Barun Mathema, Ph.D. - Publications

Affiliations: 
2010 Columbia University, New York, NY 
Area:
Epidemiology, Microbiology Biology, Public Health

120 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Nimmo C, Bionghi N, Cummings MJ, Perumal R, Hopson M, Al Jubaer S, Naidoo K, Wolf A, Mathema B, Larsen MH, O'Donnell M. Opportunities and limitations of genomics for diagnosing bedaquiline-resistant tuberculosis: a systematic review and individual isolate meta-analysis. The Lancet. Microbe. PMID 38215766 DOI: 10.1016/S2666-5247(23)00317-8  0.36
2023 Brown TS, Tang L, Omar SV, Joseph L, Meintjes G, Maartens G, Wasserman S, Shah NS, Farhat MR, Gandhi NR, Ismail N, Brust JCM, Mathema B. Genotype-Phenotype Characterization of Serial Mycobacterium tuberculosis Isolates in Bedaquiline-Resistant Tuberculosis. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 37874928 DOI: 10.1093/cid/ciad596  0.444
2023 Bobba S, Howard NC, Das S, Ahmed M, Tang L, Thirunavukkarasu S, Larsen MH, Mathema B, Divangahi M, Khader SA. carrying the rifampicin drug-resistance-conferring mutation H445Y is associated with suppressed immunity through type I interferons. Mbio. e0094623. PMID 37682004 DOI: 10.1128/mbio.00946-23  0.395
2023 Nimmo C, Bionghi N, Cummings MJ, Perumal R, Hopson M, Al Jubaer S, Wolf A, Mathema B, Larsen MH, O'Donnell M. Opportunities and limitations of genomics for diagnosing bedaquiline-resistant tuberculosis: an individual isolate meta-analysis. Medrxiv : the Preprint Server For Health Sciences. PMID 37205550 DOI: 10.1101/2023.05.04.23289023  0.326
2023 Wang L, Chen B, Zhou H, Mathema B, Chen L, Li X, Lu Y, Liu Z, Wang X, Wang W. Emergence and evolution of drug-resistant Mycobacterium tuberculosis in eastern China: A six-year prospective study. Genomics. 110640. PMID 37187254 DOI: 10.1016/j.ygeno.2023.110640  0.438
2022 Walter KS, Dos Santos PCP, Gonçalves TO, da Silva BO, da Silva Santos A, de Cássia Leite A, da Silva AM, Figueira Moreira FM, de Oliveira RD, Lemos EF, Cunha E, Liu YE, Ko AI, Colijn C, Cohen T, ... Mathema B, et al. The role of prisons in disseminating tuberculosis in Brazil: A genomic epidemiology study. Lancet Regional Health. Americas. 9. PMID 35647574 DOI: 10.1016/j.lana.2022.100186  0.326
2022 Brown TS, Robinson DA, Buckee CO, Mathema B. Connecting the dots: understanding how human mobility shapes TB epidemics. Trends in Microbiology. PMID 35597716 DOI: 10.1016/j.tim.2022.04.005  0.411
2022 Naidoo K, Moodley MC, Hassan-Moosa R, Dookie N, Yende-Zuma N, Perumal R, Dawood H, Mvelase NR, Mathema B, Karim SA. Recurrent subclinical tuberculosis among ART accessing participants: Incidence, clinical course, and outcomes. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 35247054 DOI: 10.1093/cid/ciac185  0.334
2021 Brown TS, Eldholm V, Brynildsrud O, Osnes M, Levy N, Stimson J, Colijn C, Alexandru S, Noroc E, Ciobanu N, Crudu V, Cohen T, Mathema B. Evolution and emergence of multidrug-resistant in Chisinau, Moldova. Microbial Genomics. 7. PMID 34431762 DOI: 10.1099/mgen.0.000620  0.44
2020 O'Donnell M, Mathema B. Operational Research on the Treatment of Drug-resistant Tuberculosis: Exciting Results that Need to be Protected. American Journal of Respiratory and Critical Care Medicine. PMID 32822207 DOI: 10.1164/Rccm.202007-2974Ed  0.405
2020 Nelson KN, Gandhi NR, Mathema B, Lopman BA, Brust JCM, Auld SC, Ismail N, Omar SV, Brown TS, Allana S, Campbell A, Moodley P, Mlisana K, Shah NS, Jenness SM. Modeling Missing Cases and Transmission Links in Networks of Extensively Drug-Resistant Tuberculosis in KwaZulu-Natal, South Africa. American Journal of Epidemiology. PMID 32242216 DOI: 10.1093/Aje/Kwaa028  0.438
2020 Wang EY, Arrazola RA, Mathema B, Ahluwalia IB, Mase SR. The impact of smoking on tuberculosis treatment outcomes: a meta-analysis. The International Journal of Tuberculosis and Lung Disease : the Official Journal of the International Union Against Tuberculosis and Lung Disease. 24: 170-175. PMID 32127100 DOI: 10.5588/Ijtld.19.0002  0.307
2020 Tadokera R, Bekker LG, Kreiswirth BN, Mathema B, Middelkoop K. TB transmission is associated with prolonged stay in a low socio-economic, high burdened TB and HIV community in Cape Town, South Africa. Bmc Infectious Diseases. 20: 120. PMID 32041530 DOI: 10.1186/S12879-020-4828-Z  0.432
2019 Brown TS, Challagundla L, Baugh EH, Omar SV, Mustaev A, Auld SC, Shah NS, Kreiswirth BN, Brust JCM, Nelson KN, Narechania A, Kurepina N, Mlisana K, Bonneau R, Eldholm V, ... ... Mathema B, et al. Pre-detection history of extensively drug-resistant tuberculosis in KwaZulu-Natal, South Africa. Proceedings of the National Academy of Sciences of the United States of America. PMID 31659018 DOI: 10.1073/Pnas.1906636116  0.544
