Alika K. Maunakea, Ph.D. - Publications

Affiliations: 
Biomedical Sciences University of California, San Francisco, San Francisco, CA 
Area:
Restriction Landmark Genomic Scanning (RLGS), CpG islands

20 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Huang BZ, Binder AM, Quon B, Patel YM, Lum-Jones A, Tiirikainen M, Murphy SE, Loo L, Maunakea AK, Haiman CA, Wilkens LR, Koh WP, Cai Q, Aldrich MC, Siegmund KD, et al. Epigenome-wide association study of total nicotine equivalents in multiethnic current smokers from three prospective cohorts. American Journal of Human Genetics. PMID 38367619 DOI: 10.1016/j.ajhg.2024.01.012  0.313
2019 Corley MJ, Vargas-Maya N, Pang APS, Lum-Jones A, Li D, Khadka V, Sultana R, Blanchard DC, Maunakea AK. Epigenetic Delay in the Neurodevelopmental Trajectory of DNA Methylation States in Autism Spectrum Disorders. Frontiers in Genetics. 10: 907. PMID 31681403 DOI: 10.3389/Fgene.2019.00907  0.471
2019 Dye CK, Corley MJ, Li D, Khadka VS, Mitchell BI, Sultana R, Lum-Jones A, Shikuma CM, Ndhlovu LC, Maunakea AK. Comparative DNA methylomic analyses reveal potential origins of novel epigenetic biomarkers of insulin resistance in monocytes from virally suppressed HIV-infected adults. Clinical Epigenetics. 11: 95. PMID 31253200 DOI: 10.1186/S13148-019-0694-1  0.326
2018 Park SL, Patel YM, Loo LWM, Mullen DJ, Offringa IA, Maunakea A, Stram DO, Siegmund K, Murphy SE, Tiirikainen M, Le Marchand L. Association of internal smoking dose with blood DNA methylation in three racial/ethnic populations. Clinical Epigenetics. 10: 110. PMID 30139389 DOI: 10.1186/S13148-018-0543-7  0.318
2016 Corley MJ, Dye C, D'Antoni ML, Byron MM, Yo KL, Lum-Jones A, Nakamoto B, Valcour V, SahBandar I, Shikuma CM, Ndhlovu LC, Maunakea AK. Comparative DNA Methylation Profiling Reveals an Immunoepigenetic Signature of HIV-related Cognitive Impairment. Scientific Reports. 6: 33310. PMID 27629381 DOI: 10.1038/Srep33310  0.416
2016 Pang AP, Sugai C, Maunakea AK. High-throughput sequencing offers new insights into 5-hydroxymethylcytosine. Biomolecular Concepts. PMID 27356236 DOI: 10.1515/Bmc-2016-0011  0.417
2016 Fong KS, Hufnagel RB, Khadka VS, Corley MJ, Maunakea AK, Fogelgren B, Ahmed ZM, Lozanoff S. A mutation disrupting TET1 activity alters the expression of genes critical for neural tube closure in the tuft mouse. Disease Models & Mechanisms. PMID 26989192 DOI: 10.1242/Dmm.024109  0.319
2015 Corley MJ, Zhang W, Zheng X, Lum-Jones A, Maunakea AK. Semiconductor-based sequencing of genome-wide DNA methylation states. Epigenetics : Official Journal of the Dna Methylation Society. 10: 153-66. PMID 25602802 DOI: 10.1080/15592294.2014.1003747  0.471
2013 Kraushaar DC, Jin W, Maunakea A, Abraham B, Ha M, Zhao K. Genome-wide incorporation dynamics reveal distinct categories of turnover for the histone variant H3.3. Genome Biology. 14: R121. PMID 24176123 DOI: 10.1186/Gb-2013-14-10-R121  0.353
2013 Maunakea AK, Chepelev I, Cui K, Zhao K. Intragenic DNA methylation modulates alternative splicing by recruiting MeCP2 to promote exon recognition Cell Research. 23: 1256-1269. PMID 23938295 DOI: 10.1038/Cr.2013.110  0.49
