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Vikas Trivedi - Publications

Affiliations: 
2010-2015 Bioengineering California Institute of Technology, Pasadena, CA 
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14/59 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Gritti N, Lim JL, Anlaş K, Pandya M, Aalderink G, Martínez-Ara G, Trivedi V. MOrgAna: accessible quantitative analysis of organoids with machine learning. Development (Cambridge, England). 148. PMID 34494114 DOI: 10.1242/dev.199611  0.326
2020 Fulton T, Trivedi V, Attardi A, Anlas K, Dingare C, Arias AM, Steventon B. Axis Specification in Zebrafish Is Robust to Cell Mixing and Reveals a Regulation of Pattern Formation by Morphogenesis. Current Biology : Cb. PMID 32559447 DOI: 10.1016/J.Cub.2020.05.048  0.357
2018 Trivedi V, Choi HMT, Fraser SE, Pierce NA. Multidimensional quantitative analysis of mRNA expression within intact vertebrate embryos. Development (Cambridge, England). 145. PMID 29311262 DOI: 10.1242/Dev.156869  0.663
2017 Turner DA, Girgin M, Alonso-Crisostomo L, Trivedi V, Baillie-Johnson P, Glodowski CR, Hayward PC, Collignon J, Gustavsen C, Serup P, Steventon B, Lutolf M, Martinez AA. Anteroposterior polarity and elongation in the absence of extraembryonic tissues and spatially localised signalling in Gastruloids, mammalian embryonic organoids. Development (Cambridge, England). PMID 28951435 DOI: 10.1242/Dev.150391  0.331
2017 Cutrale F, Trivedi V, Trinh LA, Chiu CL, Choi JM, Artiga MS, Fraser SE. Hyperspectral phasor analysis enables multiplexed 5D in vivo imaging. Nature Methods. PMID 28068315 DOI: 10.1038/Nmeth.4134  0.706
2015 Trivedi V, Truong TV, Trinh le A, Holland DB, Liebling M, Fraser SE. Dynamic structure and protein expression of the live embryonic heart captured by 2-photon light sheet microscopy and retrospective registration. Biomedical Optics Express. 6: 2056-66. PMID 26114028 DOI: 10.1364/Boe.6.002056  0.754
2015 Ruf-Zamojski F, Trivedi V, Fraser SE, Trinh le A. Spatio-Temporal Differences in Dystrophin Dynamics at mRNA and Protein Levels Revealed by a Novel FlipTrap Line. Plos One. 10: e0128944. PMID 26083378 DOI: 10.1371/Journal.Pone.0128944  0.499
2015 Li Y, Trivedi V, Truong TV, Koos DS, Lansford R, Chuong CM, Warburton D, Moats RA, Fraser SE. Dynamic imaging of the growth plate cartilage reveals multiple contributors to skeletal morphogenesis. Nature Communications. 6: 6798. PMID 25865282 DOI: 10.1038/Ncomms7798  0.719
2014 Cutrale F, Trivedi V, Trinh L, Truong T, Fraser S. A Spectral Phasor Perspective in Zebrafish Muscle Development Biophysical Journal. 106: 796a. DOI: 10.1016/J.Bpj.2013.11.4367  0.688
2014 Trivedi V, Li Y, Truong TV, Koos D, Cheng-Ming C, Moats R, Fraser SE. How Embryonic Cartilage Grows: Insights Gained from Quantitative Live Imaging Biophysical Journal. 106: 575a. DOI: 10.1016/J.Bpj.2013.11.3188  0.74
2014 Truong TV, Trivedi V, Trinh L, Holland D, Cutrale F, Choi JM, Fraser SE. Live 4D Imaging of the Embryonic Vertebrate Heart with Two-Photon Light Sheet Microscopy and Simultaneous Optical Phase Stamping Biophysical Journal. 106: 435a-436a. DOI: 10.1016/J.Bpj.2013.11.2453  0.699