2019 Wolf A, Padayatchi N, Naidoo K, Master I, Mathema B, O'Donnell MR. Spatial Temporal Clustering of Multi- and Extensively Drug Resistant Tuberculosis is Associated with HIV Status and Drug-susceptibility Pattern in KwaZulu-Natal, South Africa. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 31538648 DOI: 10.1093/Cid/Ciz913  0.44
2019 Nelson KN, Jenness SM, Mathema B, Lopman BA, Auld SC, Shah NS, Brust JCM, Ismail N, Omar SV, Brown TS, Allana S, Campbell A, Moodley P, Mlisana K, Gandhi NR. Social mixing and clinical features linked with transmission in a network of extensively drug-resistant (XDR) tuberculosis cases in KwaZulu-Natal, South Africa. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 31342067 DOI: 10.1093/Cid/Ciz636  0.502
2019 Peterson ML, Gandhi NR, Clennon J, Nelson KN, Morris N, Ismail N, Allana S, Campbell A, Brust JCM, Auld SC, Mathema B, Mlisana K, Moodley P, Shah NS. Extensively drug-resistant tuberculosis 'hotspots' and sociodemographic associations in Durban, South Africa. The International Journal of Tuberculosis and Lung Disease : the Official Journal of the International Union Against Tuberculosis and Lung Disease. 23: 720-727. PMID 31315705 DOI: 10.5588/Ijtld.18.0575  0.483
2019 Sun J, Chen C, Cui CY, Zhang Y, Liu X, Cui ZH, Ma XY, Feng Y, Fang LX, Lian XL, Zhang RM, Tang YZ, Zhang KX, Liu HM, Zhuang ZH, ... ... Mathema B, et al. Plasmid-encoded tet(X) genes that confer high-level tigecycline resistance in Escherichia coli. Nature Microbiology. PMID 31235960 DOI: 10.1038/S41564-019-0496-4  0.395
2019 O'Donnell MR, Larsen MH, Brown TS, Jain P, Munsamy V, Wolf A, Uccellini L, Karim F, de Oliveira T, Mathema B, Jacobs WR, Pym A. Erratum for O'Donnell et al., "Early Detection of Emergent Extensively Drug-Resistant Tuberculosis by Flow Cytometry-Based Phenotyping and Whole-Genome Sequencing". Antimicrobial Agents and Chemotherapy. 63. PMID 31126923 DOI: 10.1128/Aac.00764-19  0.376
2019 Dixit A, Freschi L, Vargas R, Calderon R, Sacchettini J, Drobniewski F, Galea JT, Contreras C, Yataco R, Zhang Z, Lecca L, Kolokotronis SO, Mathema B, Farhat MR. Whole genome sequencing identifies bacterial factors affecting transmission of multidrug-resistant tuberculosis in a high-prevalence setting. Scientific Reports. 9: 5602. PMID 30944370 DOI: 10.1038/S41598-019-41967-8  0.48
2019 Pandey R, Chen L, Manca C, Jenkins S, Glaser L, Vinnard C, Stone G, Lee J, Mathema B, Nuermberger EL, Bonomo RA, Kreiswirth BN. Dual β-Lactam Combinations Highly Active against Mycobacterium abscessus Complex . Mbio. 10. PMID 30755518 DOI: 10.1128/Mbio.02895-18  0.36
2019 Stimson J, Gardy J, Mathema B, Crudu V, Cohen T, Colijn C. Beyond the SNP threshold: identifying outbreak clusters using inferred transmissions. Molecular Biology and Evolution. PMID 30690464 DOI: 10.1093/Molbev/Msy242  0.34
2019 Mabud TS, de Lourdes Delgado Alves M, Ko AI, Basu S, Walter KS, Cohen T, Mathema B, Colijn C, Lemos E, Croda J, Andrews JR. Evaluating strategies for control of tuberculosis in prisons and prevention of spillover into communities: An observational and modeling study from Brazil. Plos Medicine. 16: e1002737. PMID 30677013 DOI: 10.1371/Journal.Pmed.1002737  0.42
2019 O'Donnell MR, Larsen MH, Brown TS, Jain P, Munsamy V, Wolf A, Uccellini L, Karim F, D'Olivera T, Mathema B, Jacobs WR, Pym A. Early detection of emergent extensively drug resistant tuberculosis (XDR-TB) by flow cytometry-based phenotyping and whole genome sequencing. Antimicrobial Agents and Chemotherapy. PMID 30670422 DOI: 10.1128/Aac.01834-18  0.513
2018 Cudahy PGT, Andrews JR, Bilinski A, Dowdy DW, Mathema B, Menzies NA, Salomon JA, Shrestha S, Cohen T. Spatially targeted screening to reduce tuberculosis transmission in high-incidence settings. The Lancet. Infectious Diseases. PMID 30554997 DOI: 10.1016/S1473-3099(18)30443-2  0.423
2018 Khan PY, Yates TA, Osman M, Warren RM, van der Heijden Y, Padayatchi N, Nardell EA, Moore D, Mathema B, Gandhi N, Eldholm V, Dheda K, Hesseling AC, Mizrahi V, Rustomjee R, et al. Transmission of drug-resistant tuberculosis in HIV-endemic settings. The Lancet. Infectious Diseases. PMID 30554996 DOI: 10.1016/S1473-3099(18)30537-1  0.505
2018 Wiens KE, Woyczynski LP, Ledesma JR, Ross JM, Zenteno-Cuevas R, Goodridge A, Ullah I, Mathema B, Djoba Siawaya JF, Biehl MH, Ray SE, Bhattacharjee NV, Henry NJ, Reiner RC, Kyu HH, et al. Global variation in bacterial strains that cause tuberculosis disease: a systematic review and meta-analysis. Bmc Medicine. 16: 196. PMID 30373589 DOI: 10.1186/S12916-018-1180-X  0.464
2018 Brynildsrud OB, Pepperell CS, Suffys P, Grandjean L, Monteserin J, Debech N, Bohlin J, Alfsnes K, Pettersson JO, Kirkeleite I, Fandinho F, da Silva MA, Perdigao J, Portugal I, Viveiros M, ... ... Mathema B, et al. Global expansion of lineage 4 shaped by colonial migration and local adaptation. Science Advances. 4: eaat5869. PMID 30345355 DOI: 10.1126/Sciadv.Aat5869  0.451
