| Year |
Citation |
Score |
| 2024 |
Tellier A, Hodgins K, Stephan W, Stukenbrock E. Rapid evolutionary adaptation: Potential and constraints. Molecular Ecology. e17350. PMID 38591817 DOI: 10.1111/mec.17350 |
0.629 |
|
| 2023 |
Eldon B, Stephan W. Sweepstakes reproduction facilitates rapid adaptation in highly fecund populations. Molecular Ecology. PMID 36896794 DOI: 10.1111/mec.16903 |
0.414 |
|
| 2022 |
Johri P, Aquadro CF, Beaumont M, Charlesworth B, Excoffier L, Eyre-Walker A, Keightley PD, Lynch M, McVean G, Payseur BA, Pfeifer SP, Stephan W, Jensen JD. Recommendations for improving statistical inference in population genomics. Plos Biology. 20: e3001669. PMID 35639797 DOI: 10.1371/journal.pbio.3001669 |
0.784 |
|
| 2022 |
Johri P, Stephan W, Jensen JD. Soft selective sweeps: Addressing new definitions, evaluating competing models, and interpreting empirical outliers. Plos Genetics. 18: e1010022. PMID 35202407 DOI: 10.1371/journal.pgen.1010022 |
0.629 |
|
| 2021 |
Stephan W. The classical hitchhiking model with continuous mutational pressure and purifying selection. Ecology and Evolution. 11: 15896-15904. PMID 34824798 DOI: 10.1002/ece3.8259 |
0.396 |
|
| 2021 |
Stephan W. Rapid Evolutionary Adaptation in Response to Selection on Quantitative Traits. Life (Basel, Switzerland). 11. PMID 34440541 DOI: 10.3390/life11080797 |
0.406 |
|
| 2020 |
Kapopoulou A, Kapun M, Pieper B, Pavlidis P, Wilches R, Duchen P, Stephan W, Laurent S. Demographic analyses of a new sample of haploid genomes from a Swedish population of Drosophila melanogaster. Scientific Reports. 10: 22415. PMID 33376238 DOI: 10.1038/s41598-020-79720-1 |
0.785 |
|
| 2020 |
Stephan W, John S. Polygenic Adaptation in a Population of Finite Size. Entropy (Basel, Switzerland). 22. PMID 33286676 DOI: 10.3390/e22080907 |
0.429 |
|
| 2020 |
John S, Stephan W. Important role of genetic drift in rapid polygenic adaptation. Ecology and Evolution. 10: 1278-1287. PMID 32076513 DOI: 10.1002/ece3.5981 |
0.397 |
|
| 2019 |
Živković D, John S, Verin M, Stephan W, Tellier A. Neutral genomic signatures of host-parasite coevolution. Bmc Evolutionary Biology. 19: 230. PMID 31856710 DOI: 10.1186/s12862-019-1556-3 |
0.725 |
|
| 2019 |
Stam R, Nosenko T, Hörger AC, Stephan W, Seidel M, Kuhn JMM, Haberer G, Tellier A. The Reference Genome and Transcriptome Assemblies of the Wild Tomato Species Highlights Birth and Death of NLR Genes Between Tomato Species. G3 (Bethesda, Md.). PMID 31604826 DOI: 10.1534/g3.119.400529 |
0.692 |
|
| 2019 |
Feurtey A, Stevens DM, Stephan W, Stukenbrock EH. Interspecific gene exchange introduces high genetic variability in crop pathogen. Genome Biology and Evolution. PMID 31603209 DOI: 10.1093/gbe/evz224 |
0.363 |
|
| 2019 |
Voigt S, Erpf AC, Stephan W. Decreased Temperature Sensitivity of Gene Expression in Temperate Populations of . Genes. 10. PMID 31261809 DOI: 10.3390/genes10070498 |
0.427 |
|
| 2019 |
Stephan W. Selective Sweeps. Genetics. 211: 5-13. PMID 30626638 DOI: 10.1534/genetics.118.301319 |
0.46 |
|
| 2018 |
Jensen JD, Payseur BA, Stephan W, Aquadro CF, Lynch M, Charlesworth D, Charlesworth B. The importance of the neutral theory in 1968 and 50 years on: a response to Kern & Hahn 2018. Evolution; International Journal of Organic Evolution. PMID 30460993 DOI: 10.1111/Evo.13650 |
0.627 |
|
| 2018 |
Böndel KB, Nosenko T, Stephan W. Signatures of natural selection in abiotic stress-responsive genes of Solanum chilense. Royal Society Open Science. 5: 171198. PMID 29410831 DOI: 10.1098/rsos.171198 |
0.43 |
|
| 2017 |
Eldon B, Stephan W. Evolution of highly fecund haploid populations. Theoretical Population Biology. PMID 29111301 DOI: 10.1016/j.tpb.2017.10.002 |
0.384 |
|
| 2017 |
Jain K, Stephan W. Modes of rapid polygenic adaptation. Molecular Biology and Evolution. PMID 28961935 DOI: 10.1093/molbev/msx240 |
0.484 |
|
| 2017 |
Jain K, Stephan W. Rapid Adaptation of a Polygenic Trait After a Sudden Environmental Shift. Genetics. PMID 28341654 DOI: 10.1534/genetics.116.196972 |
0.476 |
|
| 2017 |
