|
| 2023 |
Timme RE, Karsch-Mizrachi I, Waheed Z, Arita M, MacCannell D, Maguire F, Petit Iii R, Page AJ, Mendes CI, Nasar MI, Oluniyi P, Tyler AD, Raphenya AR, Guthrie JL, Olawoye I, ... ... Cochrane G, et al. Putting everything in its place: using the INSDC compliant Pathogen Data Object Model to better structure genomic data submitted for public health applications. Microbial Genomics. 9. PMID 38085797 DOI: 10.1099/mgen.0.001145 |
0.37 |
|
| 2023 |
Yuan D, Ahamed A, Burgin J, Cummins C, Devraj R, Gueye K, Gupta D, Gupta V, Haseeb M, Ihsan M, Ivanov E, Jayathilaka S, Kadhirvelu VB, Kumar M, Lathi A, ... ... Cochrane G, et al. The European Nucleotide Archive in 2023. Nucleic Acids Research. PMID 37956313 DOI: 10.1093/nar/gkad1067 |
0.501 |
|
| 2023 |
Gurbich TA, Almeida A, Beracochea M, Burdett T, Burgin J, Cochrane G, Raj S, Richardson L, Rogers AB, Sakharova E, Salazar GA, Finn RD. MGnify Genomes: a resource for biome-specific microbial genome catalogues. Journal of Molecular Biology. 168016. PMID 36806692 DOI: 10.1016/j.jmb.2023.168016 |
0.363 |
|
| 2022 |
Richardson L, Allen B, Baldi G, Beracochea M, Bileschi ML, Burdett T, Burgin J, Caballero-Pérez J, Cochrane G, Colwell LJ, Curtis T, Escobar-Zepeda A, Gurbich TA, Kale V, Korobeynikov A, et al. MGnify: the microbiome sequence data analysis resource in 2023. Nucleic Acids Research. PMID 36477304 DOI: 10.1093/nar/gkac1080 |
0.458 |
|
| 2022 |
Burgin J, Ahamed A, Cummins C, Devraj R, Gueye K, Gupta D, Gupta V, Haseeb M, Ihsan M, Ivanov E, Jayathilaka S, Balavenkataraman Kadhirvelu V, Kumar M, Lathi A, Leinonen R, ... ... Cochrane G, et al. The European Nucleotide Archive in 2022. Nucleic Acids Research. PMID 36399492 DOI: 10.1093/nar/gkac1051 |
0.392 |
|
| 2022 |
Scholz AH, Freitag J, Lyal CHC, Sara R, Cepeda ML, Cancio I, Sett S, Hufton AL, Abebaw Y, Bansal K, Benbouza H, Boga HI, Brisse S, Bruford MW, Clissold H, ... Cochrane G, et al. Multilateral benefit-sharing from digital sequence information will support both science and biodiversity conservation. Nature Communications. 13: 1086. PMID 35197464 DOI: 10.1038/s41467-022-28594-0 |
0.307 |
|
| 2022 |
Lange M, Alako BTF, Cochrane G, Ghaffar M, Mascher M, Habekost PK, Hillebrand U, Scholz U, Schorch F, Freitag J, Scholz AH. Quantitative monitoring of nucleotide sequence data from genetic resources in context of their citation in the scientific literature. Gigascience. 10. PMID 34966925 DOI: 10.1093/gigascience/giab084 |
0.407 |
|
| 2021 |
Cummins C, Ahamed A, Aslam R, Burgin J, Devraj R, Edbali O, Gupta D, Harrison PW, Haseeb M, Holt S, Ibrahim T, Ivanov E, Jayathilaka S, Kadhirvelu V, Kay S, ... ... Cochrane G, et al. The European Nucleotide Archive in 2021. Nucleic Acids Research. PMID 34850158 DOI: 10.1093/nar/gkab1051 |
0.378 |
|
| 2021 |
Harrison PW, Sokolov A, Nayak A, Fan J, Zerbino D, Cochrane G, Flicek P. The FAANG Data Portal: Global, Open-Access, "FAIR", and Richly Validated Genotype to Phenotype Data for High-Quality Functional Annotation of Animal Genomes. Frontiers in Genetics. 12: 639238. PMID 34220930 DOI: 10.3389/fgene.2021.639238 |
0.448 |
|
| 2021 |
Harrison PW, Lopez R, Rahman N, Allen SG, Aslam R, Buso N, Cummins C, Fathy Y, Felix E, Glont M, Jayathilaka S, Kadam S, Kumar M, Lauer KB, Malhotra G, ... ... Cochrane G, et al. The COVID-19 Data Portal: accelerating SARS-CoV-2 and COVID-19 research through rapid open access data sharing. Nucleic Acids Research. PMID 34048576 DOI: 10.1093/nar/gkab417 |