2018 Howard NC, Marin ND, Ahmed M, Rosa BA, Martin J, Bambouskova M, Sergushichev A, Loginicheva E, Kurepina N, Rangel-Moreno J, Chen L, Kreiswirth BN, Klein RS, Balada-Llasat JM, Torrelles JB, ... ... Mathema B, et al. Publisher Correction: Mycobacterium tuberculosis carrying a rifampicin drug resistance mutation reprograms macrophage metabolism through cell wall lipid changes. Nature Microbiology. PMID 30327492 DOI: 10.1038/S41564-018-0281-9  0.339
2018 Howard NC, Marin ND, Ahmed M, Rosa BA, Martin J, Bambouskova M, Sergushichev A, Loginicheva E, Kurepina N, Rangel-Moreno J, Chen L, Kreiswirth BN, Klein RS, Balada-Llasat JM, Torrelles JB, ... ... Mathema B, et al. Mycobacterium tuberculosis carrying a rifampicin drug resistance mutation reprograms macrophage metabolism through cell wall lipid changes. Nature Microbiology. PMID 30224802 DOI: 10.1038/S41564-018-0245-0  0.498
2018 Yuengling KA, Padayatchi N, Wolf A, Mathema B, Brown T, Horsburgh CR, O'Donnell MR. Effect of Antiretroviral Therapy on Treatment Outcomes in a Prospective Study of Extensively Drug Resistant Tuberculosis (XDR-TB) HIV Co-Infection Treatment in KwaZulu-Natal, South Africa. Journal of Acquired Immune Deficiency Syndromes (1999). PMID 30212394 DOI: 10.1097/Qai.0000000000001833  0.484
2018 Auld SC, Sarita Shah N, Mathema B, Brown TS, Ismail N, Omar SV, Brust JCM, Nelson KN, Allana S, Campbell A, Mlisana K, Moodley P, Gandhi NR. XDR tuberculosis in South Africa: genomic evidence supporting transmission in communities. The European Respiratory Journal. PMID 30115614 DOI: 10.1183/13993003.00246-2018  0.409
2018 Cummings MJ, Tokarz R, Bakamutumaho B, Kayiwa J, Byaruhanga T, Owor N, Namagambo B, Wolf A, Mathema B, Lutwama JJ, Schluger NW, Lipkin WI, O'Donnell MR. Precision surveillance for viral respiratory pathogens: virome capture sequencing for the detection and genomic characterization of severe acute respiratory infection in Uganda. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 30099510 DOI: 10.1093/Cid/Ciy656  0.537
2018 Nelson KN, Shah NS, Mathema B, Ismail N, Brust JCM, Brown TS, Auld SC, Omar SV, Morris N, Campbell A, Allana S, Moodley P, Mlisana K, Gandhi NR. Spatial Patterns of Extensively drug-resistant Tuberculosis (XDR-tuberculosis) transmission in KwaZulu-Natal, South Africa. The Journal of Infectious Diseases. PMID 29961879 DOI: 10.1093/Infdis/Jiy394  0.466
2018 Thain N, Le C, Crossa A, Ahuja SD, Meissner JS, Mathema B, Kreiswirth B, Kurepina N, Cohen T, Chindelevitch L. Towards better prediction of Mycobacterium tuberculosis lineages from MIRU-VNTR data. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. PMID 29960078 DOI: 10.1016/J.Meegid.2018.06.029  0.321
2017 Churchyard G, Kim P, Shah NS, Rustomjee R, Gandhi N, Mathema B, Dowdy D, Kasmar A, Cardenas V. What We Know About Tuberculosis Transmission: An Overview. The Journal of Infectious Diseases. 216: S629-S635. PMID 29112747 DOI: 10.1093/Infdis/Jix362  0.477
2017 Mathema B, Andrews JR, Cohen T, Borgdorff MW, Behr M, Glynn JR, Rustomjee R, Silk BJ, Wood R. Drivers of Tuberculosis Transmission. The Journal of Infectious Diseases. 216: S644-S653. PMID 29112745 DOI: 10.1093/Infdis/Jix354  0.486
2017 Auld SC, Kasmar AG, Dowdy DW, Mathema B, Gandhi NR, Churchyard GJ, Rustomjee R, Shah NS. Research Roadmap for Tuberculosis Transmission Science: Where Do We Go From Here and How Will We Know When We're There? The Journal of Infectious Diseases. 216: S662-S668. PMID 29112744 DOI: 10.1093/Infdis/Jix353  0.454
2017 Chandramuki A, Khanna N, Shashkina E, Kurepina N, Mathema B, Kreiswirth BN, Venkataswamy MM. Genotypic characterisation of Mycobacterium tuberculosis isolates from tuberculous meningitis patients at a tertiary neurocare centre in Southern India. Indian Journal of Medical Microbiology. 35: 211-215. PMID 28681808 DOI: 10.4103/Ijmm.Ijmm_16_166  0.511
2017 Kelly AM, Mathema B, Larson EL. Carbapenem-resistant Enterobacteriaceae in the community: a scoping review. International Journal of Antimicrobial Agents. PMID 28647532 DOI: 10.1016/J.Ijantimicag.2017.03.012  0.346
2017 Bablishvili N, Tukvadze N, Shashkina E, Mathema B, Gandhi NR, Blumberg HM, Kempker RR. The impact of gyrB and eis mutations in improving second-line drug resistance detection among Mycobacterium tuberculosis isolates from Georgia. Antimicrobial Agents and Chemotherapy. PMID 28630205 DOI: 10.1128/Aac.01921-16  0.421
2017 Sullivan SB, Austin ED, Stump S, Mathema B, Whittier S, Lowy FD, Uhlemann AC. Reduced vancomycin susceptibility of methicillin-susceptible Staphylococcus aureus: no significant impact on mortality but increase in complicated infection. Antimicrobial Agents and Chemotherapy. PMID 28507105 DOI: 10.1128/Aac.00316-17  0.375
