| Year |
Citation |
Score |
| 2024 |
Yang L, Lawhorn S, Bongrand C, Kosmopoulos JC, Kuwabara J, VanNieuwenhze M, Mandel MJ, McFall-Ngai M, Ruby E. Bacterial growth dynamics in a rhythmic symbiosis. Molecular Biology of the Cell. mbcE24010044. PMID 38598294 DOI: 10.1091/mbc.E24-01-0044 |
0.676 |
|
| 2022 |
Gundlach KA, Nawroth J, Kanso E, Nasrin F, Ruby EG, McFall-Ngai M. Ciliated epithelia are key elements in the recruitment of bacterial partners in the squid-vibrio symbiosis. Frontiers in Cell and Developmental Biology. 10: 974213. PMID 36340026 DOI: 10.3389/fcell.2022.974213 |
0.365 |
|
| 2022 |
Lynch JB, James N, McFall-Ngai M, Ruby EG, Shin S, Takagi D. Transitioning to confined spaces impacts bacterial swimming and escape response. Biophysical Journal. PMID 35398019 DOI: 10.1016/j.bpj.2022.04.008 |
0.3 |
|
| 2022 |
Bongrand C, Koch E, Mende D, Romano A, Lawhorn S, McFall-Ngai M, DeLong EF, Ruby EG. Evidence of Genomic Diversification in a Natural Symbiotic Population Within Its Host. Frontiers in Microbiology. 13: 854355. PMID 35300477 DOI: 10.3389/fmicb.2022.854355 |
0.359 |
|
| 2022 |
Lynch JB, Bennett BD, Merrill BD, Ruby EG, Hryckowian AJ. Independent host- and bacterium-based determinants protect a model symbiosis from phage predation. Cell Reports. 38: 110376. PMID 35172163 DOI: 10.1016/j.celrep.2022.110376 |
0.369 |
|
| 2021 |
Visick KL, Stabb EV, Ruby EG. A lasting symbiosis: how Vibrio fischeri finds a squid partner and persists within its natural host. Nature Reviews. Microbiology. PMID 34089008 DOI: 10.1038/s41579-021-00557-0 |
0.37 |
|
| 2020 |
Moriano-Gutierrez S, Bongrand C, Essock-Burns T, Wu L, McFall-Ngai MJ, Ruby EG. The noncoding small RNA SsrA is released by Vibrio fischeri and modulates critical host responses. Plos Biology. 18: e3000934. PMID 33141816 DOI: 10.1371/journal.pbio.3000934 |
0.448 |
|
| 2020 |
Koch EJ, Bongrand C, Bennett BD, Lawhorn S, Moriano-Gutierrez S, Pende M, Vadiwala K, Dodt HU, Raible F, Goldman W, Ruby EG, McFall-Ngai M. The cytokine MIF controls daily rhythms of symbiont nutrition in an animal-bacterial association. Proceedings of the National Academy of Sciences of the United States of America. PMID 33067391 DOI: 10.1073/pnas.2016864117 |
0.362 |
|
| 2020 |
Bennett BD, Essock-Burns T, Ruby EG. HbtR, a Heterofunctional Homolog of the Virulence Regulator TcpP, Facilitates the Transition between Symbiotic and Planktonic Lifestyles in Vibrio fischeri. Mbio. 11. PMID 32873761 DOI: 10.1128/Mbio.01624-20 |
0.518 |
|
| 2020 |
Koch EJ, Moriano-Gutierrez S, Ruby EG, McFall-Ngai M, Liebeke M. The impact of persistent colonization by on the metabolome of the host squid . The Journal of Experimental Biology. PMID 32616546 DOI: 10.1242/Jeb.212860 |
0.418 |
|
| 2020 |
Essock-Burns T, Bongrand C, Goldman WE, Ruby EG, McFall-Ngai MJ. Interactions of Symbiotic Partners Drive the Development of a Complex Biogeography in the Squid-Vibrio Symbiosis. Mbio. 11. PMID 32457244 DOI: 10.1128/Mbio.00853-20 |
0.482 |
|
| 2020 |
Cohen SK, Aschtgen MS, Lynch JB, Koehler S, Chen F, Escrig S, Daraspe J, Ruby EG, Meibom A, McFall-Ngai M. Tracking the cargo of extracellular symbionts into host tissues with correlated electron microscopy and nanoscale secondary ion mass spectrometry imaging. Cellular Microbiology. 22: e13177. PMID 32185893 DOI: 10.1111/Cmi.13177 |
