| Year |
Citation |
Score |
| 2024 |
Isaksen I, Jana S, Payne CM, Bissaro B, Røhr ÅK. The rotamer of the second sphere histidine in AA9 Lytic polysaccharide monooxygenase is pH-dependent. Biophysical Journal. PMID 38571309 DOI: 10.1016/j.bpj.2024.04.002 |
0.596 |
|
| 2022 |
Erickson E, Gado JE, Avilán L, Bratti F, Brizendine RK, Cox PA, Gill R, Graham R, Kim DJ, König G, Michener WE, Poudel S, Ramirez KJ, Shakespeare TJ, Zahn M, ... ... Payne CM, et al. Sourcing thermotolerant poly(ethylene terephthalate) hydrolase scaffolds from natural diversity. Nature Communications. 13: 7850. PMID 36543766 DOI: 10.1038/s41467-022-35237-x |
0.775 |
|
| 2022 |
Haataja T, Gado JE, Nutt A, Anderson NT, Nilsson M, Haddad Momeni M, Isaksson R, Väljamäe P, Johansson G, Payne CM, Ståhlberg J. Enzyme kinetics by GH7 cellobiohydrolases on chromogenic substrates is dictated by non-productive binding: Insights from crystal structures and MD simulation. The Febs Journal. PMID 35997626 DOI: 10.1111/febs.16602 |
0.825 |
|
| 2021 |
Gado JE, Harrison BE, Sandgren M, Ståhlberg J, Beckham GT, Payne CM. Machine learning reveals sequence-function relationships in family 7 glycoside hydrolases. The Journal of Biological Chemistry. 100931. PMID 34216620 DOI: 10.1016/j.jbc.2021.100931 |
0.788 |
|
| 2020 |
Knott BC, Erickson E, Allen MD, Gado JE, Graham R, Kearns FL, Pardo I, Topuzlu E, Anderson JJ, Austin HP, Dominick G, Johnson CW, Rorrer NA, Szostkiewicz CJ, Copié V, ... Payne CM, et al. Characterization and engineering of a two-enzyme system for plastics depolymerization. Proceedings of the National Academy of Sciences of the United States of America. PMID 32989159 DOI: 10.1073/pnas.2006753117 |
0.806 |
|
| 2020 |
Gado JE, Beckham GT, Payne CM. Improving Enzyme Optimum Temperature Prediction with Resampling Strategies and Ensemble Learning. Journal of Chemical Information and Modeling. PMID 32639729 DOI: 10.1021/Acs.Jcim.0C00489 |
0.753 |
|
| 2019 |
Yu Y, Mills LC, Englert DL, Payne CM. Inhibition Mechanisms of 2-Sulfinate Desulfinase (DszB). The Journal of Physical Chemistry. B. PMID 31545606 DOI: 10.1021/Acs.Jpcb.9B05252 |
0.789 |
|
| 2019 |
Machovina MM, Mallinson SJB, Knott BC, Meyers AW, Garcia-Borràs M, Bu L, Gado JE, Oliver A, Schmidt GP, Hinchen DJ, Crowley MF, Johnson CW, Neidle EL, Payne CM, Houk KN, et al. Enabling microbial syringol conversion through structure-guided protein engineering. Proceedings of the National Academy of Sciences of the United States of America. PMID 31235604 DOI: 10.1073/pnas.1820001116 |
0.777 |
|
| 2019 |
Hamre AG, Kaupang A, Payne CM, Väljamäe P, Sørlie M. Thermodynamic signatures of substrate binding for three Thermobifida fusca cellulases with different modes of action. Biochemistry. PMID 30785271 DOI: 10.1021/Acs.Biochem.9B00014 |
0.498 |
|
| 2019 |
Geronimo I, Ntarima P, Piens K, Gudmundsson M, Hansson H, Sandgren M, Payne CM. Kinetic and molecular dynamics study of inhibition and transglycosylation in family 3 β-glucosidases. The Journal of Biological Chemistry. PMID 30602567 DOI: 10.1074/Jbc.Ra118.007027 |