2013 Rosenthal AZ, Zhang X, Lucey KS, Ottesen EA, Trivedi V, Choi HM, Pierce NA, Leadbetter JR. Localizing transcripts to single cells suggests an important role of uncultured deltaproteobacteria in the termite gut hydrogen economy. Proceedings of the National Academy of Sciences of the United States of America. 110: 16163-8. PMID 24043823 DOI: 10.1073/Pnas.1307876110  0.684
2013 Truong TV, Holland DB, Trivedi V, Fraser SE. Imaging Proteins, Cells, and Tissues Dynamics during Embryogenesis with Two-Photon Light-Sheet Microscopy Biophysical Journal. 104: 337a. DOI: 10.1016/J.Bpj.2012.11.1872  0.734
2013 Trivedi V, Truong TV, Trinh LA, Holland DB, Liebling M, Fraser SE. Dynamic Three-Dimensional Imaging of Cellular Shape Changes and Protein Expression in the Developing Zebrafish Heart Biophysical Journal. 104: 202a. DOI: 10.1016/J.Bpj.2012.11.1140  0.771
Low-probability matches (unlikely to be authored by this person)
2018 Lenne PF, Trivedi V. Tissue 'melting' sculpts embryo. Nature. 561: 315-316. PMID 30224727 DOI: 10.1038/D41586-018-06108-7  0.281
2021 Anlas K, Baillie-Benson P, Arató K, Turner DA, Trivedi V. Gastruloids: Embryonic Organoids from Mouse Embryonic Stem Cells to Study Patterning and Development in Early Mammalian Embryos. Methods in Molecular Biology (Clifton, N.J.). 2258: 131-147. PMID 33340359 DOI: 10.1007/978-1-0716-1174-6_10  0.247
2021 Veenvliet JV, Lenne PF, Turner DA, Nachman I, Trivedi V. Sculpting with stem cells: how models of embryo development take shape. Development (Cambridge, England). 148. PMID 34908102 DOI: 10.1242/dev.192914  0.24
2023 Torregrosa-Cortés G, Oriola D, Trivedi V, Garcia-Ojalvo J. Single-cell Bayesian deconvolution. Iscience. 26: 107941. PMID 37854705 DOI: 10.1016/j.isci.2023.107941  0.231
2021 Anlas K, Trivedi V. Studying evolution of the primary body axis in vivo and in vitro. Elife. 10. PMID 34463611 DOI: 10.7554/eLife.69066  0.205
2023 Sullivan SF, Shetty A, Bharadwaj T, Krishna N, Trivedi VD, Endalur Gopinarayanan V, Chappell TC, Sellers DM, Pravin Kumar R, Nair NU. Towards universal synthetic heterotrophy using a metabolic coordinator. Metabolic Engineering. PMID 37406763 DOI: 10.1016/j.ymben.2023.07.001  0.186
2020 Fulton T, Trivedi V, Attardi A, Anlas K, Dingare C, Arias AM, Steventon B. Axis Specification in Zebrafish Is Robust to Cell Mixing and Reveals a Regulation of Pattern Formation by Morphogenesis. Current Biology : Cb. 30: 3063-3064. PMID 32750336 DOI: 10.1016/j.cub.2020.07.022  0.177
2022 Sanaki-Matsumiya M, Matsuda M, Gritti N, Nakaki F, Sharpe J, Trivedi V, Ebisuya M. Periodic formation of epithelial somites from human pluripotent stem cells. Nature Communications. 13: 2325. PMID 35484123 DOI: 10.1038/s41467-022-29967-1  0.159
2020 Gritti N, Oriola D, Trivedi V. Rethinking embryology in vitro: A synergy between engineering, data science and theory. Developmental Biology. PMID 33152275 DOI: 10.1016/j.ydbio.2020.10.013  0.156
2022 Lenne PF, Trivedi V. Sculpting tissues by phase transitions. Nature Communications. 13: 664. PMID 35115507 DOI: 10.1038/s41467-022-28151-9  0.149