0.752 |
|
| 2020 |
Bongrand C, Moriano-Gutierrez S, Arevalo P, McFall-Ngai M, Visick KL, Polz M, Ruby EG. Using Colonization Assays and Comparative Genomics To Discover Symbiosis Behaviors and Factors in Vibrio fischeri. Mbio. 11. PMID 32127462 DOI: 10.1128/Mbio.03407-19 |
0.481 |
|
| 2019 |
Aschtgen MS, Brennan CA, Nikolakakis K, Cohen S, McFall-Ngai M, Ruby EG. Insights into flagellar function and mechanism from the squid-vibrio symbiosis. Npj Biofilms and Microbiomes. 5: 32. PMID 31666982 DOI: 10.1038/s41522-019-0106-5 |
0.748 |
|
| 2019 |
Bongrand C, Ruby EG. The impact of Vibrio fischeri strain variation on host colonization. Current Opinion in Microbiology. 50: 15-19. PMID 31593868 DOI: 10.1016/J.Mib.2019.09.002 |
0.518 |
|
| 2019 |
Schwartzman JA, Lynch JB, Flores Ramos S, Zhou L, Apicella MA, Yew JY, Ruby EG. Acidic pH promotes lipopolysaccharide modification and alters colonization in a bacteria-animal mutualism. Molecular Microbiology. PMID 31400167 DOI: 10.1111/Mmi.14365 |
0.446 |
|
| 2019 |
Lynch JB, Schwartzman JA, Bennett BD, McAnulty SJ, Knop M, Nyholm SV, Ruby EG. Ambient pH alters protein content of outer membrane vesicles, driving host development in a beneficial symbiosis. Journal of Bacteriology. PMID 31331976 DOI: 10.1128/Jb.00319-19 |
0.477 |
|
| 2019 |
Moriano-Gutierrez S, Koch EJ, Bussan H, Romano K, Belcaid M, Rey FE, Ruby EG, McFall-Ngai MJ. Critical symbiont signals drive both local and systemic changes in diel and developmental host gene expression. Proceedings of the National Academy of Sciences of the United States of America. PMID 30833394 DOI: 10.1073/Pnas.1819897116 |
0.496 |
|
| 2018 |
Bongrand C, Ruby EG. Achieving a multi-strain symbiosis: strain behavior and infection dynamics. The Isme Journal. PMID 30353039 DOI: 10.1038/S41396-018-0305-8 |
0.411 |
|
| 2018 |
Kremer N, Koch EJ, El Filali A, Zhou L, Heath-Heckman EAC, Ruby EG, McFall-Ngai MJ. Persistent Interactions with Bacterial Symbionts Direct Mature-Host Cell Morphology and Gene Expression in the Squid-Vibrio Symbiosis. Msystems. 3. PMID 30320217 DOI: 10.1128/mSystems.00165-18 |
0.45 |
|
| 2018 |
Koehler S, Gaedeke R, Thompson C, Bongrand C, Visick K, Ruby E, McFall-Ngai M. The model squid-vibrio symbiosis provides a window into the impact of strain- and species-level differences during the initial stages of symbiont engagement. Environmental Microbiology. PMID 30136358 DOI: 10.1111/1462-2920.14392 |
0.411 |
|
| 2017 |
Nawroth JC, Guo H, Koch E, Heath-Heckman EAC, Hermanson JC, Ruby EG, Dabiri JO, Kanso E, McFall-Ngai M. Motile cilia create fluid-mechanical microhabitats for the active recruitment of the host microbiome. Proceedings of the National Academy of Sciences of the United States of America. PMID 28835539 DOI: 10.1073/Pnas.1706926114 |
0.408 |
|
| 2017 |
Pan S, Nikolakakis K, Adamczyk PA, Pan M, Ruby EG, Reed JL. Model-enabled gene search (MEGS) allows fast and direct discovery of enzymatic and transport gene functions in the marine bacterium Vibrio fischeri. The Journal of Biological Chemistry. PMID 28446608 DOI: 10.1074/Jbc.M116.763193 |