0.814 |
|
| 2019 |
Jana S, Hamre AG, Eijsink VGH, Sørlie M, Payne CM. Polar residues lining the binding cleft of a Serratia marcescens family 18 chitinase position the substrate for attack and stabilize associative interactions Molecular Physics. 117: 3664-3682. DOI: 10.1080/00268976.2019.1657600 |
0.659 |
|
| 2018 |
Kognole AA, Payne CM. Cellulose-specific Type B carbohydrate binding modules: understanding oligomeric and non-crystalline substrate recognition mechanisms. Biotechnology For Biofuels. 11: 319. PMID 30519283 DOI: 10.1186/S13068-018-1321-7 |
0.809 |
|
| 2018 |
Geronimo I, Payne CM, Sandgren M. Hydrolysis and Transglycosylation Transition States of Glycoside Hydrolase Family 3 β-Glucosidases Differ in Charge and Puckering Conformation. The Journal of Physical Chemistry. B. PMID 30247906 DOI: 10.1021/Acs.Jpcb.8B07118 |
0.773 |
|
| 2018 |
Geronimo I, Denning CA, Heidary DK, Glazer EC, Payne CM. Molecular Determinants of Substrate Affinity and Enzyme Activity of a Cytochrome P450 Variant. Biophysical Journal. PMID 30224054 DOI: 10.1016/J.Bpj.2018.08.026 |
0.801 |
|
| 2018 |
Liu B, Kognole AA, Wu M, Westereng B, Crowley MF, Kim S, Dimarogona M, Payne CM, Sandgren M. Structural and molecular dynamics studies of a C1-oxidizing lytic polysaccharide monooxygenase from Heterobasidion irregulare reveal amino acids important for substrate recognition. The Febs Journal. PMID 29660793 DOI: 10.1111/Febs.14472 |
0.819 |
|
| 2018 |
Borisova AS, Eneyskaya EV, Jana S, Badino SF, Kari J, Amore A, Karlsson M, Hansson H, Sandgren M, Himmel ME, Westh P, Payne CM, Kulminskaya AA, Ståhlberg J. Correlation of structure, function and protein dynamics in GH7 cellobiohydrolases from Trichoderma atroviride, T. reesei and T. harzianum. Biotechnology For Biofuels. 11: 5. PMID 29344086 DOI: 10.1186/S13068-017-1006-7 |
0.696 |
|
| 2018 |
Geronimo I, Payne CM, Sandgren M. The role of catalytic residue pKa on the hydrolysis/transglycosylation partition in family 3 β-glucosidases. Organic & Biomolecular Chemistry. 16: 316-324. PMID 29251740 DOI: 10.1039/C7Ob02558K |
0.772 |
|
| 2017 |
Geronimo I, Nigam SR, Payne CM. Desulfination by 2'-hydroxybiphenyl-2-sulfinate desulfinase proceeds electrophilic aromatic substitution by the cysteine-27 proton. Chemical Science. 8: 5078-5086. PMID 30155223 DOI: 10.1039/C7Sc00496F |
0.773 |
|
| 2017 |
Goedegebuur F, Dankmeyer L, Gualfetti P, Karkehabadi S, Hansson H, Jana S, Huynh V, Kelemen BR, Kruithof P, Larenas EA, Teunissen PJM, Ståhlberg J, Payne CM, Mitchinson C, Sandgren M. Improving the thermal stability of cellobiohydrolase Cel7A from Hypocrea jecorina by directed evolution. The Journal of Biological Chemistry. PMID 28860192 DOI: 10.1074/Jbc.M117.803270 |
0.66 |
|
| 2017 |
Kognole AA, Payne CM. Inhibition of mammalian glycoprotein YKL-40: identification of the physiological ligand. The Journal of Biological Chemistry. PMID 28053085 DOI: 10.1074/Jbc.M116.764985 |
0.783 |
|
| 2016 |