Croze M, Wollstein A, Božičević V, Živković D, Stephan W, Hutter S. A genome-wide scan for genes under balancing selection in Drosophila melanogaster. Bmc Evolutionary Biology. 17: 15. PMID 28086750 DOI: 10.1186/s12862-016-0857-z |
0.462 |
|
| 2016 |
von Heckel K, Stephan W, Hutter S. Canalization of gene expression is a major signature of regulatory cold adaptation in temperate Drosophila melanogaster. Bmc Genomics. 17: 574. PMID 27502401 DOI: 10.1186/s12864-016-2866-0 |
0.474 |
|
| 2016 |
Croze M, Živković D, Stephan W, Hutter S. Balancing selection on immunity genes: review of the current literature and new analysis in Drosophila melanogaster. Zoology (Jena, Germany). PMID 27106015 DOI: 10.1016/j.zool.2016.03.004 |
0.442 |
|
| 2016 |
Nosenko T, Böndel KB, Kumpfmüller G, Stephan W. Adaptation to low temperatures in the wild tomato species Solanum chilense. Molecular Ecology. PMID 27037798 DOI: 10.1111/mec.13637 |
0.442 |
|
| 2015 |
Božičević V, Hutter S, Stephan W, Wollstein A. Population genetic evidence for cold adaptation in European Drosophila melanogaster populations. Molecular Ecology. PMID 26558479 DOI: 10.1111/mec.13464 |
0.508 |
|
| 2015 |
Kusumi J, Ichinose M, Takefu M, Piskol R, Stephan W, Iizuka M. A model of compensatory molecular evolution involving multiple sites in RNA molecules. Journal of Theoretical Biology. 388: 96-107. PMID 26506471 DOI: 10.1016/j.jtbi.2015.10.008 |
0.335 |
|
| 2015 |
Böndel KB, Lainer H, Nosenko T, Mboup M, Tellier A, Stephan W. North-South Colonization Associated with Local Adaptation of the Wild Tomato Species Solanum chilense. Molecular Biology and Evolution. 32: 2932-43. PMID 26232423 DOI: 10.1093/molbev/msv166 |
0.776 |
|
| 2015 |
Paparazzo F, Tellier A, Stephan W, Hutter S. Survival Rate and Transcriptional Response upon Infection with the Generalist Parasite Beauveria bassiana in a World-Wide Sample of Drosophila melanogaster. Plos One. 10: e0132129. PMID 26154519 DOI: 10.1371/journal.pone.0132129 |
0.723 |
|
| 2015 |
Stephan W. Signatures of positive selection: from selective sweeps at individual loci to subtle allele frequency changes in polygenic adaptation. Molecular Ecology. PMID 26108992 DOI: 10.1111/mec.13288 |
0.535 |
|
| 2015 |
Živkovi? D, Steinrücken M, Song YS, Stephan W. Transition Densities and Sample Frequency Spectra of Diffusion Processes with Selection and Variable Population Size. Genetics. 200: 601-17. PMID 25873633 DOI: 10.1534/Genetics.115.175265 |
0.468 |
|
| 2015 |
Voigt S, Laurent S, Litovchenko M, Stephan W. Positive Selection at the Polyhomeotic Locus Led to Decreased Thermosensitivity of Gene Expression in Temperate Drosophila melanogaster. Genetics. 200: 591-9. PMID 25855066 DOI: 10.1534/Genetics.115.177030 |
0.765 |
|
| 2015 |
Wollstein A, Stephan W. Inferring positive selection in humans from genomic data. Investigative Genetics. 6: 5. PMID 25834723 DOI: 10.1186/s13323-015-0023-1 |
0.503 |
|
| 2015 |
Jain K, Stephan W. Response of Polygenic Traits Under Stabilizing Selection and Mutation When Loci Have Unequal Effects. G3 (Bethesda, Md.). 5: 1065-74. PMID 25834214 DOI: 10.1534/g3.115.017970 |
0.457 |
|
| 2014 |
Wollstein A, Stephan W. Adaptive fixation in two-locus models of stabilizing selection and genetic drift. Genetics. 198: 685-97. PMID 25091496 DOI: 10.1534/genetics.114.168567 |
0.468 |
|
| 2014 |
Grzeskowiak L, Stephan W, Rose LE. Epistatic selection and coadaptation in the Prf resistance complex of wild tomato. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 27: 456-71. PMID 24997333 DOI: 10.1016/J.Meegid.2014.06.019 |
0.514 |
|
| 2014 |
Wilches R, Voigt S, Duchen P, Laurent S, Stephan W. Fine-mapping and selective sweep analysis of QTL for cold tolerance in Drosophila melanogaster. G3 (Bethesda, Md.). 4: 1635-45. PMID 24970882 DOI: 10.1534/G3.114.012757 |
0.791 |
|
| 2014 |
Tellier A, Moreno-Gámez S, Stephan W. Speed of adaptation and genomic footprints of host-parasite coevolution under arms race and trench warfare dynamics. Evolution; International Journal of Organic Evolution. 68: 2211-24. PMID 24749791 DOI: 10.1111/evo.12427 |
0.735 |