0.349 |
|
| 2017 |
Chen F, Krasity BC, Peyer SM, Koehler S, Ruby EG, Zhang X, McFall-Ngai MJ. Bactericidal Permeability-Increasing Proteins Shape Host-Microbe Interactions. Mbio. 8. PMID 28377525 DOI: 10.1128/Mbio.00040-17 |
0.405 |
|
| 2017 |
Thompson LR, Nikolakakis K, Pan S, Reed J, Knight R, Ruby EG. Transcriptional characterization of Vibrio fischeri during colonization of juvenile Euprymna scolopes. Environmental Microbiology. PMID 28152560 DOI: 10.1111/1462-2920.13684 |
0.439 |
|
| 2017 |
Pan S, Nikolakakis K, Ruby E, Reed J. Using a Genome-Scale Model and Genomic Library to Discover the Functions of Metabolic Genes Biophysical Journal. 112: 342a. DOI: 10.1016/J.Bpj.2016.11.1855 |
0.387 |
|
| 2016 |
Aschtgen MS, Lynch JB, Koch E, Schwartzman J, McFall-Ngai M, Ruby E. Rotation of Vibrio fischeri flagella produces outer membrane vesicles that induce host development. Journal of Bacteriology. PMID 27246572 DOI: 10.1128/Jb.00101-16 |
0.748 |
|
| 2016 |
Bongrand C, Koch EJ, Moriano-Gutierrez S, Cordero OX, McFall-Ngai M, Polz MF, Ruby EG. A genomic comparison of 13 symbiotic Vibrio fischeri isolates from the perspective of their host source and colonization behavior. The Isme Journal. PMID 27128997 DOI: 10.1038/Ismej.2016.69 |
0.431 |
|
| 2016 |
Schwartzman JA, Ruby EG. Stress as a Normal Cue in the Symbiotic Environment. Trends in Microbiology. PMID 27004825 DOI: 10.1016/J.Tim.2016.02.012 |
0.343 |
|
| 2016 |
Schwartzman JA, Ruby EG. A conserved chemical dialog of mutualism: lessons from squid and vibrio. Microbes and Infection / Institut Pasteur. 18: 1-10. PMID 26384815 DOI: 10.1016/J.Micinf.2015.08.016 |
0.358 |
|
| 2016 |
Nikolakakis K, Monfils K, Moriano-Gutierrez S, Brennan CA, Ruby EG. Characterization of the Vibrio fischeri fatty acid chemoreceptors, VfcB and VfcB2 Applied and Environmental Microbiology. 82: 696-704. DOI: 10.1128/Aem.02856-15 |
0.348 |
|
| 2015 |
Alivisatos AP, Blaser MJ, Brodie EL, Chun M, Dangl JL, Donohue TJ, Dorrestein PC, Gilbert JA, Green JL, Jansson JK, Knight R, Maxon ME, McFall-Ngai MJ, Miller JF, Pollard KS, ... Ruby EG, et al. MICROBIOME. A unified initiative to harness Earth's microbiomes. Science (New York, N.Y.). 350: 507-8. PMID 26511287 DOI: 10.1126/Science.Aac8480 |
0.346 |
|
| 2015 |
Aschtgen MS, Wetzel K, Goldman W, McFall-Ngai M, Ruby E. Vibrio fischeri-derived outer membrane vesicles trigger host development. Cellular Microbiology. PMID 26399913 DOI: 10.1111/Cmi.12525 |
0.766 |
|
| 2015 |
Pan M, Schwartzman JA, Dunn AK, Lu Z, Ruby EG. A Single Host-Derived Glycan Impacts Key Regulatory Nodes of Symbiont Metabolism in a Coevolved Mutualism. Mbio. 6. PMID 26173698 DOI: 10.1128/Mbio.00811-15 |
0.403 |
|
| 2015 |
Schwartzman JA, Koch E, Heath-Heckman EA, Zhou L, Kremer N, McFall-Ngai MJ, Ruby EG. The chemistry of negotiation: rhythmic, glycan-driven acidification in a symbiotic conversation. Proceedings of the National Academy of Sciences of the United States of America. 112: 566-71. PMID 25550509 DOI: 10.1073/Pnas.1418580112 |
0.507 |
|
| 2015 |
