Alika K. Maunakea, Ph.D.

Biomedical Sciences University of California, San Francisco, San Francisco, CA 
Restriction Landmark Genomic Scanning (RLGS), CpG islands
"Alika Maunakea"


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Joseph Costello grad student 2008 UCSF
 (A conserved role for intragenic DNA methylation in cell context-specific gene regulation.)
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Corley MJ, Vargas-Maya N, Pang APS, et al. (2019) Epigenetic Delay in the Neurodevelopmental Trajectory of DNA Methylation States in Autism Spectrum Disorders. Frontiers in Genetics. 10: 907
Dye CK, Corley MJ, Li D, et al. (2019) Comparative DNA methylomic analyses reveal potential origins of novel epigenetic biomarkers of insulin resistance in monocytes from virally suppressed HIV-infected adults. Clinical Epigenetics. 11: 95
Park SL, Patel YM, Loo LWM, et al. (2018) Association of internal smoking dose with blood DNA methylation in three racial/ethnic populations. Clinical Epigenetics. 10: 110
Corley MJ, Dye C, D'Antoni ML, et al. (2016) Comparative DNA Methylation Profiling Reveals an Immunoepigenetic Signature of HIV-related Cognitive Impairment. Scientific Reports. 6: 33310
Pang AP, Sugai C, Maunakea AK. (2016) High-throughput sequencing offers new insights into 5-hydroxymethylcytosine. Biomolecular Concepts
Fong KS, Hufnagel RB, Khadka VS, et al. (2016) A mutation disrupting TET1 activity alters the expression of genes critical for neural tube closure in the tuft mouse. Disease Models & Mechanisms
Corley MJ, Zhang W, Zheng X, et al. (2015) Semiconductor-based sequencing of genome-wide DNA methylation states. Epigenetics : Official Journal of the Dna Methylation Society. 10: 153-66
Kraushaar DC, Jin W, Maunakea A, et al. (2013) Genome-wide incorporation dynamics reveal distinct categories of turnover for the histone variant H3.3. Genome Biology. 14: R121
Maunakea AK, Chepelev I, Cui K, et al. (2013) Intragenic DNA methylation modulates alternative splicing by recruiting MeCP2 to promote exon recognition Cell Research. 23: 1256-1269
Fu H, Maunakea AK, Martin MM, et al. (2013) Methylation of histone H3 on lysine 79 associates with a group of replication origins and helps limit DNA replication once per cell cycle. Plos Genetics. 9: e1003542
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