|
| 2013 |
Fischer I, Steige KA, Stephan W, Mboup M. Sequence evolution and expression regulation of stress-responsive genes in natural populations of wild tomato. Plos One. 8: e78182. PMID 24205149 DOI: 10.1371/journal.pone.0078182 |
0.522 |
|
| 2013 |
Werzner A, Pavlidis P, Ometto L, Stephan W, Laurent S. Selective sweep in the Flotillin-2 region of European Drosophila melanogaster. Plos One. 8: e56629. PMID 23437190 DOI: 10.1371/Journal.Pone.0056629 |
0.845 |
|
| 2013 |
Varzari A, Kharkov V, Nikitin AG, Raicu F, Simonova K, Stephan W, Weiss EH, Stepanov V. Paleo-Balkan and Slavic contributions to the genetic pool of Moldavians: insights from the Y chromosome. Plos One. 8: e53731. PMID 23341985 DOI: 10.1371/journal.pone.0053731 |
0.315 |
|
| 2013 |
Duchen P, Zivkovic D, Hutter S, Stephan W, Laurent S. Demographic inference reveals African and European admixture in the North American Drosophila melanogaster population. Genetics. 193: 291-301. PMID 23150605 DOI: 10.1534/Genetics.112.145912 |
0.766 |
|
| 2013 |
Moreno-Gámez S, Stephan W, Tellier A. Effect of disease prevalence and spatial heterogeneity on polymorphism maintenance in host-parasite interactions Plant Pathology. 62: 133-141. DOI: 10.1111/ppa.12131 |
0.694 |
|
| 2012 |
Hörger AC, Ilyas M, Stephan W, Tellier A, van der Hoorn RA, Rose LE. Balancing selection at the tomato RCR3 Guardee gene family maintains variation in strength of pathogen defense. Plos Genetics. 8: e1002813. PMID 22829777 DOI: 10.1371/Journal.Pgen.1002813 |
0.7 |
|
| 2012 |
Mboup M, Fischer I, Lainer H, Stephan W. Trans-species polymorphism and allele-specific expression in the CBF gene family of wild tomatoes. Molecular Biology and Evolution. 29: 3641-52. PMID 22787283 DOI: 10.1093/molbev/mss176 |
0.484 |
|
| 2012 |
Pavlidis P, Metzler D, Stephan W. Selective sweeps in multilocus models of quantitative traits. Genetics. 192: 225-39. PMID 22714406 DOI: 10.1534/genetics.112.142547 |
0.463 |
|
| 2012 |
Pavlidis P, Jensen JD, Stephan W, Stamatakis A. A critical assessment of storytelling: gene ontology categories and the importance of validating genomic scans. Molecular Biology and Evolution. 29: 3237-48. PMID 22617950 DOI: 10.1093/Molbev/Mss136 |
0.669 |
|
| 2011 |
Tellier A, Laurent SJ, Lainer H, Pavlidis P, Stephan W. Inference of seed bank parameters in two wild tomato species using ecological and genetic data. Proceedings of the National Academy of Sciences of the United States of America. 108: 17052-7. PMID 21949404 DOI: 10.1073/pnas.1111266108 |
0.805 |
|
| 2011 |
Rose LE, Grzeskowiak L, Hörger AC, Groth M, Stephan W. Targets of selection in a disease resistance network in wild tomatoes. Molecular Plant Pathology. 12: 921-7. PMID 21726387 DOI: 10.1111/J.1364-3703.2011.00720.X |
0.336 |
|
| 2011 |
Piskol R, Stephan W. The role of the effective population size in compensatory evolution. Genome Biology and Evolution. 3: 528-38. PMID 21680889 DOI: 10.1093/gbe/evr057 |
0.449 |
|
| 2011 |
Tellier A, Pfaffelhuber P, Haubold B, Naduvilezhath L, Rose LE, Städler T, Stephan W, Metzler D. Estimating parameters of speciation models based on refined summaries of the joint site-frequency spectrum. Plos One. 6: e18155. PMID 21637331 DOI: 10.1371/Journal.Pone.0018155 |
0.72 |
|
| 2011 |
Živkovi? D, Stephan W. Analytical results on the neutral non-equilibrium allele frequency spectrum based on diffusion theory. Theoretical Population Biology. 79: 184-91. PMID 21426909 DOI: 10.1016/j.tpb.2011.03.003 |
0.419 |
|
| 2011 |
Fischer I, Camus-Kulandaivelu L, Allal F, Stephan W. Adaptation to drought in two wild tomato species: the evolution of the Asr gene family. The New Phytologist. 190: 1032-44. PMID 21323928 DOI: 10.1111/j.1469-8137.2011.03648.x |
0.413 |
|
| 2011 |
Laurent SJ, Werzner A, Excoffier L, Stephan W. Approximate Bayesian analysis of Drosophila melanogaster polymorphism data reveals a recent colonization of Southeast Asia. Molecular Biology and Evolution. 28: 2041-51. PMID 21300986 DOI: 10.1093/Molbev/Msr031 |
0.784 |
|
| 2011 |