2021 Waschke J, Hlawitschka M, Anlas K, Trivedi V, Roeder I, Huisken J, Scherf N. linus: Conveniently explore, share, and present large-scale biological trajectory data in a web browser. Plos Computational Biology. 17: e1009503. PMID 34723958 DOI: 10.1371/journal.pcbi.1009503  0.148
2023 Lázaro J, Costanzo M, Sanaki-Matsumiya M, Girardot C, Hayashi M, Hayashi K, Diecke S, Hildebrandt TB, Lazzari G, Wu J, Petkov S, Behr R, Trivedi V, Matsuda M, Ebisuya M. A stem cell zoo uncovers intracellular scaling of developmental tempo across mammals. Cell Stem Cell. PMID 37343565 DOI: 10.1016/j.stem.2023.05.014  0.148
2022 Li JH, Trivedi V, Diz-Muñoz A. Understanding the interplay of membrane trafficking, cell surface mechanics, and stem cell differentiation. Seminars in Cell & Developmental Biology. PMID 35641408 DOI: 10.1016/j.semcdb.2022.05.010  0.146
2022 Oriola D, Marin-Riera M, Anlaş K, Gritti N, Sanaki-Matsumiya M, Aalderink G, Ebisuya M, Sharpe J, Trivedi V. Arrested coalescence of multicellular aggregates. Soft Matter. PMID 35511111 DOI: 10.1039/d2sm00063f  0.145
2022 Lei M, Trivedi VD, Nair NU, Lee K, Van Deventer JA. Flow Cytometric Evaluation of Yeast-Bacterial Cell-Cell Interactions. Biotechnology and Bioengineering. PMID 36259110 DOI: 10.1002/bit.28253  0.13
2021 Trivedi VD, Mohan K, Chappell TC, Mays ZJS, Nair NU. Cheating the Cheater: Suppressing False-Positive Enrichment during Biosensor-Guided Biocatalyst Engineering. Acs Synthetic Biology. PMID 34914365 DOI: 10.1021/acssynbio.1c00506  0.12
2016 Trivedi VD, Jangir PK, Sharma R, Phale PS. Insights into functional and evolutionary analysis of carbaryl metabolic pathway from Pseudomonas sp. strain C5pp. Scientific Reports. 6: 38430. PMID 27924916 DOI: 10.1038/srep38430  0.113
2023 Trivedi VD, Sullivan SF, Choudhury D, Endalur Gopinarayanan V, Hart T, Nair NU. Integration of metabolism and regulation reveals rapid adaptability to growth on non-native substrates. Cell Chemical Biology. PMID 37421944 DOI: 10.1016/j.chembiol.2023.06.009  0.112
2023 Liu ZY, Trivedi V, Heemskerk I. Mapping morphogenesis and mechanics in embryo models. Nature Methods. 20: 1859-1862. PMID 38057513 DOI: 10.1038/s41592-023-02079-4  0.106
2022 Trivedi VD, Chappell TC, Krishna NB, Shetty A, Sigamani GG, Mohan K, Ramesh A, Pravin KR, Nair NU. In-depth Sequence-Function Characterization Reveals Multiple Pathways to Enhance Enzymatic Activity. Acs Catalysis. 12: 2381-2396. PMID 37325394 DOI: 10.1021/acscatal.1c05508  0.104
2020 Mays ZJ, Mohan K, Trivedi VD, Chappell TC, Nair NU. Directed evolution of Anabaena variabilis phenylalanine ammonia-lyase (PAL) identifies mutants with enhanced activities. Chemical Communications (Cambridge, England). PMID 32270162 DOI: 10.1039/D0Cc00783H  0.092
2017 Trivedi V, Mishra P, Verma D. Pediatric ACL Injuries: A Review of Current Concepts. The Open Orthopaedics Journal. 11: 378-388. PMID 28603569 DOI: 10.2174/1874325001711010378  0.084