2017 Simpson G, Zimmerman R, Shashkina E, Chen L, Richard M, Bradford CM, Dragoo GA, Saiers RL, Peloquin CA, Daley CL, Planet P, Narachenia A, Mathema B, Kreiswirth BN. Mycobacterium tuberculosis Infection among Asian Elephants in Captivity. Emerging Infectious Diseases. 23: 513-516. PMID 28221115 DOI: 10.3201/Eid2303.160726  0.458
2017 Allana S, Shashkina E, Mathema B, Bablishvili N, Tukvadze N, Shah NS, Kempker RR, Blumberg HM, Moodley P, Mlisana K, Brust JC, Gandhi NR. pncA Gene Mutations Associated with Pyrazinamide Resistance in Drug-Resistant Tuberculosis, South Africa and Georgia. Emerging Infectious Diseases. 23: 491-495. PMID 28221108 DOI: 10.3201/Eid2303.161034  0.493
2017 Satlin MJ, Chen L, Patel G, Gomez-Simmonds A, Weston G, Kim AC, Seo SK, Rosenthal ME, Sperber SJ, Jenkins SG, Hamula CL, Uhlemann AC, Levi MH, Fries BC, Tang YW, ... ... Mathema B, et al. Bacteremia due to Carbapenem-resistant Enterobacteriaceae (CRE): A Multicenter Clinical and Molecular Epidemiologic Analysis in the Nation's Epicenter for CRE. Antimicrobial Agents and Chemotherapy. PMID 28167547 DOI: 10.1128/Aac.02349-16  0.382
2017 Shah NS, Auld SC, Brust JC, Mathema B, Ismail N, Moodley P, Mlisana K, Allana S, Campbell A, Mthiyane T, Morris N, Mpangase P, van der Meulen H, Omar SV, Brown TS, et al. Transmission of Extensively Drug-Resistant Tuberculosis in South Africa. The New England Journal of Medicine. 376: 243-253. PMID 28099825 DOI: 10.1056/Nejmoa1604544  0.549
2016 Brown TS, Narechania A, Walker JR, Planet PJ, Bifani PJ, Kolokotronis SO, Kreiswirth BN, Mathema B. Genomic epidemiology of Lineage 4 Mycobacterium tuberculosis subpopulations in New York city and New Jersey, 1999-2009. Bmc Genomics. 17: 947. PMID 27871225 DOI: 10.1186/s12864-016-3298-6  0.44
2016 Planet PJ, Narechania A, Chen L, Mathema B, Boundy S, Archer G, Kreiswirth B. Architecture of a Species: Phylogenomics of Staphylococcus aureus. Trends in Microbiology. PMID 27751626 DOI: 10.1016/J.Tim.2016.09.009  0.37
2016 Mediavilla JR, Patrawalla A, Chen L, Chavda KD, Mathema B, Vinnard C, Dever LL, Kreiswirth BN. Colistin- and Carbapenem-Resistant Escherichia coli Harboring mcr-1 and blaNDM-5, Causing a Complicated Urinary Tract Infection in a Patient from the United States. Mbio. 7. PMID 27578755 DOI: 10.1128/Mbio.01191-16  0.441
2016 Hu Y, Mathema B, Zhao Q, Zheng X, Li D, Jiang W, Wang W, Xu B. Comparison of the socio-demographic and clinical features of pulmonary TB patients infected with sub-lineages within the W-Beijing and non-Beijing Mycobacterium tuberculosis. Tuberculosis (Edinburgh, Scotland). 97: 18-25. PMID 26980491 DOI: 10.1016/J.Tube.2015.11.007  0.524
2015 Kasaie P, Mathema B, Kelton WD, Azman AS, Pennington J, Dowdy DW. A Novel Tool Improves Existing Estimates of Recent Tuberculosis Transmission in Settings of Sparse Data Collection. Plos One. 10: e0144137. PMID 26679499 DOI: 10.1371/Journal.Pone.0144137  0.374
2015 Hu Y, Mathema B, Zhao Q, Chen L, Lu W, Wang W, Kreiswirth B, Xu B. Acquisition of second line drug resistance and extensively drug resistance during recent transmission of M. tuberculosis in rural China. Clinical Microbiology and Infection : the Official Publication of the European Society of Clinical Microbiology and Infectious Diseases. PMID 26348262 DOI: 10.1016/J.Cmi.2015.08.023  0.537
2015 Niehaus AJ, Mlisana K, Gandhi NR, Mathema B, Brust JC. High Prevalence of inhA Promoter Mutations among Patients with Drug-Resistant Tuberculosis in KwaZulu-Natal, South Africa. Plos One. 10: e0135003. PMID 26332235 DOI: 10.1371/Journal.Pone.0135003  0.48
2015 Verdugo D, Fallows D, Ahuja S, Schluger N, Kreiswirth B, Mathema B. Epidemiologic Correlates of Pyrazinamide-Resistant Mycobacterium tuberculosis in New York City. Antimicrobial Agents and Chemotherapy. 59: 6140-50. PMID 26195530 DOI: 10.1128/Aac.00764-15  0.678
2015 Haver HL, Chua A, Ghode P, Lakshminarayana SB, Singhal A, Mathema B, Wintjens R, Bifani P. Mutations in Genes for the F420 Biosynthetic Pathway and a Nitroreductase Enzyme Are the Primary Resistance Determinants in Spontaneous In Vitro-Selected PA-824-Resistant Mutants of Mycobacterium tuberculosis. Antimicrobial Agents and Chemotherapy. 59: 5316-23. PMID 26100695 DOI: 10.1128/Aac.00308-15  0.462
2015 O?Donnell MR, Pillay M, Pillay M, Werner L, Master I, Wolf A, Mathema B, Coovadia YM, Mlisana K, Horsburgh CR, Padayatchi N. Primary Capreomycin Resistance Is Common and Associated With Early Mortality in Patients With Extensively Drug-Resistant Tuberculosis in KwaZulu-Natal, South Africa. Journal of Acquired Immune Deficiency Syndromes (1999). 69: 536-43. PMID 25886924 DOI: 10.1097/Qai.0000000000000650  0.536
2015 Mathema B, Lewis JJ, Connors J, Chihota VN, Shashkina E, van der Meulen M, Graviss EA, Ha NP, Kreiswirth BN, Grant AD, Fielding KL, Dorman SE, Churchyard GJ. Molecular epidemiology of Mycobacterium tuberculosis among South African gold miners. Annals of the American Thoracic Society. 12: 12-20. PMID 25419914 DOI: 10.1513/Annalsats.201404-150Oc  0.457
