John P Barton
Affiliations: | Physics and Astronomy | University of California, Riverside, Riverside, CA, United States |
Website:
https://profiles.ucr.edu/app/home/profile/johnpbGoogle:
"John P Barton"Bio:
https://bartonlab.ucr.edu/cv.html
https://bartonlab.ucr.edu/
DOI: 10.7282/T3Q52NFS
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Parents
Sign in to add mentor| Moshe Ronen Plesser | research assistant | 2002-2006 | Duke | |
| Joel Louis Lebowitz | grad student | 2006-2012 | Rutgers, New Brunswick | |
| (Simple models of complex systems.) | ||||
| Arup K. Chakraborty | post-doc | 2012-2017 | MIT (Chemistry Tree) | |
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Publications
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| Gao Y, Barton JP. (2025) A binary trait model reveals the fitness effects of HIV-1 escape from T cell responses. Proceedings of the National Academy of Sciences of the United States of America. 122: e2405379122 |
| Rodríguez-Horta E, Strahan J, Dinner AR, et al. (2024) Chronic infections can generate SARS-CoV-2-like bursts of viral evolution without epistasis. Biorxiv : the Preprint Server For Biology |
| Shimagaki KS, Lynch RM, Barton JP. (2024) Parallel HIV-1 evolutionary dynamics in humans and rhesus macaques who develop broadly neutralizing antibodies. Biorxiv : the Preprint Server For Biology |
| Gao Y, Barton JP. (2024) A binary trait model reveals the fitness effects of HIV-1 escape from T cell responses. Biorxiv : the Preprint Server For Biology |
| Murakowski DK, Barton JP, Peter L, et al. (2021) Adenovirus-vectored vaccine containing multidimensionally conserved parts of the HIV proteome is immunogenic in rhesus macaques. Proceedings of the National Academy of Sciences of the United States of America. 118 |
| Zhang TH, Dai L, Barton JP, et al. (2020) Predominance of positive epistasis among drug resistance-associated mutations in HIV-1 protease. Plos Genetics. 16: e1009009 |
| Ahmed SF, Quadeer AA, Barton JP, et al. (2020) Cross-serotypically conserved epitope recommendations for a universal T cell-based dengue vaccine. Plos Neglected Tropical Diseases. 14: e0008676 |
| Quadeer AA, Barton JP, Chakraborty AK, et al. (2020) Deconvolving mutational patterns of poliovirus outbreaks reveals its intrinsic fitness landscape. Nature Communications. 11: 377 |
| Quadeer AA, McKay MR, Barton JP, et al. (2019) MPF-BML: A standalone GUI-based package for maximum entropy model inference. Bioinformatics (Oxford, England) |
| Barton JP, Rajkoomar E, Mann JK, et al. (2019) Modelling and testing of the HIV-1 Nef fitness landscape. Virus Evolution. 5: vez029 |