Nikolakakis K, Lehnert E, McFall-Ngai MJ, Ruby EG. Use of hybridization chain reaction-fluorescent in situ hybridization to track gene expression by both partners during initiation of symbiosis Applied and Environmental Microbiology. 81: 4728-4735. DOI: 10.1128/Aem.00890-15 |
0.457 |
|
| 2014 |
Miyashiro T, Oehlert D, Ray VA, Visick KL, Ruby EG. The putative oligosaccharide translocase SypK connects biofilm formation with quorum signaling in Vibrio fischeri. Microbiologyopen. 3: 836-48. PMID 25257018 DOI: 10.1002/mbo3.199 |
0.326 |
|
| 2014 |
Kremer N, Schwartzman J, Augustin R, Zhou L, Ruby EG, Hourdez S, McFall-Ngai MJ. The dual nature of haemocyanin in the establishment and persistence of the squid-vibrio symbiosis. Proceedings. Biological Sciences / the Royal Society. 281: 20140504. PMID 24807261 DOI: 10.1098/Rspb.2014.0504 |
0.368 |
|
| 2014 |
Brennan CA, Hunt JR, Kremer N, Krasity BC, Apicella MA, McFall-Ngai MJ, Ruby EG. A model symbiosis reveals a role for sheathed-flagellum rotation in the release of immunogenic lipopolysaccharide. Elife. 3: e01579. PMID 24596150 DOI: 10.7554/Elife.01579 |
0.432 |
|
| 2014 |
Studer SV, Schwartzman JA, Ho JS, Geske GD, Blackwell HE, Ruby EG. Non-native acylated homoserine lactones reveal that LuxIR quorum sensing promotes symbiont stability. Environmental Microbiology. 16: 2623-34. PMID 24191970 DOI: 10.1111/1462-2920.12322 |
0.434 |
|
| 2014 |
Koch EJ, Miyashiro T, McFall-Ngai MJ, Ruby EG. Features governing symbiont persistence in the squid-vibrio association. Molecular Ecology. 23: 1624-34. PMID 24118200 DOI: 10.1111/Mec.12474 |
0.487 |
|
| 2013 |
Kremer N, Philipp EE, Carpentier MC, Brennan CA, Kraemer L, Altura MA, Augustin R, Häsler R, Heath-Heckman EA, Peyer SM, Schwartzman J, Rader BA, Ruby EG, Rosenstiel P, McFall-Ngai MJ. Initial symbiont contact orchestrates host-organ-wide transcriptional changes that prime tissue colonization. Cell Host & Microbe. 14: 183-94. PMID 23954157 DOI: 10.1016/J.Chom.2013.07.006 |
0.48 |
|
| 2013 |
Brennan CA, Mandel MJ, Gyllborg MC, Thomasgard KA, Ruby EG. Genetic determinants of swimming motility in the squid light-organ symbiont Vibrio fischeri. Microbiologyopen. 2: 576-94. PMID 23907990 DOI: 10.1002/mbo3.96 |
0.704 |
|
| 2013 |
Altura MA, Heath-Heckman EA, Gillette A, Kremer N, Krachler AM, Brennan C, Ruby EG, Orth K, McFall-Ngai MJ. The first engagement of partners in the Euprymna scolopes-Vibrio fischeri symbiosis is a two-step process initiated by a few environmental symbiont cells. Environmental Microbiology. 15: 2937-50. PMID 23819708 DOI: 10.1111/1462-2920.12179 |
0.473 |
|
| 2013 |
McFall-Ngai M, Hadfield MG, Bosch TC, Carey HV, Domazet-Lošo T, Douglas AE, Dubilier N, Eberl G, Fukami T, Gilbert SF, Hentschel U, King N, Kjelleberg S, Knoll AH, Kremer N, ... ... Ruby EG, et al. Animals in a bacterial world, a new imperative for the life sciences. Proceedings of the National Academy of Sciences of the United States of America. 110: 3229-36. PMID 23391737 DOI: 10.1073/Pnas.1218525110 |
0.385 |
|
| 2012 |
Mandel MJ, Schaefer AL, Brennan CA, Heath-Heckman EA, Deloney-Marino CR, McFall-Ngai MJ, Ruby EG. Squid-derived chitin oligosaccharides are a chemotactic signal during colonization by Vibrio fischeri. Applied and Environmental Microbiology. 78: 4620-6. PMID 22522684 DOI: 10.1128/Aem.00377-12 |