2015 Middelkoop K, Mathema B, Whitelaw A, Bekker LG, Wood R. Reply to Yates et al. The Journal of Infectious Diseases. 211: 1510-1. PMID 25387580 DOI: 10.1093/Infdis/Jiu629  0.4
2015 Middelkoop K, Mathema B, Myer L, Shashkina E, Whitelaw A, Kaplan G, Kreiswirth B, Wood R, Bekker LG. Transmission of tuberculosis in a South African community with a high prevalence of HIV infection. The Journal of Infectious Diseases. 211: 53-61. PMID 25053739 DOI: 10.1093/Infdis/Jiu403  0.391
2015 Satlin M, Chen L, Patel G, Gomez-Simmonds A, Weston G, Kim A, Seo S, Rosenthal M, Sperber S, Jenkins S, Uhlemann A, Levi M, Fries B, Tang Y, Juretschko S, ... ... Mathema B, et al. Bacteremia due to Carbapenem-Resistant Enterobacteriaceae (CRE) in New York and New Jersey: A Clinical and Molecular Epidemiologic Analysis Open Forum Infectious Diseases. 2. DOI: 10.1093/Ofid/Ofv131.149  0.355
2014 Chen L, Mathema B, Chavda KD, DeLeo FR, Bonomo RA, Kreiswirth BN. Carbapenemase-producing Klebsiella pneumoniae: molecular and genetic decoding. Trends in Microbiology. 22: 686-96. PMID 25304194 DOI: 10.1016/J.Tim.2014.09.003  0.326
2014 Dowdy DW, Azman AS, Kendall EA, Mathema B. Transforming the fight against tuberculosis: targeting catalysts of transmission. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 59: 1123-9. PMID 24982034 DOI: 10.1093/Cid/Ciu506  0.351
2014 Chen L, Mathema B, Pitout JD, DeLeo FR, Kreiswirth BN. Epidemic Klebsiella pneumoniae ST258 is a hybrid strain. Mbio. 5: e01355-14. PMID 24961694 DOI: 10.1128/Mbio.01355-14  0.381
2014 Wang W, Mathema B, Hu Y, Zhao Q, Jiang W, Xu B. Role of casual contacts in the recent transmission of tuberculosis in settings with high disease burden Clinical Microbiology and Infection. 20: 1140-1145. PMID 24941878 DOI: 10.1111/1469-0691.12726  0.449
2014 Parker D, Narechania A, Sebra R, Deikus G, Larussa S, Ryan C, Smith H, Prince A, Mathema B, Ratner AJ, Kreiswirth B, Planet PJ. Genome Sequence of Bacterial Interference Strain Staphylococcus aureus 502A. Genome Announcements. 2. PMID 24723721 DOI: 10.1128/Genomea.00284-14  0.303
2014 Deleo FR, Chen L, Porcella SF, Martens CA, Kobayashi SD, Porter AR, Chavda KD, Jacobs MR, Mathema B, Olsen RJ, Bonomo RA, Musser JM, Kreiswirth BN. Molecular dissection of the evolution of carbapenem-resistant multilocus sequence type 258 Klebsiella pneumoniae. Proceedings of the National Academy of Sciences of the United States of America. 111: 4988-93. PMID 24639510 DOI: 10.1073/Pnas.1321364111  0.433
2014 Middelkoop K, Bekker LG, Mathema B, Myer L, Shashkina E, Whitelaw A, Kurepina N, Kaplan G, Kreiswirth B, Wood R. Factors affecting tuberculosis strain success over 10 years in a high TB- and HIV-burdened community. International Journal of Epidemiology. 43: 1114-22. PMID 24609068 DOI: 10.1093/Ije/Dyu044  0.454
2014 Allana S, Mathema B, Brust J, Mthiyane T, Mlisana K, Moodley P, Shah S, Gandhi N. 1474Genotypic Characterization of pncA Gene in Patients with Multidrug-resistant Tuberculosis from South Africa Open Forum Infectious Diseases. 1. DOI: 10.1093/Ofid/Ofu052.1020  0.526
2013 Chen L, Chavda KD, Solanki M, Mediavilla JR, Mathema B, Schlievert PM, Kreiswirth BN. Genetic variation among Panton-Valentine leukocidin-encoding bacteriophages in Staphylococcus aureus clonal complex 30 strains. Journal of Clinical Microbiology. 51: 914-9. PMID 23284024 DOI: 10.1128/Jcm.03015-12  0.398
2013 Gandhi NR, Weissman D, Moodley P, Ramathal M, Elson I, Kreiswirth BN, Mathema B, Shashkina E, Rothenberg R, Moll AP, Friedland G, Sturm AW, Shah NS. Nosocomial transmission of extensively drug-resistant tuberculosis in a rural hospital in South Africa. The Journal of Infectious Diseases. 207: 9-17. PMID 23166374 DOI: 10.1093/Infdis/Jis631  0.518
2012 Mediavilla JR, Chen L, Mathema B, Kreiswirth BN. Global epidemiology of community-associated methicillin resistant Staphylococcus aureus (CA-MRSA). Current Opinion in Microbiology. 15: 588-95. PMID 23044073 DOI: 10.1016/J.Mib.2012.08.003  0.388
2012 Joshi D, Harris NB, Waters R, Thacker T, Mathema B, Krieswirth B, Sreevatsan S. Single nucleotide polymorphisms in the Mycobacterium bovis genome resolve phylogenetic relationships. Journal of Clinical Microbiology. 50: 3853-61. PMID 22993186 DOI: 10.1128/Jcm.01499-12  0.406
2012 Smyth DS, Kafer JM, Wasserman GA, Velickovic L, Mathema B, Holzman RS, Knipe TA, Becker K, von Eiff C, Peters G, Chen L, Kreiswirth BN, Novick RP, Shopsin B. Nasal carriage as a source of agr-defective Staphylococcus aureus bacteremia. The Journal of Infectious Diseases. 206: 1168-77. PMID 22859823 DOI: 10.1093/Infdis/Jis483  0.327
2012 Wang W, Hu Y, Mathema B, Jiang W, Kreiswirth B, Xu B. Recent transmission of W-Beijing family Mycobacterium tuberculosis in rural eastern China International Journal of Tuberculosis and Lung Disease. 16: 306-311. PMID 22640443 DOI: 10.5588/ijtld.11.0304  0.391