Müller L, Hutter S, Stamboliyska R, Saminadin-Peter SS, Stephan W, Parsch J. Population transcriptomics of Drosophila melanogaster females. Bmc Genomics. 12: 81. PMID 21276238 DOI: 10.1186/1471-2164-12-81 |
0.705 |
|
| 2011 |
Tellier A, Fischer I, Merino C, Xia H, Camus-Kulandaivelu L, Städler T, Stephan W. Fitness effects of derived deleterious mutations in four closely related wild tomato species with spatial structure. Heredity. 107: 189-99. PMID 21245893 DOI: 10.1038/hdy.2010.175 |
0.724 |
|
| 2011 |
Svetec N, Werzner A, Wilches R, Pavlidis P, Alvarez-Castro JM, Broman KW, Metzler D, Stephan W. Identification of X-linked quantitative trait loci affecting cold tolerance in Drosophila melanogaster and fine mapping by selective sweep analysis. Molecular Ecology. 20: 530-44. PMID 21199023 DOI: 10.1111/J.1365-294X.2010.04951.X |
0.787 |
|
| 2011 |
Piskol R, Stephan W. Selective constraints in conserved folded RNAs of drosophilid and hominid genomes. Molecular Biology and Evolution. 28: 1519-29. PMID 21172832 DOI: 10.1093/molbev/msq343 |
0.408 |
|
| 2010 |
Stephan W. Detecting strong positive selection in the genome. Molecular Ecology Resources. 10: 863-72. PMID 21565097 DOI: 10.1111/j.1755-0998.2010.02869.x |
0.513 |
|
| 2010 |
Pavlidis P, Laurent S, Stephan W. msABC: a modification of Hudson's ms to facilitate multi-locus ABC analysis. Molecular Ecology Resources. 10: 723-7. PMID 21565078 DOI: 10.1111/J.1755-0998.2010.02832.X |
0.745 |
|
| 2010 |
Xia H, Camus-Kulandaivelu L, Stephan W, Tellier A, Zhang Z. Nucleotide diversity patterns of local adaptation at drought-related candidate genes in wild tomatoes. Molecular Ecology. 19: 4144-54. PMID 20831645 DOI: 10.1111/j.1365-294X.2010.04762.x |
0.764 |
|
| 2010 |
Pavlidis P, Jensen JD, Stephan W. Searching for footprints of positive selection in whole-genome SNP data from nonequilibrium populations. Genetics. 185: 907-22. PMID 20407129 DOI: 10.1534/Genetics.110.116459 |
0.718 |
|
| 2010 |
Stephan W. Genetic hitchhiking versus background selection: the controversy and its implications. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365: 1245-53. PMID 20308100 DOI: 10.1098/rstb.2009.0278 |
0.518 |
|
| 2010 |
Hense W, Anderson N, Hutter S, Stephan W, Parsch J, Carlini DB. Experimentally increased codon bias in the Drosophila Adh gene leads to an increase in larval, but not adult, alcohol dehydrogenase activity. Genetics. 184: 547-55. PMID 19966063 DOI: 10.1534/Genetics.109.111294 |
0.686 |
|
| 2010 |
Stephan W, Städler T. Population genetics of speciation and demographic inference under population subdivision: Insights from studies on wild tomatoes (Solanum sect. Lycopersicon) Evolution in Action: Case Studies in Adaptive Radiation, Speciation and the Origin of Biodiversity. 119-135. DOI: 10.1007/978-3-642-12425-9_7 |
0.368 |
|
| 2009 |
Svetec N, Pavlidis P, Stephan W. Recent strong positive selection on Drosophila melanogaster HDAC6, a gene encoding a stress surveillance factor, as revealed by population genomic analysis. Molecular Biology and Evolution. 26: 1549-56. PMID 19349642 DOI: 10.1093/Molbev/Msp065 |
0.806 |
|
| 2009 |
Städler T, Haubold B, Merino C, Stephan W, Pfaffelhuber P. The impact of sampling schemes on the site frequency spectrum in nonequilibrium subdivided populations. Genetics. 182: 205-16. PMID 19237689 DOI: 10.1534/Genetics.108.094904 |
0.35 |
|
| 2009 |
Varzari A, Kharkov V, Stephan W, Dergachev V, Puzyrev V, Weiss EH, Stepanov V. Searching for the origin of Gagauzes: inferences from Y-chromosome analysis. American Journal of Human Biology : the Official Journal of the Human Biology Council. 21: 326-36. PMID 19107901 DOI: 10.1002/ajhb.20863 |
0.439 |
|
| 2008 |
Piskol R, Stephan W. Analyzing the evolution of RNA secondary structures in vertebrate introns using Kimura's model of compensatory fitness interactions. Molecular Biology and Evolution. 25: 2483-92. PMID 18775900 DOI: 10.1093/molbev/msn195 |
0.306 |
|
| 2008 |
Eck S, Stephan W. Determining the relationship of gene expression and global mRNA stability in Drosophila melanogaster and Escherichia coli using linear models. Gene. 424: 102-7. PMID 18755255 DOI: 10.1016/j.gene.2008.07.033 |