0.739 |
|
| 2012 |
Miyashiro T, Ruby EG. Shedding light on bioluminescence regulation in Vibrio fischeri. Molecular Microbiology. 84: 795-806. PMID 22500943 DOI: 10.1111/J.1365-2958.2012.08065.X |
0.452 |
|
| 2012 |
Post DM, Yu L, Krasity BC, Choudhury B, Mandel MJ, Brennan CA, Ruby EG, McFall-Ngai MJ, Gibson BW, Apicella MA. O-antigen and core carbohydrate of Vibrio fischeri lipopolysaccharide: composition and analysis of their role in Euprymna scolopes light organ colonization. The Journal of Biological Chemistry. 287: 8515-30. PMID 22247546 DOI: 10.1074/Jbc.M111.324012 |
0.652 |
|
| 2012 |
Cao X, Studer SV, Wassarman K, Zhang Y, Ruby EG, Miyashiro T. The novel sigma factor-like regulator RpoQ controls luminescence, chitinase activity, and motility in Vibrio fischeri. Mbio. 3. PMID 22233679 DOI: 10.1128/Mbio.00285-11 |
0.484 |
|
| 2012 |
Wollenberg MS, Preheim SP, Polz MF, Ruby EG. Polyphyly of non-bioluminescent Vibrio fischeri sharing a lux-locus deletion Environmental Microbiology. 14: 655-668. PMID 21980988 DOI: 10.1111/J.1462-2920.2011.02608.X |
0.439 |
|
| 2012 |
Wollenberg MS, Ruby EG. Phylogeny and fitness of Vibrio fischeri from the light organs of Euprymna scolopes in two Oahu, Hawaii populations. The Isme Journal. 6: 352-62. PMID 21776028 DOI: 10.1038/Ismej.2011.92 |
0.414 |
|
| 2011 |
Miyashiro T, Klein W, Oehlert D, Cao X, Schwartzman J, Ruby EG. The N-acetyl-D-glucosamine repressor NagC of Vibrio fischeri facilitates colonization of Euprymna scolopes. Molecular Microbiology. 82: 894-903. PMID 21992506 DOI: 10.1111/J.1365-2958.2011.07858.X |
0.439 |
|
| 2011 |
Septer AN, Wang Y, Ruby EG, Stabb EV, Dunn AK. The haem-uptake gene cluster in Vibrio fischeri is regulated by Fur and contributes to symbiotic colonization. Environmental Microbiology. 13: 2855-64. PMID 21883801 DOI: 10.1111/J.1462-2920.2011.02558.X |
0.461 |
|
| 2011 |
Wang Y, Ruby EG. The roles of NO in microbial symbioses. Cellular Microbiology. 13: 518-26. PMID 21338463 DOI: 10.1111/J.1462-5822.2011.01576.X |
0.441 |
|
| 2010 |
Pollack-Berti A, Wollenberg MS, Ruby EG. Natural transformation of Vibrio fischeri requires tfoX and tfoY. Environmental Microbiology. 12: 2302-11. PMID 21966921 DOI: 10.1111/J.1462-2920.2010.02250.X |
0.405 |
|
| 2010 |
Wang Y, Dunn AK, Wilneff J, McFall-Ngai MJ, Spiro S, Ruby EG. Vibrio fischeri flavohaemoglobin protects against nitric oxide during initiation of the squid-Vibrio symbiosis. Molecular Microbiology. 78: 903-15. PMID 20815823 DOI: 10.1111/J.1365-2958.2010.07376.X |
0.479 |
|
| 2010 |
Miyashiro T, Wollenberg MS, Cao X, Oehlert D, Ruby EG. A single qrr gene is necessary and sufficient for LuxO-mediated regulation in Vibrio fischeri. Molecular Microbiology. 77: 1556-67. PMID 20662783 DOI: 10.1111/J.1365-2958.2010.07309.X |
0.412 |
|
| 2010 |
Dunn AK, Karr EA, Wang Y, Batton AR, Ruby EG, Stabb EV. The alternative oxidase (AOX) gene in Vibrio fischeri is controlled by NsrR and upregulated in response to nitric oxide. Molecular Microbiology. 77: 44-55. PMID 20487270 DOI: 10.1111/J.1365-2958.2010.07194.X |