Yu Y, Fursule IA, Mills LC, Englert DL, Berron BJ, Payne CM. CHARMM force field parameters for 2'-hydroxybiphenyl-2-sulfinate, 2-hydroxybiphenyl, and related analogs. Journal of Molecular Graphics & Modelling. 72: 32-42. PMID 28027509 DOI: 10.1016/J.Jmgm.2016.12.005 |
0.748 |
|
| 2016 |
Geronimo I, Denning CA, Rogers WE, Othman T, Huxford T, Heidary DK, Glazer EC, Payne CM. Effect of Mutation and Substrate Binding on the Stability of Cytochrome P450BM3 Variants. Biochemistry. PMID 27267136 DOI: 10.1021/Acs.Biochem.6B00183 |
0.8 |
|
| 2016 |
Jana S, Hamre AG, Wildberger P, Holen MM, Eijsink VG, Beckham GT, Sørlie M, Payne CM. Aromatic-mediated Carbohydrate Recognition in Processive Serratia marcescens Chitinases. The Journal of Physical Chemistry. B. PMID 26824449 DOI: 10.1021/Acs.Jpcb.5B12610 |
0.784 |
|
| 2015 |
Wilkens C, Auger KD, Anderson NT, Meekins DA, Raththagala M, Abou Hachem M, Payne CM, Gentry MS, Svensson B. Plant α-glucan phosphatases SEX4 and LSF2 display different affinity for amylopectin and amylose. Febs Letters. PMID 26763114 DOI: 10.1002/1873-3468.12027 |
0.408 |
|
| 2015 |
Hamre AG, Jana S, Reppert NK, Payne CM, Sørlie M. Processivity, substrate positioning, and binding: The role of polar residues in a family 18 glycoside hydrolase. Biochemistry. PMID 26503416 DOI: 10.1021/Acs.Biochem.5B00830 |
0.719 |
|
| 2015 |
Borisova AS, Eneyskaya EV, Bobrov KS, Jana S, Logachev A, Polev DE, Lapidus AL, Ibatullin FM, Saleem U, Sandgren M, Payne CM, Kulminskaya AA, Ståhlberg J. Sequencing, biochemical characterization, crystal structure and molecular dynamics of Cellobiohydrolase Cel7A from Geotrichum candidum 3C. The Febs Journal. PMID 26367132 DOI: 10.1111/Febs.13509 |
0.706 |
|
| 2015 |
Borisova AS, Isaksen T, Dimarogona M, Kognole AA, Mathiesen G, Várnai A, Røhr ÅK, Payne CM, Sørlie M, Sandgren M, Eijsink VG. Structural and Functional Characterization of a Lytic Polysaccharide Monooxygenase with Broad Substrate Specificity. The Journal of Biological Chemistry. 290: 22955-69. PMID 26178376 DOI: 10.1074/Jbc.M115.660183 |
0.805 |
|
| 2015 |
Hamre AG, Jana S, Holen MM, Mathiesen G, Väljamäe P, Payne CM, Sørlie M. Thermodynamic Relationships with Processivity in Serratia marcescens Family 18 Chitinases. The Journal of Physical Chemistry. B. 119: 9601-13. PMID 26154587 DOI: 10.1021/Acs.Jpcb.5B03817 |
0.717 |
|
| 2015 |
Kognole AA, Payne CM. Cello-oligomer-binding dynamics and directionality in family 4 carbohydrate-binding modules. Glycobiology. 25: 1100-11. PMID 26153106 DOI: 10.1093/Glycob/Cwv048 |
0.804 |
|
| 2015 |
Vermaas JV, Crowley MF, Beckham GT, Payne CM. Effects of lytic polysaccharide monooxygenase oxidation on cellulose structure and binding of oxidized cellulose oligomers to cellulases. The Journal of Physical Chemistry. B. 119: 6129-43. PMID 25785779 DOI: 10.1021/Acs.Jpcb.5B00778 |
0.799 |
|
| 2015 |
Payne CM, Knott BC, Mayes HB, Hansson H, Himmel ME, Sandgren M, Ståhlberg J, Beckham GT. Fungal cellulases. Chemical Reviews. 115: 1308-448. PMID 25629559 DOI: 10.1021/cr500351c |
0.453 |
|
| 2014 |