0.308 |
|
| 2021 |
Arita M, Karsch-Mizrachi I, Cochrane G. The international nucleotide sequence database collaboration. Nucleic Acids Research. 49: D121-D124. PMID 33166387 DOI: 10.1093/nar/gkaa967 |
0.412 |
|
| 2020 |
Cantelli G, Cochrane G, Brooksbank C, McDonagh E, Flicek P, McEntyre J, Birney E, Apweiler R. The European Bioinformatics Institute: empowering cooperation in response to a global health crisis. Nucleic Acids Research. PMID 33245775 DOI: 10.1093/nar/gkaa1077 |
0.338 |
|
| 2020 |
Harrison PW, Ahamed A, Aslam R, Alako BTF, Burgin J, Buso N, Courtot M, Fan J, Gupta D, Haseeb M, Holt S, Ibrahim T, Ivanov E, Jayathilaka S, Balavenkataraman Kadhirvelu V, ... ... Cochrane G, et al. The European Nucleotide Archive in 2020. Nucleic Acids Research. PMID 33175160 DOI: 10.1093/nar/gkaa1028 |
0.356 |
|
| 2020 |
Matamoros S, Hendriksen RS, Pataki BÁ, Pakseresht N, Rossello M, Silvester N, Amid C, Aarestrup FM, Koopmans M, Cochrane G, Csabai I, Lund O, Schultsz C. Accelerating surveillance and research of antimicrobial resistance - an online repository for sharing of antimicrobial susceptibility data associated with whole-genome sequences. Microbial Genomics. 6. PMID 32255760 DOI: 10.1099/mgen.0.000342 |
0.445 |
|
| 2020 |
Challis R, Richards E, Rajan J, Cochrane G, Blaxter M. BlobToolKit - Interactive Quality Assessment of Genome Assemblies. G3 (Bethesda, Md.). PMID 32071071 DOI: 10.1534/G3.119.400908 |
0.487 |
|
| 2019 |
Xavier BB, Mysara M, Bolzan M, Ribeiro-Gonçalves B, Alako BTF, Harrison P, Lammens C, Kumar-Singh S, Goossens H, Carriço JA, Cochrane G, Malhotra-Kumar S. BacPipe: A Rapid, User-Friendly Whole-Genome Sequencing Pipeline for Clinical Diagnostic Bacteriology. Iscience. 23: 100769. PMID 31887656 DOI: 10.1016/J.Isci.2019.100769 |
0.512 |
|
| 2019 |
Amid C, Pakseresht N, Silvester N, Jayathilaka S, Lund O, Dynovski LD, Pataki BÁ, Visontai D, Xavier BB, Alako BTF, Belka A, Cisneros JLB, Cotten M, Haringhuizen GB, Harrison PW, ... ... Cochrane G, et al. The COMPARE Data Hubs. Database : the Journal of Biological Databases and Curation. 2019. PMID 31868882 DOI: 10.1093/Database/Baz136 |
0.459 |
|
| 2019 |
Amid C, Alako BTF, Balavenkataraman Kadhirvelu V, Burdett T, Burgin J, Fan J, Harrison PW, Holt S, Hussein A, Ivanov E, Jayathilaka S, Kay S, Keane T, Leinonen R, Liu X, ... ... Cochrane G, et al. The European Nucleotide Archive in 2019. Nucleic Acids Research. PMID 31722421 DOI: 10.1093/Nar/Gkz1063 |
0.524 |
|
| 2019 |
Cook CE, Stroe O, Cochrane G, Birney E, Apweiler R. The European Bioinformatics Institute in 2020: building a global infrastructure of interconnected data resources for the life sciences. Nucleic Acids Research. PMID 31701143 DOI: 10.1093/Nar/Gkz1033 |
0.444 |
|
| 2019 |
Mitchell AL, Almeida A, Beracochea M, Boland M, Burgin J, Cochrane G, Crusoe MR, Kale V, Potter SC, Richardson LJ, Sakharova E, Scheremetjew M, Korobeynikov A, Shlemov A, Kunyavskaya O, et al. MGnify: the microbiome analysis resource in 2020. Nucleic Acids Research. PMID 31696235 DOI: 10.1093/Nar/Gkz1035 |
0.485 |
|
| 2019 |
Sweeney BA, Petrov AI, Burkov B, Finn RD, Bateman A, Szymanski M, Karlowski WM, Gorodkin J, Seemann SE, Cannone JJ, Gutell RR, Fey P, Basu S, Kay S, Cochrane G, et al. RNAcentral: a hub of information for non-coding RNA sequences Nucleic Acids Research. 47. PMID 30395267 DOI: 10.1093/Nar/Gky1034 |
