Seishi Shimizu, Ph.D. - Publications

Affiliations: 
2003- Chemistry University of York, York, England, United Kingdom 
Area:
Statistical thermodynamics

81 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Shimizu S, Matubayasi N. Sorption from Solution: A Statistical Thermodynamic Fluctuation Theory. Langmuir : the Acs Journal of Surfaces and Colloids. 39: 12987-12998. PMID 37681528 DOI: 10.1021/acs.langmuir.3c00804  0.327
2020 Isobe N, Shimizu S. Salt-induced LCST-type thermal gelation of methylcellulose: quantifying non-specific interactions via fluctuation theory. Physical Chemistry Chemical Physics : Pccp. 22: 15999-16006. PMID 32632420 DOI: 10.1039/D0Cp01687J  0.457
2020 Abranches DO, Benfica J, Soares BP, Leal-Duaso A, Sintra TE, Pires E, Pinho SP, Shimizu S, Coutinho JAP. Unveiling the mechanism of hydrotropy: evidence for water-mediated aggregation of hydrotropes around the solute. Chemical Communications (Cambridge, England). PMID 32462150 DOI: 10.1039/D0Cc03217D  0.388
2020 Shimizu S, Matubayasi N. Thermodynamic stability condition can judge whether a nanoparticle dispersion can be considered a solution in a single phase. Journal of Colloid and Interface Science. 575: 472-479. PMID 32402826 DOI: 10.1016/J.Jcis.2020.04.101  0.332
2020 Soares BP, Abranches DO, Sintra TE, Leal-Duaso A, García JI, Pires E, Shimizu S, Pinho SP, Coutinho JAP. Glycerol Ethers as Hydrotropes and Their Use to Enhance the Solubility of Phenolic Acids in Water Acs Sustainable Chemistry & Engineering. 8: 5742-5749. DOI: 10.1021/Acssuschemeng.0C01032  0.301
2020 Reid JE, Shimizu S, Walker AJ. Connecting precursors to a protic ionic liquid: Effects of hydrogen bond synergy in acid-base binary mixtures on the solvent-solute interactions Journal of Molecular Liquids. 297: 111746. DOI: 10.1016/J.Molliq.2019.111746  0.37
2020 Shimizu S. Formulating rationally via statistical thermodynamics Current Opinion in Colloid & Interface Science. 48: 53-64. DOI: 10.1016/J.Cocis.2020.03.008  0.342
2020 Berga L, Bruce I, Nicol TWJ, Holding AJ, Isobe N, Shimizu S, Walker AJ, Reid JESJ. Cellulose dissolution and regeneration using a non-aqueous, non-stoichiometric protic ionic liquid system Cellulose. 1-11. DOI: 10.1007/S10570-020-03444-8  0.34
2019 De Bruyn M, Budarin VL, Misefari A, Shimizu S, Fish H, Cockett M, Hunt AJ, Hofstetter H, Weckhuysen BM, Clark JH, Macquarrie DJ. Geminal Diol of Dihydrolevoglucosenone as a Switchable Hydrotrope: A Continuum of Green Nanostructured Solvents. Acs Sustainable Chemistry & Engineering. 7: 7878-7883. PMID 32953281 DOI: 10.1021/Acssuschemeng.9B00470  0.383
2019 Harton K, Shimizu S. Response to the "Comments on 'Statistical thermodynamics of casein aggregation: Effects of salts and water' [Biophys Chem. 247 (2019) 34-42]". Biophysical Chemistry. 106267. PMID 31629560 DOI: 10.1016/J.Bpc.2019.106267  0.348
2019 Darby JF, Hopkins AP, Shimizu S, Roberts SM, Brannigan JA, Turkenburg JP, Thomas GH, Hubbard RE, Fischer M. Water networks can determine the affinity of ligand binding to proteins. Journal of the American Chemical Society. PMID 31518131 DOI: 10.1021/Jacs.9B06275  0.336
2019 Reid JESJ, Aquino PHG, Walker AJ, Karadakov PB, Shimizu S. Statistical Thermodynamics Unveils How Ions Influence an Aqueous Diels-Alder Reaction. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. PMID 30882999 DOI: 10.1002/Cphc.201900024  0.341
2019 Harton K, Shimizu S. Statistical thermodynamics of casein aggregation: Effects of salts and water. Biophysical Chemistry. 247: 34-42. PMID 30822572 DOI: 10.1016/J.Bpc.2019.02.004  0.407
2019 Shimizu S, Abbott S, Adamska K, Voelkel A. Quantifying non-specific interactions via liquid chromatography. The Analyst. PMID 30644458 DOI: 10.1039/C8An02244E  0.388