2012 Mathema B, Kurepina N, Yang G, Shashkina E, Manca C, Mehaffy C, Bielefeldt-Ohmann H, Ahuja S, Fallows DA, Izzo A, Bifani P, Dobos K, Kaplan G, Kreiswirth BN. Epidemiologic consequences of microvariation in Mycobacterium tuberculosis. The Journal of Infectious Diseases. 205: 964-74. PMID 22315279 DOI: 10.1093/Infdis/Jir876  0.498
2012 Dorman SE, Chihota VN, Lewis JJ, van der Meulen M, Mathema B, Beylis N, Fielding KL, Grant AD, Churchyard GJ. Genotype MTBDRplus for direct detection of Mycobacterium tuberculosis and drug resistance in strains from gold miners in South Africa. Journal of Clinical Microbiology. 50: 1189-94. PMID 22238443 DOI: 10.1128/Jcm.05723-11  0.426
2011 DeLeo FR, Kennedy AD, Chen L, Bubeck Wardenburg J, Kobayashi SD, Mathema B, Braughton KR, Whitney AR, Villaruz AE, Martens CA, Porcella SF, McGavin MJ, Otto M, Musser JM, Kreiswirth BN. Molecular differentiation of historic phage-type 80/81 and contemporary epidemic Staphylococcus aureus. Proceedings of the National Academy of Sciences of the United States of America. 108: 18091-6. PMID 22025717 DOI: 10.1073/Pnas.1111084108  0.409
2011 Hu Y, Mathema B, Jiang W, Kreiswirth B, Wang W, Xu B. Transmission pattern of drug-resistant tuberculosis and its implication for tuberculosis control in eastern rural China. Plos One. 6: e19548. PMID 21589863 DOI: 10.1371/Journal.Pone.0019548  0.498
2011 Singhal A, Aliouat el M, Hervé M, Mathys V, Kiass M, Creusy C, Delaire B, Tsenova L, Fleurisse L, Bertout J, Camacho L, Foo D, Tay HC, Siew JY, Boukhouchi W, ... ... Mathema B, et al. Experimental tuberculosis in the Wistar rat: a model for protective immunity and control of infection. Plos One. 6: e18632. PMID 21533270 DOI: 10.1371/Journal.Pone.0018632  0.401
2011 Hu Y, Mathema B, Wang W, Kreiswirth B, Jiang W, Xu B. Population-based investigation of fluoroquinolones resistant tuberculosis in rural eastern China. Tuberculosis (Edinburgh, Scotland). 91: 238-43. PMID 21450523 DOI: 10.1016/J.Tube.2011.03.001  0.5
2010 Shopsin B, Eaton C, Wasserman GA, Mathema B, Adhikari RP, Agolory S, Altman DR, Holzman RS, Kreiswirth BN, Novick RP. Mutations in agr do not persist in natural populations of methicillin-resistant Staphylococcus aureus. The Journal of Infectious Diseases. 202: 1593-9. PMID 20942648 DOI: 10.1086/656915  0.394
2010 Elie-Turenne MC, Fernandes H, Mediavilla JR, Rosenthal M, Mathema B, Singh A, Cohen TR, Pawar KA, Shahidi H, Kreiswirth BN, Deitch EA. Prevalence and characteristics of Staphylococcus aureus colonization among healthcare professionals in an urban teaching hospital. Infection Control and Hospital Epidemiology. 31: 574-80. PMID 20426580 DOI: 10.1086/652525  0.363
2010 Mehaffy C, Hess A, Prenni JE, Mathema B, Kreiswirth B, Dobos KM. Descriptive proteomic analysis shows protein variability between closely related clinical isolates of Mycobacterium tuberculosis. Proteomics. 10: 1966-84. PMID 20217870 DOI: 10.1002/Pmic.200900836  0.334
2009 Middelkoop K, Bekker LG, Mathema B, Shashkina E, Kurepina N, Whitelaw A, Fallows D, Morrow C, Kreiswirth B, Kaplan G, Wood R. Molecular epidemiology of Mycobacterium tuberculosis in a South African community with high HIV prevalence. The Journal of Infectious Diseases. 200: 1207-11. PMID 19764885 DOI: 10.1086/605930  0.41
2009 Bifani P, Kurepina N, Mathema B, Wang XM, Kreiswirth B. Genotyping of Mycobacterium tuberculosis clinical isolates using IS6110-based restriction fragment length polymorphism analysis. Methods in Molecular Biology (Clifton, N.J.). 551: 173-88. PMID 19521875 DOI: 10.1007/978-1-60327-999-4_14  0.489
2009 Shet A, Mathema B, Mediavilla JR, Kishii K, Mehandru S, Jeane-Pierre P, Laroche M, Willey BM, Kreiswirth N, Markowitz M, Kreiswirth BN. Colonization and subsequent skin and soft tissue infection due to methicillin-resistant Staphylococcus aureus in a cohort of otherwise healthy adults infected with HIV type 1. The Journal of Infectious Diseases. 200: 88-93. PMID 19463064 DOI: 10.1086/599315  0.367
2009 Mathys V, Wintjens R, Lefevre P, Bertout J, Singhal A, Kiass M, Kurepina N, Wang XM, Mathema B, Baulard A, Kreiswirth BN, Bifani P. Molecular genetics of para-aminosalicylic acid resistance in clinical isolates and spontaneous mutants of Mycobacterium tuberculosis. Antimicrobial Agents and Chemotherapy. 53: 2100-9. PMID 19237648 DOI: 10.1128/Aac.01197-08  0.44
2008 Mathema B, Kurepina N, Fallows D, Kreiswirth BN. Lessons from molecular epidemiology and comparative genomics. Seminars in Respiratory and Critical Care Medicine. 29: 467-80. PMID 18810681 DOI: 10.1055/S-0028-1085699  0.535
2008 Shopsin B, Drlica-Wagner A, Mathema B, Adhikari RP, Kreiswirth BN, Novick RP. Prevalence of agr dysfunction among colonizing Staphylococcus aureus strains. The Journal of Infectious Diseases. 198: 1171-4. PMID 18752431 DOI: 10.1086/592051  0.353