0.497 |
|
| 2019 |
Milano A, Rajan J, Cochrane G. Creation and development of a marine-community data coordination service: the EMBRIC Configurator F1000research. 8. DOI: 10.7490/F1000Research.1116538.1 |
0.346 |
|
| 2018 |
Roux S, Adriaenssens EM, Dutilh BE, Koonin EV, Kropinski AM, Krupovic M, Kuhn JH, Lavigne R, Brister JR, Varsani A, Amid C, Aziz RK, Bordenstein SR, Bork P, Breitbart M, ... Cochrane GR, et al. Minimum Information about an Uncultivated Virus Genome (MIUViG). Nature Biotechnology. PMID 30556814 DOI: 10.1038/Nbt.4306 |
0.349 |
|
| 2018 |
Cook CE, Lopez R, Stroe O, Cochrane G, Brooksbank C, Birney E, Apweiler R. The European Bioinformatics Institute in 2018: tools, infrastructure and training. Nucleic Acids Research. PMID 30445657 DOI: 10.1093/Nar/Gky1124 |
0.441 |
|
| 2018 |
Harrison PW, Alako B, Amid C, Cerdeño-Tárraga A, Cleland I, Holt S, Hussein A, Jayathilaka S, Kay S, Keane T, Leinonen R, Liu X, Martínez-Villacorta J, Milano A, Pakseresht N, ... ... Cochrane G, et al. The European Nucleotide Archive in 2018. Nucleic Acids Research. PMID 30395270 DOI: 10.1093/Nar/Gky1078 |
0.51 |
|
| 2018 |
Harrison PW, Fan J, Richardson D, Clarke L, Zerbino D, Cochrane G, Archibald AL, Schmidt CJ, Flicek P. FAANG, establishing metadata standards, validation and best practices for the farmed and companion animal community. Animal Genetics. PMID 30311252 DOI: 10.1111/Age.12736 |
0.461 |
|
| 2018 |
Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, ... ... Cochrane G, et al. Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnology. 36: 660. PMID 29979671 DOI: 10.1038/Nbt0718-660A |
0.382 |
|
| 2018 |
Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, ... ... Cochrane G, et al. Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnology. 36: 196. PMID 29406516 DOI: 10.1038/Nbt0218-196A |
0.442 |
|
| 2017 |
Karsch-Mizrachi I, Takagi T, Cochrane G. The international nucleotide sequence database collaboration. Nucleic Acids Research. PMID 29190397 DOI: 10.1093/nar/gkx1097 |
0.438 |
|
| 2017 |
Cook CE, Bergman MT, Cochrane G, Apweiler R, Birney E. The European Bioinformatics Institute in 2017: data coordination and integration. Nucleic Acids Research. PMID 29186510 DOI: 10.1093/Nar/Gkx1154 |
0.481 |
|
| 2017 |
Silvester N, Alako B, Amid C, Cerdeño-Tarrága A, Clarke L, Cleland I, Harrison PW, Jayathilaka S, Kay S, Keane T, Leinonen R, Liu X, Martínez-Villacorta J, Menchi M, Reddy K, ... ... Cochrane G, et al. The European Nucleotide Archive in 2017. Nucleic Acids Research. PMID 29140475 DOI: 10.1093/Nar/Gkx1125 |
0.497 |
|
| 2017 |
Mitchell AL, Scheremetjew M, Denise H, Potter S, Tarkowska A, Qureshi M, Salazar GA, Pesseat S, Boland MA, Hunter FMI, Ten Hoopen P, Alako B, Amid C, Wilkinson DJ, Curtis TP, ... Cochrane G, et al. EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies. Nucleic Acids Research. PMID 29069476 DOI: 10.1093/Nar/Gkx967 |
0.524 |
|
| 2017 |
Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, ... ... Cochrane G, et al. Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnology. 35: 725-731. PMID 28787424 DOI: 10.1038/Nbt.3893 |
0.479 |
|
| 2017 |