2019 Shimizu S, Nagai Kanasaki Y. Effect of solute aggregation on solubilization Journal of Molecular Liquids. 274: 209-214. DOI: 10.1016/J.Molliq.2018.10.102  0.37
2019 Shimizu S, Matubayasi N. Statistical thermodynamics of regular solutions and solubility parameters Journal of Molecular Liquids. 273: 626-633. DOI: 10.1016/J.Molliq.2018.10.024  0.418
2019 Byrne FP, Hodds WM, Shimizu S, Farmer TJ, Hunt AJ. A comparison of the solvation power of the green solvent 2,2,5,5-tetramethyloxolane versus toluene via partition coefficients Journal of Cleaner Production. 240: 118175. DOI: 10.1016/J.Jclepro.2019.118175  0.403
2019 Nicol TWJ, Isobe N, Clark JH, Matubayasi N, Shimizu S. The mechanism of salt effects on starch gelatinization from a statistical thermodynamic perspective Food Hydrocolloids. 87: 593-601. DOI: 10.1016/J.Foodhyd.2018.08.042  0.378
2018 Shimizu S, Matubayasi N. Statistical thermodynamic foundation for mesoscale aggregation in ternary mixtures. Physical Chemistry Chemical Physics : Pccp. PMID 29744488 DOI: 10.1039/C8Cp01207E  0.379
2018 Shimizu S, Matubayasi N. Ion hydration: linking self-diffusion and reorientational motion to water structure. Physical Chemistry Chemical Physics : Pccp. PMID 29419829 DOI: 10.1039/C7Cp07309G  0.328
2018 Sintra TE, Shimizu K, Ventura SPM, Shimizu S, Lopes JNC, Coutinho JAP. Enhanced dissolution of ibuprofen using ionic liquids as catanionic hydrotropes Physical Chemistry Chemical Physics. 20: 2094-2103. PMID 29302650 DOI: 10.1039/C7Cp07569C  0.338
2018 Shimizu S, Matubayasi N. A unified perspective on preferential solvation and adsorption based on inhomogeneous solvation theory Physica a: Statistical Mechanics and Its Applications. 492: 1988-1996. DOI: 10.1016/J.Physa.2017.11.113  0.382
2017 Martinez L, Shimizu S. Molecular interpretation of preferential interactions in protein solvation: a solvent-shell perspective by means of minimum-distance distribution functions. Journal of Chemical Theory and Computation. PMID 29120639 DOI: 10.1021/Acs.Jctc.7B00599  0.428
2017 Reid JESJ, Bernardes CES, Agapito F, Martins F, Shimizu S, Minas da Piedade ME, Walker AJ. Structure-property relationships in protic ionic liquids: a study of solvent-solvent and solvent-solute interactions. Physical Chemistry Chemical Physics : Pccp. PMID 29022017 DOI: 10.1039/C7Cp05076C  0.388
2017 Shimizu S, Matubayasi N. Hydrotropy and scattering: pre-ouzo as an extended near-spinodal region. Physical Chemistry Chemical Physics : Pccp. PMID 28948253 DOI: 10.1039/C7Cp04990K  0.333
2017 Nicol TWJ, Isobe N, Clark JH, Shimizu S. Statistical thermodynamics unveils the dissolution mechanism of cellobiose. Physical Chemistry Chemical Physics : Pccp. PMID 28820200 DOI: 10.1039/C7Cp04647B  0.423
2017 Shimizu S, Abbott S, Matubayasi N. Quantifying non-specific interactions between flavour and food biomolecules. Food & Function. PMID 28792038 DOI: 10.1039/C7Fo00313G  0.409
2017 Maneffa AJ, Stenner R, Matharu AS, Clark JH, Matubayasi N, Shimizu S. Water activity in liquid food systems: A molecular scale interpretation. Food Chemistry. 237: 1133-1138. PMID 28763960 DOI: 10.1016/J.Foodchem.2017.06.046  0.429
2017 Reid JESJ, Agapito F, Bernardes CES, Martins F, Walker AJ, Shimizu S, Minas da Piedade ME. Structure-property relationships in protic ionic liquids: a thermochemical study. Physical Chemistry Chemical Physics : Pccp. PMID 28721423 DOI: 10.1039/C7Cp02230A  0.375
2017 Kobayashi T, Reid JESJ, Shimizu S, Fyta M, Smiatek J. The properties of residual water molecules in ionic liquids: a comparison between direct and inverse Kirkwood-Buff approaches. Physical Chemistry Chemical Physics : Pccp. PMID 28715012 DOI: 10.1039/C7Cp03717A  0.379