0.337 |
|
| 2008 |
Pavlidis P, Hutter S, Stephan W. A population genomic approach to map recent positive selection in model species. Molecular Ecology. 17: 3585-98. PMID 18627454 DOI: 10.1111/j.1365-294X.2008.03852.x |
0.492 |
|
| 2008 |
Pfaffelhuber P, Lehnert A, Stephan W. Linkage disequilibrium under genetic hitchhiking in finite populations. Genetics. 179: 527-37. PMID 18493069 DOI: 10.1534/genetics.107.081497 |
0.508 |
|
| 2008 |
Schug MD, Baines JF, Killon-Atwood A, Mohanty S, Das A, Grath S, Smith SG, Zargham S, McEvey SF, Stephan W. Evolution of mating isolation between populations of Drosophila ananassae. Molecular Ecology. 17: 2706-21. PMID 18466237 DOI: 10.1111/J.1365-294X.2008.03770.X |
0.733 |
|
| 2008 |
Beisswanger S, Stephan W. Evidence that strong positive selection drives neofunctionalization in the tandemly duplicated polyhomeotic genes in Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 105: 5447-52. PMID 18381818 DOI: 10.1073/pnas.0710892105 |
0.395 |
|
| 2008 |
Riebler A, Held L, Stephan W. Bayesian variable selection for detecting adaptive genomic differences among populations. Genetics. 178: 1817-29. PMID 18245358 DOI: 10.1534/genetics.107.081281 |
0.462 |
|
| 2008 |
Hutter S, Saminadin-Peter SS, Stephan W, Parsch J. Gene expression variation in African and European populations of Drosophila melanogaster. Genome Biology. 9: R12. PMID 18208589 DOI: 10.1186/Gb-2008-9-1-R12 |
0.743 |
|
| 2008 |
Städler T, Arunyawat U, Stephan W. Population genetics of speciation in two closely related wild tomatoes (Solanum section Lycopersicon). Genetics. 178: 339-50. PMID 18202377 DOI: 10.1534/genetics.107.081810 |
0.521 |
|
| 2008 |
Stephan W. Population genetics: Adaptation and selection | Populationsgenetik: Adaptation und selektion Biospektrum. 14: 255-257. |
0.358 |
|
| 2007 |
Ramos-Onsins SE, Mousset S, Mitchell-Olds T, Stephan W. Population genetic inference using a fixed number of segregating sites: a reassessment. Genetical Research. 89: 231-44. PMID 18208629 DOI: 10.1017/S0016672307008877 |
0.59 |
|
| 2007 |
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, ... ... Stephan W, et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-18. PMID 17994087 DOI: 10.1038/Nature06341 |
0.814 |
|
| 2007 |
Arunyawat U, Stephan W, Städler T. Using multilocus sequence data to assess population structure, natural selection, and linkage disequilibrium in wild tomatoes. Molecular Biology and Evolution. 24: 2310-22. PMID 17675653 DOI: 10.1093/molbev/msm162 |
0.553 |
|
| 2007 |
Hutter S, Li H, Beisswanger S, De Lorenzo D, Stephan W. Distinctly different sex ratios in African and European populations of Drosophila melanogaster inferred from chromosomewide single nucleotide polymorphism data. Genetics. 177: 469-80. PMID 17660560 DOI: 10.1534/genetics.107.074922 |
0.826 |
|
| 2007 |
Varzari A, Stephan W, Stepanov V, Raicu F, Cojocaru R, Roschin Y, Glavce C, Dergachev V, Spiridonova M, Schmidt HD, Weiss E. Population history of the Dniester-Carpathians: evidence from Alu markers. Journal of Human Genetics. 52: 308-16. PMID 17387576 DOI: 10.1007/s10038-007-0113-x |
0.513 |
|
| 2007 |
Presgraves DC, Stephan W. Pervasive adaptive evolution among interactors of the Drosophila hybrid inviability gene, Nup96. Molecular Biology and Evolution. 24: 306-14. PMID 17056646 DOI: 10.1093/molbev/msl157 |
0.424 |
|
| 2007 |
Stephan W, Li H. The recent demographic and adaptive history of Drosophila melanogaster. Heredity. 98: 65-8. PMID 17006533 DOI: 10.1038/sj.hdy.6800901 |
0.562 |
|
| 2006 |
Ometto L, De Lorenzo D, Stephan W. Contrasting patterns of sequence divergence and base composition between Drosophila introns and intergenic regions. Biology Letters. 2: 604-7. PMID 17148300 DOI: 10.1098/Rsbl.2006.0521 |
0.8 |
|
| 2006 |
Li H, Stephan W. Inferring the demographic history and rate of adaptive substitution in Drosophila. Plos Genetics. 2: e166. PMID 17040129 DOI: 10.1371/journal.pgen.0020166 |
0.552 |
|
| 2006 |