2017 Gautam K, Shetty D, Trivedi VD, Varunjikar M, Phale PS. Compartmentalization of Carbaryl Degradation Pathway: Molecular Characterization of Inducible Periplasmic Carbaryl Hydrolase from Pseudomonas spp. Applied and Environmental Microbiology. PMID 29079626 DOI: 10.1128/AEM.02115-17  0.08
2013 Sinha S, Trivedi V, Krishna A, Rao N. Dyskeratosis congenita- management and review of complications: a case report. Oman Medical Journal. 28: 281-4. PMID 23904924 DOI: 10.5001/omj.2013.78  0.075
2014 Upadhyay V, Trivedi V, Shah G, Yadav M, Shrivastav PS. Determination of mycophenolic acid in human plasma by ultra performance liquid chromatography tandem mass spectrometry. Journal of Pharmaceutical Analysis. 4: 205-216. PMID 29403884 DOI: 10.1016/j.jpha.2013.06.001  0.067
2014 Trivedi VD, Majhi P, Phale PS. Kinetic and spectroscopic characterization of 1-naphthol 2-hydroxylase from Pseudomonas sp. strain C5. Applied Biochemistry and Biotechnology. 172: 3964-77. PMID 24599669 DOI: 10.1007/s12010-014-0815-4  0.066
2012 Yadav M, Trivedi V, Upadhyay V, Shah G, Baxi GA, Goswami S, Shrivastav PS. Comparison of extraction procedures for assessment of matrix effect for selective and reliable determination of atazanavir in human plasma by LC-ESI-MS/MS. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 885: 138-49. PMID 22265353 DOI: 10.1016/j.jchromb.2011.12.031  0.063
2014 Upadhyay V, Trivedi V, Shah G, Yadav M, Shrivastav PS. Rapid and sensitive UPLC-MS-MS determination of tacrolimus in wistar rats and human blood Journal of Chromatographic Science. 52: 59-67. PMID 23264321 DOI: 10.1093/chromsci/bms205  0.062
2017 Trivedi VD, Bharadwaj A, Varunjikar MS, Singha AK, Upadhyay P, Gautam K, Phale PS. Insights into metabolism and sodium chloride adaptability of carbaryl degrading halotolerant Pseudomonas sp. strain C7. Archives of Microbiology. PMID 28374062 DOI: 10.1007/s00203-017-1363-4  0.06
2013 Singh R, Trivedi VD, Phale PS. Metabolic regulation and chromosomal localization of carbaryl degradation pathway in Pseudomonas sp. strains C4, C5 and C6. Archives of Microbiology. 195: 521-35. PMID 23728496 DOI: 10.1007/s00203-013-0903-9  0.058
2017 Trivedi VD, Jangir PK, Sharma R, Phale PS. Erratum: Insights into functional and evolutionary analysis of carbaryl metabolic pathway from Pseudomonas sp. strain C5pp. Scientific Reports. 7: 40899. PMID 28358360 DOI: 10.1038/srep40899  0.055
2017 Trivedi V, Badhwar S, Dube AS. Comparative Analysis between Podography and Radiography in the Management of Idiopathic Clubfeet by Ponseti Technique. Journal of Clinical and Diagnostic Research : Jcdr. 11: RC09-RC12. PMID 28384947 DOI: 10.7860/JCDR/2017/22358.9414  0.054
2019 Trivedi V, Shah PA, Shrivastav PS, Sanyal M. Optimization of chromatography to overcome matrix effect for reliable estimation of four small molecular drugs from biological fluids using LC-MS/MS. Biomedical Chromatography : Bmc. e4777. PMID 31826316 DOI: 10.1002/bmc.4777  0.053
2014 Singh R, Trivedi VD, Phale PS. Purification and characterization of NAD+ -dependent salicylaldehyde dehydrogenase from carbaryl-degrading Pseudomonas sp. strain C6. Applied Biochemistry and Biotechnology. 172: 806-19. PMID 24122667 DOI: 10.1007/s12010-013-0581-8  0.048