2017 Shimizu S, Smith PE. How Osmolytes Counteract Pressure Denaturation on a Molecular Scale. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. PMID 28678423 DOI: 10.1002/Cphc.201700503  0.398
2017 Shimizu S, Matubayasi N. Unifying hydrotropy under Gibbs phase rule. Physical Chemistry Chemical Physics : Pccp. PMID 28492648 DOI: 10.1039/C7Cp02132A  0.412
2017 Shimizu S, Matubayasi N. Osmolyte depletion viewed in terms of the dividing membrane and its work of expansion against osmotic pressure. Biophysical Chemistry. PMID 28283210 DOI: 10.1016/J.Bpc.2017.02.003  0.366
2017 Reid JE, Gammons RJ, Slattery JM, Walker AJ, Shimizu S. Interactions in Water-Ionic Liquid Mixtures: Comparing Protic and Aprotic Systems. The Journal of Physical Chemistry. B. PMID 28084738 DOI: 10.1021/Acs.Jpcb.6B10562  0.365
2017 Abbott S, Booth JJ, Shimizu S. Practical molecular thermodynamics for greener solution chemistry Green Chemistry. 19: 68-75. DOI: 10.1039/C6Gc03002E  0.363
2017 Shimizu S, Stenner R, Matubayasi N. Gastrophysics: Statistical thermodynamics of biomolecular denaturation and gelation from the Kirkwood-Buff theory towards the understanding of tofu Food Hydrocolloids. 62: 128-139. DOI: 10.1016/J.Foodhyd.2016.07.022  0.397
2016 Shimizu S, Matubayasi N. The origin of cooperative solubilisation by hydrotropes. Physical Chemistry Chemical Physics : Pccp. 18: 25621-25628. PMID 27711657 DOI: 10.1039/C6Cp04823D  0.406
2016 Chiba S, Furuta T, Shimizu S. Kirkwood-Buff Integrals for Aqueous Urea Solutions Based upon the Quantum Chemical Electrostatic Potential and Interaction Energies. The Journal of Physical Chemistry. B. 120: 7714-23. PMID 27434200 DOI: 10.1021/Acs.Jpcb.6B05611  0.429
2016 Shimizu S, Abbott S. How Entrainers Enhance Solubility in Supercritical Carbon Dioxide. The Journal of Physical Chemistry. B. PMID 27064610 DOI: 10.1021/Acs.Jpcb.6B01380  0.398
2016 Stenner R, Matubayasi N, Shimizu S. Gelation of carrageenan: Effects of sugars and polyols Food Hydrocolloids. 54: 284-292. DOI: 10.1016/J.Foodhyd.2015.10.007  0.38
2015 Shimizu S. Caffeine dimerization: effects of sugar, salts, and water structure. Food & Function. 6: 3228-35. PMID 26222923 DOI: 10.1039/C5Fo00610D  0.392
2015 Reid JE, Walker AJ, Shimizu S. Residual water in ionic liquids: clustered or dissociated? Physical Chemistry Chemical Physics : Pccp. 17: 14710-8. PMID 25974272 DOI: 10.1039/C5Cp01854D  0.359
2015 Chen S, Itoh Y, Masuda T, Shimizu S, Zhao J, Ma J, Nakamura S, Okuro K, Noguchi H, Uosaki K, Aida T. Ionic interactions. Subnanoscale hydrophobic modulation of salt bridges in aqueous media. Science (New York, N.Y.). 348: 555-9. PMID 25931555 DOI: 10.1126/Science.Aaa7532  0.34
2015 Booth JJ, Omar M, Abbott S, Shimizu S. Hydrotrope accumulation around the drug: the driving force for solubilization and minimum hydrotrope concentration for nicotinamide and urea. Physical Chemistry Chemical Physics : Pccp. 17: 8028-37. PMID 25723588 DOI: 10.1039/C4Cp05414H  0.35
2014 Shimizu S, Matubayasi N. Gelation: the role of sugars and polyols on gelatin and agarose. The Journal of Physical Chemistry. B. 118: 13210-6. PMID 25375260 DOI: 10.1021/Jp509099H  0.429
2014 Shimizu S, Matubayasi N. Hydrotropy: monomer-micelle equilibrium and minimum hydrotrope concentration. The Journal of Physical Chemistry. B. 118: 10515-24. PMID 25144510 DOI: 10.1021/Jp505869M  0.36
2014 Shimizu S, Matubayasi N. Preferential solvation: dividing surface vs excess numbers. The Journal of Physical Chemistry. B. 118: 3922-30. PMID 24689966 DOI: 10.1021/Jp410567C  0.389
2013 Shimizu S, Booth JJ, Abbott S. Hydrotropy: binding models vs. statistical thermodynamics. Physical Chemistry Chemical Physics : Pccp. 15: 20625-32. PMID 24189644 DOI: 10.1039/C3Cp53791A  0.439