Beckham GT, Ståhlberg J, Knott BC, Himmel ME, Crowley MF, Sandgren M, Sørlie M, Payne CM. Towards a molecular-level theory of carbohydrate processivity in glycoside hydrolases. Current Opinion in Biotechnology. 27: 96-106. PMID 24863902 DOI: 10.1016/J.Copbio.2013.12.002 |
0.709 |
|
| 2013 |
Payne CM, Jiang W, Shirts MR, Himmel ME, Crowley MF, Beckham GT. Glycoside hydrolase processivity is directly related to oligosaccharide binding free energy. Journal of the American Chemical Society. 135: 18831-9. PMID 24279927 DOI: 10.1021/Ja407287F |
0.741 |
|
| 2013 |
Payne CM, Resch MG, Chen L, Crowley MF, Himmel ME, Taylor LE, Sandgren M, Ståhlberg J, Stals I, Tan Z, Beckham GT. Glycosylated linkers in multimodular lignocellulose-degrading enzymes dynamically bind to cellulose. Proceedings of the National Academy of Sciences of the United States of America. 110: 14646-51. PMID 23959893 DOI: 10.1073/Pnas.1309106110 |
0.763 |
|
| 2013 |
Kushwaha R, Downie AB, Payne CM. Uses of phage display in agriculture: sequence analysis and comparative modeling of late embryogenesis abundant client proteins suggest protein-nucleic acid binding functionality. Computational and Mathematical Methods in Medicine. 2013: 470390. PMID 23956788 DOI: 10.1155/2013/470390 |
0.314 |
|
| 2013 |
Kern M, McGeehan JE, Streeter SD, Martin RN, Besser K, Elias L, Eborall W, Malyon GP, Payne CM, Himmel ME, Schnorr K, Beckham GT, Cragg SM, Bruce NC, McQueen-Mason SJ. Structural characterization of a unique marine animal family 7 cellobiohydrolase suggests a mechanism of cellulase salt tolerance. Proceedings of the National Academy of Sciences of the United States of America. 110: 10189-94. PMID 23733951 DOI: 10.1073/Pnas.1301502110 |
0.647 |
|
| 2013 |
Kushwaha R, Payne CM, Downie AB. Uses of phage display in agriculture: a review of food-related protein-protein interactions discovered by biopanning over diverse baits. Computational and Mathematical Methods in Medicine. 2013: 653759. PMID 23710253 DOI: 10.1155/2013/653759 |
0.333 |
|
| 2013 |
Taylor CB, Payne CM, Himmel ME, Crowley MF, McCabe C, Beckham GT. Binding site dynamics and aromatic-carbohydrate interactions in processive and non-processive family 7 glycoside hydrolases. The Journal of Physical Chemistry. B. 117: 4924-33. PMID 23534900 DOI: 10.1021/Jp401410H |
0.745 |
|
| 2013 |
Wu M, Beckham GT, Larsson AM, Ishida T, Kim S, Payne CM, Himmel ME, Crowley MF, Horn SJ, Westereng B, Igarashi K, Samejima M, Ståhlberg J, Eijsink VG, Sandgren M. Crystal structure and computational characterization of the lytic polysaccharide monooxygenase GH61D from the Basidiomycota fungus Phanerochaete chrysosporium. The Journal of Biological Chemistry. 288: 12828-39. PMID 23525113 DOI: 10.1074/Jbc.M113.459396 |
0.756 |
|
| 2013 |
Momeni MH, Payne CM, Hansson H, Mikkelsen NE, Svedberg J, Engström Å, Sandgren M, Beckham GT, Ståhlberg J. Structural, biochemical, and computational characterization of the glycoside hydrolase family 7 cellobiohydrolase of the tree-killing fungus Heterobasidion irregulare. The Journal of Biological Chemistry. 288: 5861-72. PMID 23303184 DOI: 10.1074/Jbc.M112.440891 |