Alberti A, Poulain J, Engelen S, Labadie K, Romac S, Ferrera I, Albini G, Aury JM, Belser C, Bertrand A, Cruaud C, Da Silva C, Dossat C, Gavory F, Gas S, ... ... Cochrane G, et al. Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition. Scientific Data. 4: 170093. PMID 28763055 DOI: 10.1038/Sdata.2017.93 |
0.535 |
|
| 2017 |
Hoopen PT, Finn RD, Bongo LA, Corre E, Fosso B, Meyer F, Mitchell A, Pelletier E, Pesole G, Santamaria M, Willassen NP, Cochrane G. The metagenomic data life-cycle: standards and best practices. Gigascience. PMID 28637310 DOI: 10.1093/Gigascience/Gix047 |
0.477 |
|
| 2017 |
Petrov AI, Kay SJE, Kalvari I, Howe KL, Gray KA, Bruford EA, Kersey PJ, Cochrane G, Finn RD, Bateman A, Kozomara A, Griffiths-Jones S, Frankish A, Zwieb CW, et al. RNAcentral: a comprehensive database of non-coding RNA sequences. Nucleic Acids Research. 45: D128-D134. PMID 27794554 DOI: 10.1093/Nar/Gkw1008 |
0.502 |
|
| 2016 |
Hoopen PT, Walls RL, Cannon EK, Cochrane G, Cole J, Johnston A, Karsch-Mizrachi I, Yilmaz P. Plant specimen contextual data consensus. Gigascience. 5: 1-4. PMID 28369359 DOI: 10.1093/Gigascience/Giw002 |
0.431 |
|
| 2016 |
Toribio AL, Alako B, Amid C, Cerdeño-Tarrága A, Clarke L, Cleland I, Fairley S, Gibson R, Goodgame N, Ten Hoopen P, Jayathilaka S, Kay S, Leinonen R, Liu X, Martínez-Villacorta J, ... ... Cochrane G, et al. European Nucleotide Archive in 2016. Nucleic Acids Research. PMID 27899630 DOI: 10.1093/Nar/Gkw1106 |
0.578 |
|
| 2016 |
Bousfield D, McEntyre J, Velankar S, Papadatos G, Bateman A, Cochrane G, Kim JH, Graef F, Vartak V, Alako B, Blomberg N. Patterns of database citation in articles and patents indicate long-term scientific and industry value of biological data resources. F1000research. 5. PMID 27092246 DOI: 10.12688/F1000Research.7911.1 |
0.439 |
|
| 2016 |
Ten Hoopen P, Amid C, Luigi Buttigieg P, Pafilis E, Bravakos P, Cerdeño-Tárraga AM, Gibson R, Kahlke T, Legaki A, Narayana Murthy K, Papastefanou G, Pereira E, Rossello M, Luisa Toribio A, Cochrane G. Value, but high costs in post-deposition data curation. Database : the Journal of Biological Databases and Curation. 2016. PMID 26861660 DOI: 10.1093/Database/Bav126 |
0.465 |
|
| 2016 |
Xavier BB, Das AJ, Cochrane G, De Ganck S, Kumar-Singh S, Aarestrup FM, Goossens H, Malhotra-Kumar S. Consolidating and exploring antibiotic resistance gene data resources. Journal of Clinical Microbiology. PMID 26818666 DOI: 10.1128/Jcm.02717-15 |
0.374 |
|
| 2016 |
Cochrane G, Karsch-Mizrachi I, Takagi T. The International Nucleotide Sequence Database Collaboration. Nucleic Acids Research. 44: D48-50. PMID 26657633 DOI: 10.1093/nar/gkv1323 |
0.46 |
|
| 2016 |
Gibson R, Amid C, Cerdeno-Tarraga A, Hoopen Pt, Rajan J, Rossello M, Toribio AL, Alako B, Cleland I, Goodgame N, Jayathilaka S, Kay S, Leinonen R, Liu X, Pallreddy S, ... ... Cochrane G, et al. Sustainable biocuration of functional annotation at the European Nucleotide Archive F1000research. 5. DOI: 10.7490/F1000Research.1111818.1 |
0.34 |
|
| 2015 |
Cook CE, Bergman MT, Finn RD, Cochrane G, Birney E, Apweiler R. The European Bioinformatics Institute in 2016: Data growth and integration. Nucleic Acids Research. PMID 26673705 DOI: 10.1093/Nar/Gkv1352 |
0.441 |
|
| 2015 |
Gibson R, Alako B, Amid C, Cerdeño-Tárraga A, Cleland I, Goodgame N, Ten Hoopen P, Jayathilaka S, Kay S, Leinonen R, Liu X, Pallreddy S, Pakseresht N, Rajan J, Rosselló M, ... ... Cochrane G, et al. Biocuration of functional annotation at the European nucleotide archive. Nucleic Acids Research. PMID 26615190 DOI: 10.1093/Nar/Gkv1311 |