2008 Hu Y, Mathema B, Wang W, Hoffner S, Kreiswirth B, Xu B. Prevalence of multidrug-resistant pulmonary tuberculosis in counties with different duration of DOTS implementation in rural China. Microbial Drug Resistance (Larchmont, N.Y.). 14: 227-32. PMID 18707239 DOI: 10.1089/Mdr.2008.0823  0.495
2008 Bifani P, Mathema B, Kurepina N, Shashkina E, Bertout J, Blanchis AS, Moghazeh S, Driscoll J, Gicquel B, Frothingham R, Kreiswirth BN. The evolution of drug resistance in Mycobacterium tuberculosis: from a mono-rifampin-resistant cluster into increasingly multidrug-resistant variants in an HIV-seropositive population. The Journal of Infectious Diseases. 198: 90-4. PMID 18498237 DOI: 10.1086/588822  0.482
2008 Sinsimer D, Huet G, Manca C, Tsenova L, Koo MS, Kurepina N, Kana B, Mathema B, Marras SA, Kreiswirth BN, Guilhot C, Kaplan G. The phenolic glycolipid of Mycobacterium tuberculosis differentially modulates the early host cytokine response but does not in itself confer hypervirulence. Infection and Immunity. 76: 3027-36. PMID 18443098 DOI: 10.1128/Iai.01663-07  0.495
2008 Mathema B, Mediavilla J, Kreiswirth BN. Sequence analysis of the variable number tandem repeat in Staphylococcus aureus protein A gene: spa typing. Methods in Molecular Biology (Clifton, N.J.). 431: 285-305. PMID 18287764 DOI: 10.1007/978-1-60327-032-8_22  0.325
2008 Kennedy AD, Otto M, Braughton KR, Whitney AR, Chen L, Mathema B, Mediavilla JR, Byrne KA, Parkins LD, Tenover FC, Kreiswirth BN, Musser JM, DeLeo FR. Epidemic community-associated methicillin-resistant Staphylococcus aureus: recent clonal expansion and diversification. Proceedings of the National Academy of Sciences of the United States of America. 105: 1327-32. PMID 18216255 DOI: 10.1073/Pnas.0710217105  0.434
2006 Voyich JM, Otto M, Mathema B, Braughton KR, Whitney AR, Welty D, Long RD, Dorward DW, Gardner DJ, Lina G, Kreiswirth BN, DeLeo FR. Is Panton-Valentine leukocidin the major virulence determinant in community-associated methicillin-resistant Staphylococcus aureus disease? The Journal of Infectious Diseases. 194: 1761-70. PMID 17109350 DOI: 10.1086/509506  0.389
2006 Mathema B, Kurepina NE, Bifani PJ, Kreiswirth BN. Molecular epidemiology of tuberculosis: current insights. Clinical Microbiology Reviews. 19: 658-85. PMID 17041139 DOI: 10.1128/Cmr.00061-05  0.491
2006 Gutacker MM, Mathema B, Soini H, Shashkina E, Kreiswirth BN, Graviss EA, Musser JM. Single-nucleotide polymorphism-based population genetic analysis of Mycobacterium tuberculosis strains from 4 geographic sites. The Journal of Infectious Diseases. 193: 121-8. PMID 16323140 DOI: 10.1086/498574  0.4
2006 Lee YA, Munsiff SS, Li J, Driver CR, Mathema B, Kreiswirth BN. Rising number of tuberculosis cases among Tibetans in New York City. Journal of Immigrant Health. 3: 173-80. PMID 16228784 DOI: 10.1023/A:1012223510638  0.423
2005 Saïd-Salim B, Mathema B, Braughton K, Davis S, Sinsimer D, Eisner W, Likhoshvay Y, Deleo FR, Kreiswirth BN. Differential distribution and expression of Panton-Valentine leucocidin among community-acquired methicillin-resistant Staphylococcus aureus strains. Journal of Clinical Microbiology. 43: 3373-9. PMID 16000462 DOI: 10.1128/Jcm.43.7.3373-3379.2005  0.345
2005 Tsenova L, Ellison E, Harbacheuski R, Moreira AL, Kurepina N, Reed MB, Mathema B, Barry CE, Kaplan G. Virulence of selected Mycobacterium tuberculosis clinical isolates in the rabbit model of meningitis is dependent on phenolic glycolipid produced by the bacilli. The Journal of Infectious Diseases. 192: 98-106. PMID 15942899 DOI: 10.1086/430614  0.412
2005 Kurepina N, Likhoshvay E, Shashkina E, Mathema B, Kremer K, van Soolingen D, Bifani P, Kreiswirth BN. Targeted hybridization of IS6110 fingerprints identifies the W-Beijing Mycobacterium tuberculosis strains among clinical isolates. Journal of Clinical Microbiology. 43: 2148-54. PMID 15872234 DOI: 10.1128/Jcm.43.5.2148-2154.2005  0.433
2004 Manca C, Reed MB, Freeman S, Mathema B, Kreiswirth B, Barry CE, Kaplan G. Differential monocyte activation underlies strain-specific Mycobacterium tuberculosis pathogenesis. Infection and Immunity. 72: 5511-4. PMID 15322056 DOI: 10.1128/Iai.72.9.5511-5514.2004  0.332
2004 Post FA, Willcox PA, Mathema B, Steyn LM, Shean K, Ramaswamy SV, Graviss EA, Shashkina E, Kreiswirth BN, Kaplan G. Genetic polymorphism in Mycobacterium tuberculosis isolates from patients with chronic multidrug-resistant tuberculosis. The Journal of Infectious Diseases. 190: 99-106. PMID 15195248 DOI: 10.1086/421501  0.544
2003 Kaplan G, Post FA, Moreira AL, Wainwright H, Kreiswirth BN, Tanverdi M, Mathema B, Ramaswamy SV, Walther G, Steyn LM, Barry CE, Bekker LG. Mycobacterium tuberculosis growth at the cavity surface: a microenvironment with failed immunity. Infection and Immunity. 71: 7099-108. PMID 14638800 DOI: 10.1128/Iai.71.12.7099-7108.2003  0.401