2013 Fu H, Maunakea AK, Martin MM, Huang L, Zhang Y, Ryan M, Kim R, Lin CM, Zhao K, Aladjem MI. Methylation of histone H3 on lysine 79 associates with a group of replication origins and helps limit DNA replication once per cell cycle. Plos Genetics. 9: e1003542. PMID 23754963 DOI: 10.1371/Journal.Pgen.1003542  0.454
2013 Fu H, Maunakea AK, Martin MM, Huang L, Zhang Y, Ryan M, Kim R, Lin CM, Zhao K, Aladjem MI. Correction: Methylation of Histone H3 on Lysine 79 Associates with a Group of Replication Origins and Helps Limit DNA Replication Once per Cell Cycle Plos Genetics. 9. DOI: 10.1371/annotation/2b2d77ee-6d39-4685-b2e5-ebba0b793902  0.33
2011 Tao Y, Xi S, Shan J, Maunakea A, Che A, Briones V, Lee EY, Geiman T, Huang J, Stephens R, Leighty RM, Zhao K, Muegge K. Lsh, chromatin remodeling family member, modulates genome-wide cytosine methylation patterns at nonrepeat sequences. Proceedings of the National Academy of Sciences of the United States of America. 108: 5626-31. PMID 21427231 DOI: 10.1073/Pnas.1017000108  0.435
2010 Maunakea AK, Chepelev I, Zhao K. Epigenome mapping in normal and disease states Circulation Research. 107: 327-339. PMID 20689072 DOI: 10.1161/Circresaha.110.222463  0.461
2010 Maunakea AK, Nagarajan RP, Bilenky M, Ballinger TJ, D'Souza C, Fouse SD, Johnson BE, Hong C, Nielsen C, Zhao Y, Turecki G, Delaney A, Varhol R, Thiessen N, Shchors K, et al. Conserved role of intragenic DNA methylation in regulating alternative promoters. Nature. 466: 253-7. PMID 20613842 DOI: 10.1038/Nature09165  0.584
2009 Rinaudo P, Giritharan G, Piane Delle L, Donjacoru A, Hong C, Maunakea A, Costello JF. Effect of the Method of Conception on SHANK3 Expression and Methylation in the Hippocampus of Adult Mice. Biology of Reproduction. 81: 268-268. DOI: 10.1093/biolreprod/81.s1.268  0.449
2008 Silber J, Lim DA, Petritsch C, Persson AI, Maunakea AK, Yu M, Vandenberg SR, Ginzinger DG, James CD, Costello JF, Bergers G, Weiss WA, Alvarez-Buylla A, Hodgson JG. miR-124 and miR-137 inhibit proliferation of glioblastoma multiforme cells and induce differentiation of brain tumor stem cells. Bmc Medicine. 6: 14. PMID 18577219 DOI: 10.1186/1741-7015-6-14  0.445
2007 Reinhold WC, Reimers MA, Maunakea AK, Kim S, Lababidi S, Scherf U, Shankavaram UT, Ziegler MS, Stewart C, Kouros-Mehr H, Cui H, Dolginow D, Scudiero DA, Pommier YG, Munroe DJ, et al. Detailed DNA methylation profiles of the E-cadherin promoter in the NCI-60 cancer cells. Molecular Cancer Therapeutics. 6: 391-403. PMID 17272646 DOI: 10.1158/1535-7163.Mct-06-0609  0.369
2005 Ching TT, Maunakea AK, Jun P, Hong C, Zardo G, Pinkel D, Albertson DG, Fridlyand J, Mao JH, Shchors K, Weiss WA, Costello JF. Epigenome analyses using BAC microarrays identify evolutionary conservation of tissue-specific methylation of SHANK3. Nature Genetics. 37: 645-51. PMID 15895082 DOI: 10.1038/Ng1563  0.564
2005 Hong C, Maunakea A, Jun P, Bollen AW, Hodgson JG, Goldenberg DD, Weiss WA, Costello JF. Shared epigenetic mechanisms in human and mouse gliomas inactivate expression of the growth suppressor SLC5A8. Cancer Research. 65: 3617-23. PMID 15867356 DOI: 10.1158/0008-5472.Can-05-0048  0.53
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