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Jonathan T. Sczepanski, Ph.D. - Publications

Affiliations: 
2015- Texas A & M University, College Station, TX, United States 
Area:
Chemical biology, nucleic acid chemistry, molecular biology
Website:
https://www.sczepanskilab.com/
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29 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Zhong W, Sczepanski JT. Chimeric d/l-DNA Probes of Base Excision Repair Enable Real-Time Monitoring of Thymine DNA Glycosylase Activity in Live Cells. Journal of the American Chemical Society. PMID 37493592 DOI: 10.1021/jacs.3c03010  0.355
2023 McGregor LA, Deckard CE, Smolen JA, Porter GM, Sczepanski JT. Thymine DNA glycosylase mediates chromatin phase separation in a DNA methylation-dependent manner. The Journal of Biological Chemistry. 299: 104907. PMID 37307918 DOI: 10.1016/j.jbc.2023.104907  0.398
2023 McGregor LA, Zhu B, Goetz AM, Sczepanski JT. Thymine DNA glycosylase is an RNA-binding protein with high selectivity for G-rich sequences. The Journal of Biological Chemistry. 299: 104590. PMID 36889585 DOI: 10.1016/j.jbc.2023.104590  0.355
2021 Kabza AM, Kundu N, Zhong W, Sczepanski JT. Integration of chemically modified nucleotides with DNA strand displacement reactions for applications in living systems. Wiley Interdisciplinary Reviews. Nanomedicine and Nanobiotechnology. e1743. PMID 34328690 DOI: 10.1002/wnan.1743  0.326
2021 Kundu N, Young BE, Sczepanski JT. Kinetics of heterochiral strand displacement from PNA-DNA heteroduplexes. Nucleic Acids Research. PMID 34125895 DOI: 10.1093/nar/gkab499  0.398
2021 Deckard CE, Sczepanski JT. Reversible chromatin condensation by the DNA repair and demethylation factor thymine DNA glycosylase. Nucleic Acids Research. 49: 2450-2459. PMID 33733652 DOI: 10.1093/nar/gkab040  0.501
2020 Zhong W, Sczepanski JT. Direct Comparison of d-DNA and l-DNA Strand-Displacement Reactions in Living Mammalian Cells. Acs Synthetic Biology. PMID 33347747 DOI: 10.1021/acssynbio.0c00527  0.382
2020 Tjhung KF, Sczepanski JT, Murtfeldt ER, Joyce GF. RNA-Catalyzed Cross-Chiral Polymerization of RNA. Journal of the American Chemical Society. 142: 15331-15339. PMID 32805113 DOI: 10.1021/Jacs.0C05635  0.512
2020 Kabza AM, Sczepanski JT. l-DNA-Based Catalytic Hairpin Assembly Circuit. Molecules (Basel, Switzerland). 25. PMID 32093258 DOI: 10.3390/molecules25040947  0.343
2020 Dey S, Sczepanski JT. In vitro selection of l-DNA aptamers that bind a structured d-RNA molecule. Nucleic Acids Research. PMID 31950158 DOI: 10.1093/nar/gkz1236  0.314
2019 Banerjee DR, Deckard CE, Zeng Y, Sczepanski JT. Acetylation of the histone H3 tail domain regulates base excision repair on higher-order chromatin structures. Scientific Reports. 9: 15972. PMID 31685935 DOI: 10.1038/S41598-019-52340-0  0.69
2019 Young BE, Sczepanski JT. Heterochiral DNA Strand-Displacement Based on Chimeric D/L-Oligonucleotides. Acs Synthetic Biology. PMID 31670930 DOI: 10.1021/acssynbio.9b00335  0.342
2019 Deckard CE, Banerjee DR, Sczepanski JT. Chromatin Structure and the Pioneering Transcription Factor FOXA1 Regulate TDG-Mediated Removal of 5-Formylcytosine from DNA. Journal of the American Chemical Society. PMID 31460763 DOI: 10.1021/Jacs.9B07576  0.713
2018 Banerjee DR, Deckard Iii CE, Elinski MB, Buzbee ML, Wang WW, Batteas JD, Sczepanski JT. A Plug-and-Play Approach for Preparing Chromatin Containing Site-Specific DNA Modifications: The Influence of Chromatin Structure on Base Excision Repair. Journal of the American Chemical Society. PMID 29883113 DOI: 10.1021/Jacs.8B04063  0.724