0.502 |
|
| 2015 |
Mitchell A, Bucchini F, Cochrane G, Denise H, Hoopen PT, Fraser M, Pesseat S, Potter S, Scheremetjew M, Sterk P, Finn RD. EBI metagenomics in 2016 - an expanding and evolving resource for the analysis and archiving of metagenomic data. Nucleic Acids Research. PMID 26582919 DOI: 10.1093/Nar/Gkv1195 |
0.492 |
|
| 2015 |
Ten Hoopen P, Pesant S, Kottmann R, Kopf A, Bicak M, Claus S, Deneudt K, Borremans C, Thijsse P, Dekeyzer S, Schaap DM, Bowler C, Glöckner FO, Cochrane G. Marine microbial biodiversity, bioinformatics and biotechnology (M2B3) data reporting and service standards. Standards in Genomic Sciences. 10: 20. PMID 26203332 DOI: 10.1186/S40793-015-0001-5 |
0.44 |
|
| 2015 |
Silvester N, Alako B, Amid C, Cerdeño-Tárraga A, Cleland I, Gibson R, Goodgame N, Ten Hoopen P, Kay S, Leinonen R, Li W, Liu X, Lopez R, Pakseresht N, Pallreddy S, ... ... Cochrane G, et al. Content discovery and retrieval services at the European Nucleotide Archive. Nucleic Acids Research. 43: D23-9. PMID 25404130 DOI: 10.1093/Nar/Gku1129 |
0.467 |
|
| 2015 |
Petrov AI, Kay SJE, Gibson R, Kulesha E, Staines D, Bruford EA, Wright MW, Burge S, Finn RD, Kersey PJ, Cochrane G, Bateman A, Griffiths-Jones S, Harrow J, et al. RNAcentral: an international database of ncRNA sequences. Nucleic Acids Research. 43: D123-9. PMID 25352543 DOI: 10.1093/Nar/Gku991 |
0.474 |
|
| 2014 |
Federhen S, Clark K, Barrett T, Parkinson H, Ostell J, Kodama Y, Mashima J, Nakamura Y, Cochrane G, Karsch-Mizrachi I. Toward richer metadata for microbial sequences: replacing strain-level NCBI taxonomy taxids with BioProject, BioSample and Assembly records. Standards in Genomic Sciences. 9: 1275-7. PMID 25197497 DOI: 10.4056/Sigs.4851102 |
0.399 |
|
| 2014 |
Field D, Sterk P, Kottmann R, De Smet JW, Amaral-Zettler L, Cochrane G, Cole JR, Davies N, Dawyndt P, Garrity GM, Gilbert JA, Glöckner FO, Hirschman L, Klenk HP, Knight R, et al. Genomic standards consortium projects. Standards in Genomic Sciences. 9: 599-601. PMID 25197446 DOI: 10.4056/Sigs.5559680 |
0.375 |
|
| 2014 |
Pakseresht N, Alako B, Amid C, Cerdeño-Tárraga A, Cleland I, Gibson R, Goodgame N, Gur T, Jang M, Kay S, Leinonen R, Li W, Liu X, Lopez R, McWilliam H, ... ... Cochrane G, et al. Assembly information services in the European Nucleotide Archive. Nucleic Acids Research. 42: D38-43. PMID 24214989 DOI: 10.1093/Nar/Gkt1082 |
0.484 |
|
| 2014 |
Hunter S, Corbett M, Denise H, Fraser M, Gonzalez-Beltran A, Hunter C, Jones P, Leinonen R, McAnulla C, Maguire E, Maslen J, Mitchell A, Nuka G, Oisel A, Pesseat S, ... ... Cochrane G, et al. EBI metagenomics--a new resource for the analysis and archiving of metagenomic data. Nucleic Acids Research. 42: D600-6. PMID 24165880 DOI: 10.1093/Nar/Gkt961 |
0.484 |
|
| 2013 |
Cochrane G, Alako B, Amid C, Bower L, Cerdeño-Tárraga A, Cleland I, Gibson R, Goodgame N, Jang M, Kay S, Leinonen R, Lin X, Lopez R, McWilliam H, Oisel A, et al. Facing growth in the European Nucleotide Archive. Nucleic Acids Research. 41: D30-5. PMID 23203883 DOI: 10.1093/Nar/Gks1175 |
0.49 |
|
| 2013 |
Nakamura Y, Cochrane G, Karsch-Mizrachi I. The International Nucleotide Sequence Database Collaboration. Nucleic Acids Research. 41: D21-4. PMID 23180798 DOI: 10.1093/nar/gks1084 |
0.36 |
|
| 2012 |