2013 Shimizu S. Sucrose–water mixture: From thermodynamics to solution structure Chemical Physics Letters. 582: 129-133. DOI: 10.1016/J.Cplett.2013.07.009  0.439
2012 Booth JJ, Abbott S, Shimizu S. Mechanism of hydrophobic drug solubilization by small molecule hydrotropes. The Journal of Physical Chemistry. B. 116: 14915-21. PMID 23236952 DOI: 10.1021/Jp309819R  0.442
2011 Shimizu S. The effect of urea on hydrophobic hydration: Preferential interaction and the enthalpy of transfer Chemical Physics Letters. 517: 76-79. DOI: 10.1016/J.Cplett.2011.10.011  0.464
2011 Shimizu S. Molecular origin of the cosolvent-induced changes in the thermal stability of proteins Chemical Physics Letters. 514: 156-158. DOI: 10.1016/J.Cplett.2011.08.038  0.36
2010 Wright L, Sanders MW, Tate L, Fairless G, Crowhurst L, Bruce NC, Walker AJ, Hembury GA, Shimizu S. Hydrophilicity, the major determining factor influencing the solvation environment of protic ionic liquids. Physical Chemistry Chemical Physics : Pccp. 12: 9063-6. PMID 20563334 DOI: 10.1039/B919348K  0.361
2009 Sanders MW, Wright L, Tate L, Fairless G, Crowhurst L, Bruce NC, Walker AJ, Hembury GA, Shimizu S. Unexpected preferential dehydration of artemisinin in ionic liquids. The Journal of Physical Chemistry. A. 113: 10143-5. PMID 19722599 DOI: 10.1021/Jp906436E  0.319
2006 Shimizu S, McLaren WM, Matubayasi N. The Hofmeister series and protein-salt interactions. The Journal of Chemical Physics. 124: 234905. PMID 16821951 DOI: 10.1063/1.2206174  0.414
2006 Keeble AH, Kirkpatrick N, Shimizu S, Kleanthous C. Calorimetric dissection of colicin DNase--immunity protein complex specificity. Biochemistry. 45: 3243-54. PMID 16519519 DOI: 10.1021/Bi052373O  0.311
2006 Shimizu S, Matubayasi N. Preferential hydration of proteins: A Kirkwood-Buff approach Chemical Physics Letters. 420: 518-522. DOI: 10.1016/J.Cplett.2006.01.034  0.378
2005 Shimizu S, Moghaddam MS, Chan HS, Czaplewski C, Kalinowski S, Liwo A, Ripoll DR, Scheraga HA. Comment on "molecular origin of anticooperativity in hydrophobic Association" Journal of Physical Chemistry B. 109: 21220-21224. PMID 16853749 DOI: 10.1021/Jp052076T  0.553
2005 Moghaddam MS, Shimizu S, Chan HS. Temperature dependence of three-body hydrophobic interactions: potential of mean force, enthalpy, entropy, heat capacity, and nonadditivity. Journal of the American Chemical Society. 127: 303-16. PMID 15631480 DOI: 10.1021/Ja040165Y  0.622
2004 Shimizu S, Boon CL. The Kirkwood-Buff theory and the effect of cosolvents on biochemical reactions. The Journal of Chemical Physics. 121: 9147-55. PMID 15527383 DOI: 10.1063/1.1806402  0.434
2004 Shimizu S. Estimation of excess solvation numbers of water and cosolvents from preferential interaction and volumetric experiments. The Journal of Chemical Physics. 120: 4989-90. PMID 15267361 DOI: 10.1063/1.1646373  0.417
2004 Shimizu S, Smith DJ. Preferential hydration and the exclusion of cosolvents from protein surfaces. The Journal of Chemical Physics. 121: 1148-54. PMID 15260652 DOI: 10.1063/1.1759615  0.377
2004 Chan HS, Shimizu S, Kaya H. Cooperativity principles in protein folding. Methods in Enzymology. 380: 350-79. PMID 15051345 DOI: 10.1016/S0076-6879(04)80016-8  0.698
2004 Shimizu S. Estimating hydration changes upon biomolecular reactions from osmotic stress, high pressure, and preferential hydration experiments. Proceedings of the National Academy of Sciences of the United States of America. 101: 1195-9. PMID 14732698 DOI: 10.1073/Pnas.0305836101  0.349
2004 Shimizu S. The hydrophobic effect and the excess free energy of solvation Chemical Physics Letters. 392: 456-459. DOI: 10.1016/J.Cplett.2004.04.124  0.432