2017 Kabza AM, Young BE, Sczepanski JT. Heterochiral DNA Strand-Displacement Circuits. Journal of the American Chemical Society. 139: 17715-17718. PMID 29182318 DOI: 10.1021/jacs.7b10038  0.401
2015 Sczepanski JT, Joyce GF. Specific Inhibition of MicroRNA Processing Using L-RNA Aptamers. Journal of the American Chemical Society. PMID 26652064 DOI: 10.1021/Jacs.5B06696  0.444
2014 Sczepanski JT, Joyce GF. A cross-chiral RNA polymerase ribozyme. Nature. 515: 440-2. PMID 25363769 DOI: 10.1038/Nature13900  0.498
2013 Sczepanski JT, Joyce GF. Binding of a structured D-RNA molecule by an L-RNA aptamer. Journal of the American Chemical Society. 135: 13290-3. PMID 23977945 DOI: 10.1021/Ja406634G  0.475
2013 Zhou C, Sczepanski JT, Greenberg MM. Histone modification via rapid cleavage of C4'-oxidized abasic sites in nucleosome core particles. Journal of the American Chemical Society. 135: 5274-7. PMID 23531104 DOI: 10.1021/Ja400915W  0.64
2013 Sczepanski JT, Zhou C, Greenberg MM. Nucleosome core particle-catalyzed strand scission at abasic sites. Biochemistry. 52: 2157-64. PMID 23480734 DOI: 10.1021/Bi3010076  0.606
2012 Sczepanski JT, Joyce GF. Synthetic evolving systems that implement a user-specified genetic code of arbitrary design. Chemistry & Biology. 19: 1324-32. PMID 23102225 DOI: 10.1016/J.Chembiol.2012.08.017  0.477
2012 Zhou C, Sczepanski JT, Greenberg MM. Mechanistic studies on histone catalyzed cleavage of apyrimidinic/apurinic sites in nucleosome core particles. Journal of the American Chemical Society. 134: 16734-41. PMID 23020793 DOI: 10.1021/Ja306858M  0.64
2011 Sczepanski JT, Hiemstra CN, Greenberg MM. Probing DNA interstrand cross-link formation by an oxidized abasic site using nonnative nucleotides. Bioorganic & Medicinal Chemistry. 19: 5788-93. PMID 21903404 DOI: 10.1016/J.Bmc.2011.08.024  0.554
2010 Sczepanski JT, Wong RS, McKnight JN, Bowman GD, Greenberg MM. Rapid DNA-protein cross-linking and strand scission by an abasic site in a nucleosome core particle. Proceedings of the National Academy of Sciences of the United States of America. 107: 22475-80. PMID 21149689 DOI: 10.1073/Pnas.1012860108  0.633
2010 Wong RS, Sczepanski JT, Greenberg MM. Excision of a lyase-resistant oxidized abasic lesion from DNA. Chemical Research in Toxicology. 23: 766-70. PMID 20232790 DOI: 10.1021/Tx9003984  0.547
2009 Sczepanski JT, Jacobs AC, Majumdar A, Greenberg MM. Scope and mechanism of interstrand cross-link formation by the C4'-oxidized abasic site. Journal of the American Chemical Society. 131: 11132-9. PMID 19722676 DOI: 10.1021/Ja903404V  0.561
2009 Newman CA, Resendiz MJ, Sczepanski JT, Greenberg MM. Photochemical generation and reactivity of the 5,6-dihydrouridin-6-yl radical. The Journal of Organic Chemistry. 74: 7007-12. PMID 19691299 DOI: 10.1021/Jo9012805  0.422
2009 Sczepanski JT, Jacobs AC, Van Houten B, Greenberg MM. Double-strand break formation during nucleotide excision repair of a DNA interstrand cross-link. Biochemistry. 48: 7565-7. PMID 19606890 DOI: 10.1021/Bi901006B  0.596
2008 Sczepanski JT, Jacobs AC, Greenberg MM. Self-promoted DNA interstrand cross-link formation by an abasic site. Journal of the American Chemical Society. 130: 9646-7. PMID 18593126 DOI: 10.1021/Ja8030642  0.583
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