Glinka S, De Lorenzo D, Stephan W. Evidence of gene conversion associated with a selective sweep in Drosophila melanogaster. Molecular Biology and Evolution. 23: 1869-78. PMID 16868022 DOI: 10.1093/Molbev/Msl069 |
0.835 |
|
| 2006 |
Stephan W, Song YS, Langley CH. The hitchhiking effect on linkage disequilibrium between linked neutral loci. Genetics. 172: 2647-63. PMID 16452153 DOI: 10.1534/Genetics.105.050179 |
0.649 |
|
| 2006 |
Beisswanger S, Stephan W, De Lorenzo D. Evidence for a selective sweep in the wapl region of Drosophila melanogaster. Genetics. 172: 265-74. PMID 16204208 DOI: 10.1534/genetics.105.049346 |
0.836 |
|
| 2006 |
Stephan W. Noncoding Tandemly Repeated DNA Sequences Reviews in Cell Biology and Molecular Medicine. DOI: 10.1002/3527600906.Mcb.200400009 |
0.386 |
|
| 2005 |
Glinka S, Stephan W, Das A. Homogeneity of common cosmopolitan inversion frequencies in Southeast Asian Drosophila melanogaster. Journal of Genetics. 84: 173-8. PMID 16131716 DOI: 10.1007/Bf02715842 |
0.837 |
|
| 2005 |
Roselius K, Stephan W, Städler T. The relationship of nucleotide polymorphism, recombination rate and selection in wild tomato species. Genetics. 171: 753-63. PMID 16085701 DOI: 10.1534/genetics.105.043877 |
0.501 |
|
| 2005 |
Städler T, Roselius K, Stephan W. Genealogical footprints of speciation processes in wild tomatoes: demography and evidence for historical gene flow. Evolution; International Journal of Organic Evolution. 59: 1268-79. PMID 16050103 DOI: 10.1111/J.0014-3820.2005.Tb01777.X |
0.53 |
|
| 2005 |
Stenøien HK, Stephan W. Global mRNA stability is not associated with levels of gene expression in Drosophila melanogaster but shows a negative correlation with codon bias. Journal of Molecular Evolution. 61: 306-14. PMID 16044249 DOI: 10.1007/s00239-004-0271-9 |
0.344 |
|
| 2005 |
Ometto L, Glinka S, De Lorenzo D, Stephan W. Inferring the effects of demography and selection on Drosophila melanogaster populations from a chromosome-wide scan of DNA variation. Molecular Biology and Evolution. 22: 2119-30. PMID 15987874 DOI: 10.1093/Molbev/Msi207 |
0.824 |
|
| 2005 |
Li H, Stephan W. Maximum-likelihood methods for detecting recent positive selection and localizing the selected site in the genome. Genetics. 171: 377-84. PMID 15972464 DOI: 10.1534/genetics.105.041368 |
0.488 |
|
| 2005 |
Ometto L, Stephan W, De Lorenzo D. Insertion/deletion and nucleotide polymorphism data reveal constraints in Drosophila melanogaster introns and intergenic regions. Genetics. 169: 1521-7. PMID 15654088 DOI: 10.1534/Genetics.104.037689 |
0.809 |
|
| 2004 |
Baines JF, Das A, Mousset S, Stephan W. The role of natural selection in genetic differentiation of worldwide populations of Drosophila ananassae. Genetics. 168: 1987-98. PMID 15611169 DOI: 10.1534/genetics.104.027482 |
0.751 |
|
| 2004 |
Das A, Mohanty S, Stephan W. Inferring the population structure and demography of Drosophila ananassae from multilocus data. Genetics. 168: 1975-85. PMID 15611168 DOI: 10.1534/Genetics.104.031567 |
0.745 |
|
| 2004 |
Baines JF, Parsch J, Stephan W. Pleiotropic effect of disrupting a conserved sequence involved in a long-range compensatory interaction in the Drosophila Adh gene. Genetics. 166: 237-42. PMID 15020421 DOI: 10.1534/Genetics.166.1.237 |
0.691 |
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| 2003 |
Vogl C, Das A, Beaumont M, Mohanty S, Stephan W. Population subdivision and molecular sequence variation: theory and analysis of Drosophila ananassae data. Genetics. 165: 1385-95. PMID 14668389 |
0.729 |
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| 2003 |
Glinka S, Ometto L, Mousset S, Stephan W, De Lorenzo D. Demography and natural selection have shaped genetic variation in Drosophila melanogaster: a multi-locus approach. Genetics. 165: 1269-78. PMID 14668381 |
0.83 |
|
| 2003 |
Chen Y, Stephan W. Compensatory evolution of a precursor messenger RNA secondary structure in the Drosophila melanogaster Adh gene. Proceedings of the National Academy of Sciences of the United States of America. 100: 11499-504. PMID 12972637 DOI: 10.1073/pnas.1932834100 |