2002 Shimizu S, Chan HS. Origins of protein denatured state compactness and hydrophobic clustering in aqueous urea: inferences from nonpolar potentials of mean force. Proteins. 49: 560-6. PMID 12402364 DOI: 10.1002/Prot.10263  0.671
2002 Shimizu S, Chan HS. Anti-cooperativity and cooperativity in hydrophobic interactions: Three-body free energy landscapes and comparison with implicit-solvent potential functions for proteins. Proteins. 48: 15-30. PMID 12012334 DOI: 10.1002/Prot.10108  0.658
2002 Shimizu S, Chan HS. Reply to “Comment on ‘Anti-cooperativity in hydrophobic interactions: A simulation study of spatial dependence of three-body effects and beyond’ ” [J. Chem. Phys. 116, 2665 (2002)] The Journal of Chemical Physics. 116: 2668-2669. DOI: 10.1063/1.1434995  0.584
2001 Shimizu S, Chan HS. Configuration-dependent heat capacity of pairwise hydrophobic interactions. Journal of the American Chemical Society. 123: 2083-4. PMID 11456842 DOI: 10.1021/Ja0034390  0.638
2001 Shimizu S, Chan HS. Statistical mechanics of solvophobic aggregation: Additive and cooperative effects The Journal of Chemical Physics. 115: 3424-3431. DOI: 10.1063/1.1386420  0.618
2001 Shimizu S, Chan HS. Anti-cooperativity in hydrophobic interactions: A simulation study of spatial dependence of three-body effects and beyond The Journal of Chemical Physics. 115: 1414-1421. DOI: 10.1063/1.1379765  0.632
2000 Shimizu S, Chan HS. Temperature dependence of hydrophobic interactions: A mean force perspective, effects of water density, and nonadditivity of thermodynamic signatures The Journal of Chemical Physics. 113: 4683-4700. DOI: 10.1063/1.1288922  0.668
1999 Shimizu S, Ikeguchi M, Nakamura S, Shimizu K. Size dependence of transfer free energies: A hard-sphere-chain- based formalism Journal of Chemical Physics. 110: 2971-2982. DOI: 10.1063/1.477940  0.566
1999 Shimizu S, Shimizu K. Alcohol Denaturation : Thermodynamic Theory Of Peptide Unit Solvation Journal of the American Chemical Society. 121: 2387-2394. DOI: 10.1021/Ja982560S  0.525
1998 Sagara J, Shimizu S, Kawabata T, Nakamura S, Ikeguchi M, Shimizu K. The use of sequence comparison to detect ‘identities’ in tRNA genes Nucleic Acids Research. 26: 1974-1979. PMID 9518491 DOI: 10.1093/Nar/26.8.1974  0.453
1998 Ikeguchi M, Shimizu S, Nakamura aS, Shimizu K. Roles of Hydrogen Bonding and the Hard Core of Water on Hydrophobic Hydration Journal of Physical Chemistry B. 102: 5891-5898. DOI: 10.1021/Jp980210M  0.541
1998 Ikeguchi M, Shimizu S, Tazaki K, Nakamura S, Shimizu K. Calculation of temperature dependence of free energy caused by potential function changes Chemical Physics Letters. 288: 333-337. DOI: 10.1016/S0009-2614(98)00282-6  0.507
1998 Shimizu S, Ikeguchi M, Nakamura S, Shimizu K. Molecular Volume, Surface Area, And Curvature Dependence Of The Configurational Entropy Change Upon Solvation : Effects Of Molecular Bonding Chemical Physics Letters. 284: 235-246. DOI: 10.1016/S0009-2614(97)01381-X  0.573
1998 Shimizu S, Ikeguchi M, Shimizu K. An off-lattice theory of solvation: extension of the Flory χ parameter into continuum space Chemical Physics Letters. 282: 79-90. DOI: 10.1016/S0009-2614(97)01147-0  0.55
1997 Sagara J, Shimizu S, Kawabata T, Nakamura S, Ikeguchi M, Shimizu K. A Novel Method to Detect Identities in tRNA Genes Using Sequence Comparison Genome Informatics. 8: 330-331. DOI: 10.11234/Gi1990.8.330  0.424
1997 Shimizu S, Ikeguchi M, Shimizu K. Extracting contact free energy from solubility: excluded volume effects of polymers in continuum space Chemical Physics Letters. 268: 93-100. DOI: 10.1016/S0009-2614(97)00165-6  0.539
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