0.352 |
|
| 2010 |
Wang Y, Dufour YS, Carlson HK, Donohue TJ, Marletta MA, Ruby EG. H-NOX-mediated nitric oxide sensing modulates symbiotic colonization by Vibrio fischeri. Proceedings of the National Academy of Sciences of the United States of America. 107: 8375-80. PMID 20404170 DOI: 10.1073/Pnas.1003571107 |
0.516 |
|
| 2010 |
Wier AM, Nyholm SV, Mandel MJ, Massengo-Tiassé RP, Schaefer AL, Koroleva I, Splinter-Bondurant S, Brown B, Manzella L, Snir E, Almabrazi H, Scheetz TE, Bonaldo Mde F, Casavant TL, Soares MB, ... ... Ruby EG, et al. Transcriptional patterns in both host and bacterium underlie a daily rhythm of anatomical and metabolic change in a beneficial symbiosis. Proceedings of the National Academy of Sciences of the United States of America. 107: 2259-64. PMID 20133870 DOI: 10.1073/Pnas.0909712107 |
0.715 |
|
| 2010 |
Goodrich-Blair H, Ané JM, Bever JD, Bordenstein SR, Bright M, Chaston JM, Clay K, Currie CR, Douglas AE, Gerardo N, Harrison MJ, Ley RE, McFall-Ngai M, Mukherjee A, Rader B, ... ... Ruby EG, et al. Symbiosis research, technology, and education: Proceedings of the 6th International Symbiosis Society Congress held in Madison Wisconsin, USA, August 2009 Symbiosis. 51: 1-12. DOI: 10.1007/S13199-010-0076-0 |
0.331 |
|
| 2009 |
Nyholm SV, Stewart JJ, Ruby EG, McFall-Ngai MJ. Recognition between symbiotic Vibrio fischeri and the haemocytes of Euprymna scolopes. Environmental Microbiology. 11: 483-93. PMID 19196278 DOI: 10.1111/J.1462-2920.2008.01788.X |
0.513 |
|
| 2009 |
Mandel MJ, Wollenberg MS, Stabb EV, Visick KL, Ruby EG. A single regulatory gene is sufficient to alter bacterial host range. Nature. 458: 215-8. PMID 19182778 DOI: 10.1038/Nature07660 |
0.758 |
|
| 2009 |
Wollenberg MS, Ruby EG. Population structure of vibrio fischeri within the light organs of euprymna scolopes squid from two oahu (Hawaii) populations Applied and Environmental Microbiology. 75: 193-202. PMID 18997024 DOI: 10.1128/Aem.01792-08 |
0.386 |
|
| 2008 |
Ruby EG. Symbiotic conversations are revealed under genetic interrogation. Nature Reviews. Microbiology. 6: 752-62. PMID 18794913 DOI: 10.1038/Nrmicro1958 |
0.379 |
|
| 2008 |
Chun CK, Troll JV, Koroleva I, Brown B, Manzella L, Snir E, Almabrazi H, Scheetz TE, Bonaldo Mde F, Casavant TL, Soares MB, Ruby EG, McFall-Ngai MJ. Effects of colonization, luminescence, and autoinducer on host transcription during development of the squid-vibrio association. Proceedings of the National Academy of Sciences of the United States of America. 105: 11323-8. PMID 18682555 DOI: 10.1073/Pnas.0802369105 |
0.542 |
|
| 2008 |
Studer SV, Mandel MJ, Ruby EG. AinS quorum sensing regulates the Vibrio fischeri acetate switch. Journal of Bacteriology. 190: 5915-23. PMID 18487321 DOI: 10.1128/Jb.00148-08 |
0.693 |
|
| 2008 |
Mandel MJ, Stabb EV, Ruby EG. Comparative genomics-based investigation of resequencing targets in Vibrio fischeri: focus on point miscalls and artefactual expansions. Bmc Genomics. 9: 138. PMID 18366731 DOI: 10.1186/1471-2164-9-138 |
0.608 |
|
| 2008 |