Cochrane G, Cook CE, Birney E. The future of DNA sequence archiving. Gigascience. 1: 2. PMID 23587147 DOI: 10.1186/2047-217X-1-2 |
0.442 |
|
| 2012 |
Robbins RJ, Cochrane G, Davies N, Dawyndt P, Kottmann R, Krishtalka LK, Morrison N, Tuama EÓ, San Gil I, Wooley J. RCN4GSC Workshop Report: Modeling a Testbed for Managing Data at the Interface of Biodiversity and (Meta)Genomics, April 2011. Standards in Genomic Sciences. 7: 153-8. PMID 23451293 DOI: 10.4056/Sigs.3146509 |
0.476 |
|
| 2012 |
Amid C, Birney E, Bower L, Cerdeño-Tárraga A, Cheng Y, Cleland I, Faruque N, Gibson R, Goodgame N, Hunter C, Jang M, Leinonen R, Liu X, Oisel A, Pakseresht N, ... ... Cochrane G, et al. Major submissions tool developments at the European Nucleotide Archive. Nucleic Acids Research. 40: D43-7. PMID 22080548 DOI: 10.1093/Nar/Gkr946 |
0.534 |
|
| 2012 |
Karsch-Mizrachi I, Nakamura Y, Cochrane G. The International Nucleotide Sequence Database Collaboration. Nucleic Acids Research. 40: D33-7. PMID 22080546 DOI: 10.1093/Nar/Gkr1006 |
0.521 |
|
| 2011 |
Bateman A, Agrawal S, Birney E, Bruford EA, Bujnicki JM, Cochrane G, Cole JR, Dinger ME, Enright AJ, Gardner PP, Gautheret D, Griffiths-Jones S, Harrow J, Herrero J, Holmes IH, et al. RNAcentral: A vision for an international database of RNA sequences. Rna (New York, N.Y.). 17: 1941-6. PMID 21940779 DOI: 10.1261/Rna.2750811 |
0.38 |
|
| 2011 |
Field D, Amaral-Zettler L, Cochrane G, Cole JR, Dawyndt P, Garrity GM, Gilbert J, Glöckner FO, Hirschman L, Karsch-Mizrachi I, Klenk HP, Knight R, Kottmann R, Kyrpides N, Meyer F, et al. The Genomic Standards Consortium. Plos Biology. 9: e1001088. PMID 21713030 DOI: 10.1371/Journal.Pbio.1001088 |
0.487 |
|
| 2011 |
Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, et al. Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nature Biotechnology. 29: 415-20. PMID 21552244 DOI: 10.1038/Nbt.1823 |
0.412 |
|
| 2011 |
Hsi-Yang Fritz M, Leinonen R, Cochrane G, Birney E. Efficient storage of high throughput DNA sequencing data using reference-based compression. Genome Research. 21: 734-40. PMID 21245279 DOI: 10.1101/Gr.114819.110 |
0.469 |
|
| 2011 |
Gaudet P, Bairoch A, Field D, Sansone SA, Taylor C, Attwood TK, Bateman A, Blake JA, Bult CJ, Cherry JM, Chisholm RL, Cochrane G, Cook CE, Eppig JT, Galperin MY, et al. Towards BioDBcore: a community-defined information specification for biological databases. Database : the Journal of Biological Databases and Curation. 2011: baq027. PMID 21205783 DOI: 10.1093/Database/Baq027 |
0.438 |
|
| 2011 |
Galperin MY, Cochrane GR. The 2011 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection. Nucleic Acids Research. 39: D1-6. PMID 21177655 DOI: 10.1093/nar/gkq1243 |
0.31 |
|
| 2011 |
Cochrane G, Karsch-Mizrachi I, Nakamura Y. The International Nucleotide Sequence Database Collaboration. Nucleic Acids Research. 39: D15-8. PMID 21106499 DOI: 10.1093/nar/gkq1150 |
0.36 |
|
| 2011 |
Gaudet P, Bairoch A, Field D, Sansone SA, Taylor C, Attwood TK, Bateman A, Blake JA, Bult CJ, Cherry JM, Chisholm RL, Cochrane G, Cook CE, Eppig JT, Galperin MY, et al. Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Research. 39: D7-10. PMID 21097465 DOI: 10.1093/Nar/Gkq1173 |
0.438 |
|
| 2011 |
Leinonen R, Akhtar R, Birney E, Bower L, Cerdeno-Tárraga A, Cheng Y, Cleland I, Faruque N, Goodgame N, Gibson R, Hoad G, Jang M, Pakseresht N, Plaister S, Radhakrishnan R, ... ... Cochrane G, et al. The European Nucleotide Archive. Nucleic Acids Research. 39: D28-31. PMID 20972220 DOI: 10.1093/Nar/Gkq967 |