2003 Munsiff SS, Nivin B, Sacajiu G, Mathema B, Bifani P, Kreiswirth BN. Persistence of a highly resistant strain of tuberculosis in New York City during 1990-1999. The Journal of Infectious Diseases. 188: 356-63. PMID 12870116 DOI: 10.1086/376837  0.462
2003 Saïd-Salim B, Mathema B, Kreiswirth BN. Community-acquired methicillin-resistant Staphylococcus aureus: an emerging pathogen. Infection Control and Hospital Epidemiology. 24: 451-5. PMID 12828324 DOI: 10.1086/502231  0.395
2003 Shopsin B, Mathema B, Alcabes P, Said-Salim B, Lina G, Matsuka A, Martinez J, Kreiswirth BN. Prevalence of agr specificity groups among Staphylococcus aureus strains colonizing children and their guardians. Journal of Clinical Microbiology. 41: 456-9. PMID 12517893 DOI: 10.1128/Jcm.41.1.456-459.2003  0.343
2002 Driscoll JR, Bifani PJ, Mathema B, McGarry MA, Zickas GM, Kreiswirth BN, Taber HW. Spoligologos: a bioinformatic approach to displaying and analyzing Mycobacterium tuberculosis data. Emerging Infectious Diseases. 8: 1306-9. PMID 12453361 DOI: 10.3201/Eid0811.020174  0.448
2002 Munsiff SS, Bassoff T, Nivin B, Li J, Sharma A, Bifani P, Mathema B, Driscoll J, Kreiswirth BN. Molecular epidemiology of multidrug-resistant tuberculosis, New York City, 1995-1997. Emerging Infectious Diseases. 8: 1230-8. PMID 12453347 DOI: 10.3201/Eid0811.020288  0.454
2002 Mathema B, Bifani PJ, Driscoll J, Steinlein L, Kurepina N, Moghazeh SL, Shashkina E, Marras SA, Campbell S, Mangura B, Shilkret K, Crawford JT, Frothingham R, Kreiswirth BN. Identification and evolution of an IS6110 low-copy-number Mycobacterium tuberculosis cluster. The Journal of Infectious Diseases. 185: 641-9. PMID 11865421 DOI: 10.1086/339345  0.44
2002 Bifani PJ, Mathema B, Kurepina NE, Kreiswirth BN. Global dissemination of the Mycobacterium tuberculosis W-Beijing family strains. Trends in Microbiology. 10: 45-52. PMID 11755085 DOI: 10.1016/S0966-842X(01)02277-6  0.421
2002 Bifani PJ, Mathema B, Kurepina NE, Kreiswirth BN. Strain families of Mycobacterium tuberculosis Trends in Microbiology. 10: 168. DOI: 10.1016/S0966-842X(02)02318-1  0.397
2001 Bifani P, Mathema B, Campo M, Moghazeh S, Nivin B, Shashkina E, Driscoll J, Munsiff SS, Frothingham R, Kreiswirth BN. Molecular identification of streptomycin monoresistant Mycobacterium tuberculosis related to multidrug-resistant W strain Emerging Infectious Diseases. 7: 842-848. PMID 11747697 DOI: 10.3201/Eid0705.010512  0.493
2001 Magnani J, Mathema B, Berger J, Brown S, David M, Glatt A, Pujol F, Segal-Maurer S, Riley LW, Kreiswirth BN, Sepkowitz KA. Molecular epidemiology of tuberculosis among eight hospitals in New York City, 1996-1997 International Journal of Infectious Diseases. 5: 126-132. PMID 11724668 DOI: 10.1016/S1201-9712(01)90086-4  0.389
2001 Mathema B, Cross E, Dun E, Park S, Bedell J, Slade B, Williams M, Riley L, Chaturvedi V, Perlin DS. Prevalence of vaginal colonization by drug-resistant Candida species in college-age women with previous exposure to over-the-counter azole antifungals Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 33. PMID 11477529 DOI: 10.1086/322600  0.339
2000 Shopsin B, Mathema B, Zhao X, Martinez J, Kornblum J, Kreiswirth BN. Resistance rather than virulence selects for the clonal spread of methicillin-resistant Staphylococcus aureus: implications for MRSA transmission. Microbial Drug Resistance (Larchmont, N.Y.). 6: 239-44. PMID 11144424 DOI: 10.1089/Mdr.2000.6.239  0.421
2000 Shilkret K, Liu Z, Santos F, Dillon M, Schulman ME, Kreiswirth B, Bifani P, Moghazeh S, Mathema B. Misdiagnoses of tuberculosis resulting from laboratory cross- contamination of Mycobacterium tuberculosis cultures - New Jersey, 1998 Journal of the American Medical Association. 283: 3191-3193. PMID 10905901  0.319
2000 Braden CR, Onorato IM, Crawford JT, Hannan M, Bifani PJ, Shopsin B, Alcabes P, Mathema B, Kreiswirth BN, Liu Z, Driscoll J, Frothingham R, Musser JM. Molecular epidemiology and tuberculosis control [2] (multiple letters) Journal of the American Medical Association. 284: 305-307. PMID 10891953  0.304
2000 Shopsin B, Mathema B, Martinez J, Ha E, Campo ML, Fierman A, Krasinski K, Kornblum J, Alcabes P, Waddington M, Riehman M, Kreiswirth BN. Prevalence of methicillin-resistant and methicillin-susceptible Staphylococcus aureus in the community. The Journal of Infectious Diseases. 182: 359-62. PMID 10882625 DOI: 10.1086/315695  0.386
1999 Bifani PJ, Mathema B, Liu Z, Moghazeh SL, Shopsin B, Tempalski B, Driscol J, Frothingham R, Musser JM, Alcabes P, Kreiswirth BN. Identification of a W variant outbreak of Mycobacterium tuberculosis via population-based molecular epidemiology. Jama. 282: 2321-7. PMID 10612319 DOI: 10.1001/Jama.282.24.2321  0.482
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