2016 Trivedi VD, Jangir PK, Sharma R, Phale PS. Draft Genome Sequence of Carbaryl-Degrading Soil Isolate Pseudomonas sp. Strain C5pp. Genome Announcements. 4. PMID 27284139 DOI: 10.1128/genomeA.00526-16  0.048
2015 Karishma M, Trivedi VD, Choudhary A, Mhatre A, Kambli P, Desai J, Phale PS. Analysis of preference for carbon source utilization among three strains of aromatic compounds degrading Pseudomonas. Fems Microbiology Letters. 362. PMID 26316546 DOI: 10.1093/femsle/fnv139  0.046
2009 Yadav M, Dixit P, Trivedi V, Gandhi A, Senger A, Guttikar S, Singhal P, Shrivastav PS. Chromatographic separation of (E)- and (Z)-isomers of entacapone and their simultaneous quantitation in human plasma by LC-ESI-MS/MS. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 877: 533-40. PMID 19167276 DOI: 10.1016/j.jchromb.2009.01.004  0.044
2013 Trivedi V, Upadhyay V, Shah G, Yadav M, Shrivastav PS, Sanyal M. Ex vivo conversion of prodrug prothionamide to its metabolite prothionamide sulfoxide with different extraction techniques and their estimation in human plasma by LC-MS/MS Bioanalysis. 5: 185-200. PMID 23330561 DOI: 10.4155/bio.12.301  0.044
2022 d'Amone L, Trivedi VD, Nair NU, Omenetto FG. A Silk-Based Platform to Stabilize Phenylalanine Ammonia-lyase for Orally Administered Enzyme Replacement Therapy. Molecular Pharmaceutics. PMID 35862031 DOI: 10.1021/acs.molpharmaceut.2c00512  0.041
2014 Mishra P, Srivastava D, Rajesh Misra, Malik VK, Trivedi V. Assessment of tear secretions in healthy Indian volunteers. Indian Journal of Physiology and Pharmacology. 58: 137-40. PMID 25509963  0.033
2014 Trivedi V, Upadhyay V, Yadav M, Shrivastav PS, Sanyal M. Impact of electrospray ion source platforms on matrix effect due to plasma phospholipids in the determination of rivastigmine by LC-MS/MS. Bioanalysis. 6: 2301-16. PMID 25383740 DOI: 10.4155/bio.14.85  0.029
2018 Ploumis A, Trivedi V, Shin JH, Wood KB, Grottkau BE. Progression of idiopathic thoracic or thoracolumbar scoliosis and pelvic obliquity in adolescent patients with and without limb length discrepancy. Scoliosis and Spinal Disorders. 13: 18. PMID 30258986 DOI: 10.1186/s13013-018-0166-y  0.027
2011 Budhiraja V, Rastogi R, Asthana AK, Sinha P, Krishna A, Trivedi V. Concurrent variations of median and musculocutaneous nerves and their clinical correlation--a cadaveric study. Italian Journal of Anatomy and Embryology = Archivio Italiano Di Anatomia Ed Embriologia. 116: 67-72. PMID 22303635  0.027
2011 Anakwenze OA, Trivedi V, Goodman AM, Ganley TJ. Concealed degloving injury (the Morel-Lavallée lesion) in childhood sports: a case report. The Journal of Bone and Joint Surgery. American Volume. 93: e148. PMID 22258783 DOI: 10.2106/JBJS.K.00219  0.01
2011 Pandey A, Bansal V, Asthana AK, Trivedi V, Madan M, Das A. Maxillary osteomyelitis by mucormycosis: report of four cases. International Journal of Infectious Diseases : Ijid : Official Publication of the International Society For Infectious Diseases. 15: e66-9. PMID 21093341 DOI: 10.1016/j.ijid.2010.09.003  0.01
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