0.681 |
|
| 2013 |
McGeehan JE, Streeter SD, Martin RNA, Etxabe A, Malyon GP, Cragg SM, Kern M, Besser K, Elias L, Eborall W, Bruce NC, McQueen-Mason SJ, Payne CM, Beckham GT, Himmel ME, et al. A novel cellulase for biofuels production: structure of a marine GH7 cellobiohydrolase Acta Crystallographica Section a Foundations of Crystallography. 69: s333-s334. DOI: 10.1107/S0108767313097110 |
0.53 |
|
| 2012 |
Sammond DW, Payne CM, Brunecky R, Himmel ME, Crowley MF, Beckham GT. Cellulase linkers are optimized based on domain type and function: insights from sequence analysis, biophysical measurements, and molecular simulation. Plos One. 7: e48615. PMID 23139804 DOI: 10.1371/Journal.Pone.0048615 |
0.705 |
|
| 2012 |
Payne CM, Baban J, Horn SJ, Backe PH, Arvai AS, Dalhus B, Bjørås M, Eijsink VG, Sørlie M, Beckham GT, Vaaje-Kolstad G. Hallmarks of processivity in glycoside hydrolases from crystallographic and computational studies of the Serratia marcescens chitinases. The Journal of Biological Chemistry. 287: 36322-30. PMID 22952223 DOI: 10.1074/Jbc.M112.402149 |
0.675 |
|
| 2012 |
Beckham GT, Dai Z, Matthews JF, Momany M, Payne CM, Adney WS, Baker SE, Himmel ME. Harnessing glycosylation to improve cellulase activity. Current Opinion in Biotechnology. 23: 338-45. PMID 22186222 DOI: 10.1016/J.Copbio.2011.11.030 |
0.623 |
|
| 2011 |
Payne CM, Bomble YJ, Taylor CB, McCabe C, Himmel ME, Crowley MF, Beckham GT. Multiple functions of aromatic-carbohydrate interactions in a processive cellulase examined with molecular simulation. The Journal of Biological Chemistry. 286: 41028-35. PMID 21965672 DOI: 10.1074/Jbc.M111.297713 |
0.769 |
|
| 2011 |
Payne CM, Himmel ME, Crowley MF, Beckham GT. Decrystallization of oligosaccharides from the cellulose Iβ surface with molecular simulation Journal of Physical Chemistry Letters. 2: 1546-1550. DOI: 10.1021/Jz2005122 |
0.675 |
|
| 2008 |
Payne CM, Zhao X, Cummings PT. Electrophoresis of ssDNA through nanoelectrode gaps from molecular dynamics: impact of gap width and chain length. The Journal of Physical Chemistry. B. 112: 12851-8. PMID 18783267 DOI: 10.1021/Jp802258V |
0.483 |
|
| 2008 |
Payne CM, Zhao X, Vlcek L, Cummings PT. Molecular dynamics simulation of ss-DNA translocation between copper nanoelectrodes incorporating electrode charge dynamics. The Journal of Physical Chemistry. B. 112: 1712-7. PMID 18211061 DOI: 10.1021/Jp077483E |
0.471 |
|
| 2008 |
Zhao X, Payne CM, Cummings PT. Controlled translocation of DNA segments through nanoelectrode gaps from molecular dynamics Journal of Physical Chemistry C. 112: 8-12. DOI: 10.1021/Jp709652Y |
0.377 |
|
| 2007 |
Zhao X, Payne CM, Cummings PT, Lee JW. Single-strand DNA molecule translocation through nanoelectrode gaps. Nanotechnology. 18: 424018. PMID 21730451 DOI: 10.1088/0957-4484/18/42/424018 |
0.44 |
|
| 2007 |
Payne CM, Zhao X, Cummings PT. Molecular simulations of DNA transport in solution Molecular Simulation. 33: 399-403. DOI: 10.1080/08927020601154355 |
0.454 |
|
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