0.503 |
|
| 2010 |
Field D, Sansone S, Delong EF, Sterk P, Friedberg I, Gaudet P, Lewis S, Kottmann R, Hirschman L, Garrity G, Cochrane G, Wooley J, Meyer F, Hunter S, White O, et al. Meeting Report: BioSharing at ISMB 2010. Standards in Genomic Sciences. 3: 254-8. PMID 21304729 DOI: 10.4056/Sigs/1403501 |
0.422 |
|
| 2010 |
Field D, Sansone S, Delong EF, Sterk P, Friedberg I, Kottmann R, Hirschman L, Garrity G, Cochrane G, Wooley J, Meyer F, Hunter S, White O. Meeting Report: Metagenomics, Metadata and MetaAnalysis (M3) at ISMB 2010. Standards in Genomic Sciences. 3: 232-4. PMID 21304724 DOI: 10.4056/Sigs.1383476 |
0.341 |
|
| 2010 |
Hirschman L, Sterk P, Field D, Wooley J, Cochrane G, Gilbert J, Kolker E, Kyrpides N, Meyer F, Mizrachi I, Nakamura Y, Sansone SA, Schriml L, Tatusova T, White O, et al. Meeting Report: "Metagenomics, Metadata and Meta-analysis" (M3) Workshop at the Pacific Symposium on Biocomputing 2010. Standards in Genomic Sciences. 2: 357-60. PMID 21304719 DOI: 10.4056/Sigs.802738 |
0.396 |
|
| 2010 |
Shumway M, Cochrane G, Sugawara H. Archiving next generation sequencing data. Nucleic Acids Research. 38: D870-1. PMID 19965774 DOI: 10.1093/Nar/Gkp1078 |
0.55 |
|
| 2010 |
Cochrane GR, Galperin MY. The 2010 Nucleic Acids Research Database Issue and online Database Collection: a community of data resources. Nucleic Acids Research. 38: D1-4. PMID 19965766 DOI: 10.1093/nar/gkp1077 |
0.376 |
|
| 2010 |
Leinonen R, Akhtar R, Birney E, Bonfield J, Bower L, Corbett M, Cheng Y, Demiralp F, Faruque N, Goodgame N, Gibson R, Hoad G, Hunter C, Jang M, Leonard S, ... ... Cochrane G, et al. Improvements to services at the European Nucleotide Archive. Nucleic Acids Research. 38: D39-45. PMID 19906712 DOI: 10.1093/Nar/Gkp998 |
0.549 |
|
| 2010 |
Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, et al. The “Minimum Information about an ENvironmental Sequence” (MIENS) specification Nature Precedings. 5: 1-1. DOI: 10.1038/Npre.2010.5252.1 |
0.408 |
|
| 2009 |
Field D, Friedberg I, Sterk P, Kottmann R, Glöckner FO, Hirschman L, Garrity GM, Cochrane G, Wooley J, Gilbert J. Meeting Report: "Metagenomics, Metadata and Meta-analysis" (M3) Special Interest Group at ISMB 2009. Standards in Genomic Sciences. 1: 278-82. PMID 21304668 DOI: 10.4056/Sigs.641096 |
0.355 |
|
| 2009 |
Cochrane G, Akhtar R, Bonfield J, Bower L, Demiralp F, Faruque N, Gibson R, Hoad G, Hubbard T, Hunter C, Jang M, Juhos S, Leinonen R, Leonard S, Lin Q, et al. Petabyte-scale innovations at the European Nucleotide Archive. Nucleic Acids Research. 37: D19-25. PMID 18978013 DOI: 10.1093/Nar/Gkn765 |
0.505 |
|
| 2008 |
Field D, Garrity GM, Sansone SA, Sterk P, Gray T, Kyrpides N, Hirschman L, Glöckner FO, Kottmann R, Angiuoli S, White O, Dawyndt P, Thomson N, Gil IS, Morrison N, ... ... Cochrane G, et al. Meeting report: the fifth Genomic Standards Consortium (GSC) workshop. Omics : a Journal of Integrative Biology. 12: 109-13. PMID 18564915 DOI: 10.1089/omi.2008.A3B3 |
0.368 |
|
| 2008 |
Field D, Glöckner FO, Garrity GM, Gray T, Sterk P, Cochrane G, Vaughan R, Kolker E, Kottmann R, Kyrpides N, Angiuoli S, Dawyndt P, Guralnick R, Goldstein P, Hall N, et al. Meeting report: the fourth Genomic Standards Consortium (GSC) workshop. Omics : a Journal of Integrative Biology. 12: 101-8. PMID 18564914 DOI: 10.1089/Omi.2008.0014 |