0.387 |
|
| 2003 |
Kim Y, Stephan W. Selective sweeps in the presence of interference among partially linked loci. Genetics. 164: 389-98. PMID 12750349 |
0.574 |
|
| 2003 |
Carlini DB, Stephan W. In vivo introduction of unpreferred synonymous codons into the Drosophila Adh gene results in reduced levels of ADH protein. Genetics. 163: 239-43. PMID 12586711 |
0.339 |
|
| 2002 |
Baines JF, Chen Y, Das A, Stephan W. DNA sequence variation at a duplicated gene: excess of replacement polymorphism and extensive haplotype structure in the Drosophila melanogaster bicoid region. Molecular Biology and Evolution. 19: 989-98. PMID 12082119 DOI: 10.1093/Oxfordjournals.Molbev.A004179 |
0.722 |
|
| 2002 |
Kim Y, Stephan W. Detecting a local signature of genetic hitchhiking along a recombining chromosome. Genetics. 160: 765-77. PMID 11861577 |
0.565 |
|
| 2001 |
Innan H, Stephan W. Selection intensity against deleterious mutations in RNA secondary structures and rate of compensatory nucleotide substitutions. Genetics. 159: 389-99. PMID 11560913 |
0.331 |
|
| 2001 |
Baudry E, Kerdelhué C, Innan H, Stephan W. Species and recombination effects on DNA variability in the tomato genus. Genetics. 158: 1725-35. PMID 11514458 |
0.341 |
|
| 2000 |
Parsch J, Russell JA, Beerman I, Hartl DL, Stephan W. Deletion of a conserved regulatory element in the Drosophila Adh gene leads to increased alcohol dehydrogenase activity but also delays development. Genetics. 156: 219-27. PMID 10978287 |
0.649 |
|
| 2000 |
Kim Y, Stephan W. Joint effects of genetic hitchhiking and background selection on neutral variation. Genetics. 155: 1415-27. PMID 10880499 |
0.567 |
|
| 2000 |
Chen Y, Marsh BJ, Stephan W. Joint effects of natural selection and recombination on gene flow between Drosophila ananassae populations. Genetics. 155: 1185-94. PMID 10880480 |
0.473 |
|
| 2000 |
Parsch J, Braverman JM, Stephan W. Comparative sequence analysis and patterns of covariation in RNA secondary structures. Genetics. 154: 909-21. PMID 10655240 |
0.614 |
|
| 1999 |
Chen Y, Carlini DB, Baines JF, Parsch J, Braverman JM, Tanda S, Stephan W. RNA secondary structure and compensatory evolution. Genes & Genetic Systems. 74: 271-86. PMID 10791023 DOI: 10.1266/Ggs.74.271 |
0.675 |
|
| 1999 |
Begun DJ, Betancourt AJ, Langley CH, Stephan W. Is the fast/slow allozyme variation at the Adh locus of Drosophila melanogaster an ancient balanced polymorphism? Molecular Biology and Evolution. 16: 1816-9. PMID 10605124 DOI: 10.1093/Oxfordjournals.Molbev.A026095 |
0.834 |
|
| 1999 |
Parsch J, Stephan W, Tanda S. A highly conserved sequence in the 3'-untranslated region of the drosophila Adh gene plays a functional role in Adh expression. Genetics. 151: 667-74. PMID 9927459 |
0.679 |
|
| 1999 |
Glenn TC, Stephan W, Braun MJ. Effects of a population bottleneck on Whooping Crane mitochondrial DNA variation Conservation Biology. 13: 1097-1107. DOI: 10.1046/J.1523-1739.1999.97527.X |
0.45 |
|
| 1999 |
Stephan W, Charlesworth B, McVean G. The effect of background selection at a single locus on weakly selected, partially linked variants Genetical Research. 73: 133-146. DOI: 10.1017/S0016672399003705 |
0.608 |
|
| 1999 |
Kim Y, Stephan W. Allele frequency changes in artificial selection experiments: Statistical power and precision of QTL mapping Genetical Research. 73: 177-184. DOI: 10.1017/S0016672398003711 |
0.592 |
|
| 1998 |
Stephan W, Langley CH. DNA polymorphism in lycopersicon and crossing-over per physical length. Genetics. 150: 1585-93. PMID 9832534 |
0.587 |
|
| 1998 |
Stephan W, Kim Y. Persistence of microsatellite arrays in finite populations. Molecular Biology and Evolution. 15: 1332-6. PMID 9787438 DOI: 10.1093/Oxfordjournals.Molbev.A025861 |
0.617 |
|
| 1998 |
Parsch J, Stephan W, Tanda S. Long-range base pairing in Drosophila and human mRNA sequences. Molecular Biology and Evolution. 15: 820-6. PMID 9656483 DOI: 10.1093/Oxfordjournals.Molbev.A025987 |
0.658 |
|
| 1998 |