Adin DM, Phillips NJ, Gibson BW, Apicella MA, Ruby EG, McFall-Ngai MJ, Hall DB, Stabb EV. Characterization of htrB and msbB mutants of the light organ symbiont Vibrio fischeri. Applied and Environmental Microbiology. 74: 633-44. PMID 18065606 DOI: 10.1128/Aem.02138-07 |
0.494 |
|
| 2007 |
Antunes LC, Schaefer AL, Ferreira RB, Qin N, Stevens AM, Ruby EG, Greenberg EP. Transcriptome analysis of the Vibrio fischeri LuxR-LuxI regulon. Journal of Bacteriology. 189: 8387-91. PMID 17827287 DOI: 10.1128/Jb.00736-07 |
0.41 |
|
| 2007 |
Hussa EA, O'Shea TM, Darnell CL, Ruby EG, Visick KL. Two-component response regulators of Vibrio fischeri: identification, mutagenesis, and characterization. Journal of Bacteriology. 189: 5825-38. PMID 17586650 DOI: 10.1128/Jb.00242-07 |
0.479 |
|
| 2007 |
Nelson EJ, Tunsjø HS, Fidopiastis PM, Sørum H, Ruby EG. A novel lux operon in the cryptically bioluminescent fish pathogen Vibrio salmonicida is associated with virulence. Applied and Environmental Microbiology. 73: 1825-33. PMID 17277225 DOI: 10.1128/Aem.02255-06 |
0.801 |
|
| 2007 |
Whistler CA, Koropatnick TA, Pollack A, McFall-Ngai MJ, Ruby EG. The GacA global regulator of Vibrio fischeri is required for normal host tissue responses that limit subsequent bacterial colonization. Cellular Microbiology. 9: 766-78. PMID 17081194 DOI: 10.1111/J.1462-5822.2006.00826.X |
0.523 |
|
| 2006 |
Visick KL, Ruby EG. Vibrio fischeri and its host: it takes two to tango. Current Opinion in Microbiology. 9: 632-8. PMID 17049299 DOI: 10.1016/J.Mib.2006.10.001 |
0.467 |
|
| 2006 |
Sycuro LK, Ruby EG, McFall-Ngai M. Confocal microscopy of the light organ crypts in juvenile Euprymna scolopes reveals their morphological complexity and dynamic function in symbiosis. Journal of Morphology. 267: 555-68. PMID 16429442 DOI: 10.1002/Jmor.10422 |
0.405 |
|
| 2005 |
Lupp C, Ruby EG. Vibrio fischeri uses two quorum-sensing systems for the regulation of early and late colonization factors. Journal of Bacteriology. 187: 3620-9. PMID 15901683 DOI: 10.1128/Jb.187.11.3620-3629.2005 |
0.769 |
|
| 2005 |
Ruby EG, Urbanowski M, Campbell J, Dunn A, Faini M, Gunsalus R, Lostroh P, Lupp C, McCann J, Millikan D, Schaefer A, Stabb E, Stevens A, Visick K, Whistler C, et al. Complete genome sequence of Vibrio fischeri: a symbiotic bacterium with pathogenic congeners. Proceedings of the National Academy of Sciences of the United States of America. 102: 3004-9. PMID 15703294 DOI: 10.1073/Pnas.0409900102 |
0.748 |
|
| 2004 |
Millikan DS, Ruby EG. Vibrio fischeri flagellin A is essential for normal motility and for symbiotic competence during initial squid light organ colonization. Journal of Bacteriology. 186: 4315-25. PMID 15205434 DOI: 10.1128/Jb.186.13.4315-4325.2004 |
0.527 |
|
| 2004 |
Lupp C, Ruby EG. Vibrio fischeri LuxS and AinS: comparative study of two signal synthases. Journal of Bacteriology. 186: 3873-81. PMID 15175301 DOI: 10.1128/Jb.186.12.3873-3881.2004 |
0.784 |
|
| 2004 |
Ruby E, Henderson B, McFall-Ngai M. Microbiology. We get by with a little help from our (little) friends. Science (New York, N.Y.). 303: 1305-7. PMID 14988540 DOI: 10.1126/Science.1094662 |
0.423 |
|
| 2003 |