0.497 |
|
| 2008 |
Field D, Garrity G, Gray T, Morrison N, Selengut J, Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV, Ashburner M, Axelrod N, Baldauf S, Ballard S, Boore J, ... Cochrane G, et al. The minimum information about a genome sequence (MIGS) specification. Nature Biotechnology. 26: 541-7. PMID 18464787 DOI: 10.1038/Nbt1360 |
0.507 |
|
| 2008 |
Angiuoli SV, Gussman A, Klimke W, Cochrane G, Field D, Garrity G, Kodira CD, Kyrpides N, Madupu R, Markowitz V, Tatusova T, Thomson N, White O. Toward an online repository of Standard Operating Procedures (SOPs) for (meta)genomic annotation. Omics : a Journal of Integrative Biology. 12: 137-41. PMID 18416670 DOI: 10.1089/Omi.2008.0017 |
0.441 |
|
| 2008 |
Cochrane G, Akhtar R, Aldebert P, Althorpe N, Baldwin A, Bates K, Bhattacharyya S, Bonfield J, Bower L, Browne P, Castro M, Cox T, Demiralp F, Eberhardt R, Faruque N, et al. Priorities for nucleotide trace, sequence and annotation data capture at the Ensembl Trace Archive and the EMBL Nucleotide Sequence Database. Nucleic Acids Research. 36: D5-12. PMID 18039715 DOI: 10.1093/Nar/Gkm1018 |
0.528 |
|
| 2007 |
Kulikova T, Akhtar R, Aldebert P, Althorpe N, Andersson M, Baldwin A, Bates K, Bhattacharyya S, Bower L, Browne P, Castro M, Cochrane G, Duggan K, Eberhardt R, Faruque N, et al. EMBL Nucleotide Sequence Database in 2006. Nucleic Acids Research. 35: D16-20. PMID 17148479 DOI: 10.1093/Nar/Gkl913 |
0.554 |
|
| 2006 |
Morrison N, Cochrane G, Faruque N, Tatusova T, Tateno Y, Hancock D, Field D. Concept of sample in OMICS technology. Omics : a Journal of Integrative Biology. 10: 127-37. PMID 16901217 DOI: 10.1089/Omi.2006.10.127 |
0.403 |
|
| 2006 |
Cochrane G, Bates K, Apweiler R, Tateno Y, Mashima J, Kosuge T, Mizrachi IK, Schafer S, Fetchko M. Evidence standards in experimental and inferential INSDC Third Party Annotation data. Omics : a Journal of Integrative Biology. 10: 105-13. PMID 16901214 DOI: 10.1089/Omi.2006.10.105 |
0.483 |
|
| 2006 |
Cochrane G, Aldebert P, Althorpe N, Andersson M, Baker W, Baldwin A, Bates K, Bhattacharyya S, Browne P, van den Broek A, Castro M, Duggan K, Eberhardt R, Faruque N, Gamble J, et al. EMBL Nucleotide Sequence Database: developments in 2005. Nucleic Acids Research. 34: D10-5. PMID 16381823 DOI: 10.1093/Nar/Gkj130 |
0.572 |
|
| 2005 |
Kanz C, Aldebert P, Althorpe N, Baker W, Baldwin A, Bates K, Browne P, van den Broek A, Castro M, Cochrane G, Duggan K, Eberhardt R, Faruque N, Gamble J, Diez FG, et al. The EMBL Nucleotide Sequence Database. Nucleic Acids Research. 33: D29-33. PMID 15608199 DOI: 10.1093/nar/gki098 |
0.455 |
|
| 2004 |
Kulikova T, Aldebert P, Althorpe N, Baker W, Bates K, Browne P, van den Broek A, Cochrane G, Duggan K, Eberhardt R, Faruque N, Garcia-Pastor M, Harte N, Kanz C, Leinonen R, et al. The EMBL Nucleotide Sequence Database. Nucleic Acids Research. 32: D27-30. PMID 14681351 DOI: 10.1093/nar/gkh120 |
0.482 |
|
| 2004 |
Kulikova T, Aldebert P, Althorpe N, Baker W, Bates K, Browne P, Broek Avd, Cochrane G, Duggan K, Eberhardt RY, Faruque N, Garcia-Pastor M, Harte N, Kanz C, Leinonen R, et al. The EMBL Nucleotide Sequence Database Nucleic Acids Research. 25: 21-26. PMID 10592171 DOI: 10.1093/Nar/28.1.19 |
0.534 |
|
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