Stephan W, Xing L, Kirby DA, Braverman JM. A test of the background selection hypothesis based on nucleotide data from Drosophila ananassae. Proceedings of the National Academy of Sciences of the United States of America. 95: 5649-54. PMID 9576938 DOI: 10.1073/pnas.95.10.5649 |
0.538 |
|
| 1997 |
Perlitz M, Stephan W. The mean and variance of the number of segregating sites since the last hitchhiking event. Journal of Mathematical Biology. 36: 1-23. PMID 9440302 DOI: 10.1007/S002850050087 |
0.463 |
|
| 1997 |
Parsch J, Tanda S, Stephan W. Site-directed mutations reveal long-range compensatory interactions in the Adh gene of Drosophila melanogaster. Proceedings of the National Academy of Sciences of the United States of America. 94: 928-33. PMID 9023359 DOI: 10.1073/Pnas.94.3.928 |
0.674 |
|
| 1996 |
Kirby DA, Stephan W. Multi-locus selection and the structure of variation at the white gene of Drosophila melanogaster. Genetics. 144: 635-45. PMID 8889526 |
0.414 |
|
| 1996 |
Glenn TC, Stephan W, Dessauer HC, Braun MJ. Allelic diversity in alligator microsatellite loci is negatively correlated with GC content of flanking sequences and evolutionary conservation of PCR amplifiability. Molecular Biology and Evolution. 13: 1151-4. PMID 8865669 DOI: 10.1093/Oxfordjournals.Molbev.A025678 |
0.44 |
|
| 1995 |
Kirby DA, Stephan W. Haplotype test reveals departure from neutrality in a segment of the white gene of Drosophila melanogaster. Genetics. 141: 1483-90. PMID 8601488 |
0.351 |
|
| 1995 |
Stephan W. Perturbation analysis of a two-locus model with directional selection and recombination. Journal of Mathematical Biology. 34: 95-109. PMID 8568423 DOI: 10.1007/Bf00180138 |
0.388 |
|
| 1995 |
Kirby DA, Muse SV, Stephan W. Maintenance of pre-mRNA secondary structure by epistatic selection. Proceedings of the National Academy of Sciences of the United States of America. 92: 9047-51. PMID 7568070 DOI: 10.1073/pnas.92.20.9047 |
0.432 |
|
| 1995 |
Braverman JM, Hudson RR, Kaplan NL, Langley CH, Stephan W. The hitchhiking effect on the site frequency spectrum of DNA polymorphisms. Genetics. 140: 783-96. PMID 7498754 |
0.598 |
|
| 1994 |
Charlesworth B, Sniegowski P, Stephan W. The evolutionary dynamics of repetitive DNA in eukaryotes. Nature. 371: 215-20. PMID 8078581 DOI: 10.1038/371215A0 |
0.747 |
|
| 1994 |
Stephan W, Rodriguez VS, Zhou B, Parsch J. Molecular evolution of the metallothionein gene Mtn in the melanogaster species group: results from Drosophila ananassae. Genetics. 138: 135-43. PMID 8001781 |
0.69 |
|
| 1993 |
Stephan W, Chao L, Smale JG. The advance of Muller's ratchet in a haploid asexual population: approximate solutions based on diffusion theory. Genetical Research. 61: 225-31. PMID 8365659 DOI: 10.1017/S0016672300031384 |
0.323 |
|
| 1993 |
Wiehe TH, Stephan W. Analysis of a genetic hitchhiking model, and its application to DNA polymorphism data from Drosophila melanogaster. Molecular Biology and Evolution. 10: 842-54. PMID 8355603 DOI: 10.1093/Oxfordjournals.Molbev.A040046 |
0.727 |
|
| 1992 |
Stephan W, Langley CH. Evolutionary consequences of DNA mismatch inhibited repair opportunity. Genetics. 132: 567-74. PMID 1427043 |
0.617 |
|
| 1992 |
Stephan W, Mitchell SJ. Reduced levels of DNA polymorphism and fixed between-population differences in the centromeric region of Drosophila ananassae. Genetics. 132: 1039-45. PMID 1360932 |
0.466 |
|
| 1992 |
Stephan W, Wiehe THE, Lenz MW. The effect of strongly selected substitutions on neutral polymorphism: Analytical results based on diffusion theory Theoretical Population Biology. 41: 237-254. DOI: 10.1016/0040-5809(92)90045-U |
0.706 |
|
| 1991 |
Stephan W. Molecular genetic variation in the centromeric region of the X chromosome in three Drosophila ananassae populations. II. The Om(1D) locus. Molecular Biology and Evolution. 6: 624-35. PMID 2577362 DOI: 10.1093/OXFORDJOURNALS.MOLBEV.A040580 |
0.423 |
|
| 1986 |
Charlesworth B, Langley CH, Stephan W. The evolution of restricted recombination and the accumulation of repeated DNA sequences. Genetics. 112: 947-62. PMID 3957013 |
0.666 |
|
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