Whistler CA, Ruby EG. GacA regulates symbiotic colonization traits of Vibrio fischeri and facilitates a beneficial association with an animal host. Journal of Bacteriology. 185: 7202-12. PMID 14645281 DOI: 10.1128/Jb.185.24.7202-7212.2003 |
0.542 |
|
| 2003 |
McCann J, Stabb EV, Millikan DS, Ruby EG. Population dynamics of Vibrio fischeri during infection of Euprymna scolopes. Applied and Environmental Microbiology. 69: 5928-34. PMID 14532046 DOI: 10.1128/Aem.69.10.5928-5934.2003 |
0.521 |
|
| 2003 |
Lupp C, Urbanowski M, Greenberg EP, Ruby EG. The Vibrio fischeri quorum-sensing systems ain and lux sequentially induce luminescence gene expression and are important for persistence in the squid host. Molecular Microbiology. 50: 319-31. PMID 14507383 DOI: 10.1046/J.1365-2958.2003.T01-1-03585.X |
0.795 |
|
| 2003 |
Millikan DS, Ruby EG. FlrA, a sigma54-dependent transcriptional activator in Vibrio fischeri, is required for motility and symbiotic light-organ colonization. Journal of Bacteriology. 185: 3547-57. PMID 12775692 DOI: 10.1128/Jb.185.12.3547-3557.2003 |
0.519 |
|
| 2003 |
Miyamoto CM, Dunlap PV, Ruby EG, Meighen EA. LuxO controls luxR expression in Vibrio harveyi: evidence for a common regulatory mechanism in Vibrio. Molecular Microbiology. 48: 537-48. PMID 12675810 DOI: 10.1046/J.1365-2958.2003.03453.X |
0.451 |
|
| 2003 |
Stabb EV, Ruby EG. Contribution of pilA to competitive colonization of the squid Euprymna scolopes by Vibrio fischeri. Applied and Environmental Microbiology. 69: 820-6. PMID 12571000 DOI: 10.1128/Aem.69.2.820-826.2003 |
0.48 |
|
| 2002 |
Stabb EV, Ruby EG. RP4-based plasmids for conjugation between Escherichia coli and members of the Vibrionaceae. Methods in Enzymology. 358: 413-26. PMID 12474404 DOI: 10.1016/S0076-6879(02)58106-4 |
0.405 |
|
| 2002 |
Lupp C, Hancock RE, Ruby EG. The Vibrio fischeri sapABCDF locus is required for normal growth, both in culture and in symbiosis. Archives of Microbiology. 179: 57-65. PMID 12471505 DOI: 10.1007/S00203-002-0502-7 |
0.776 |
|
| 2002 |
Fidopiastis PM, Miyamoto CM, Jobling MG, Meighen EA, Ruby EG. LitR, a new transcriptional activator in Vibrio fischeri, regulates luminescence and symbiotic light organ colonization. Molecular Microbiology. 45: 131-43. PMID 12100554 DOI: 10.1046/J.1365-2958.2002.02996.X |
0.818 |
|
| 2002 |
Millikan DS, Ruby EG. Alterations in Vibrio fischeri motility correlate with a delay in symbiosis initiation and are associated with additional symbiotic colonization defects. Applied and Environmental Microbiology. 68: 2519-28. PMID 11976129 DOI: 10.1128/Aem.68.5.2519-2528.2002 |
0.447 |
|
| 2001 |
Aeckersberg F, Lupp C, Feliciano B, Ruby EG. Vibrio fischeri outer membrane protein OmpU plays a role in normal symbiotic colonization. Journal of Bacteriology. 183: 6590-7. PMID 11673429 DOI: 10.1128/Jb.183.22.6590-6597.2001 |
0.804 |
|
| 2001 |
Stabb EV, Reich KA, Ruby EG. Vibrio fischeri genes hvnA and hvnB encode secreted NAD+-glycohydrolases Journal of Bacteriology. 183: 309-317. PMID 11114931 DOI: 10.1128/Jb.183.1.309-317.2001 |
0.509 |
|
| 2000 |
McFall-Ngai MJ, Ruby EG. Developmental biology in marine invertebrate symbioses Current Opinion in Microbiology. 3: 603-607. PMID 11121780 DOI: 10.1016/S1369-5274(00)00147-8 |
0.452 |
|
| 2000 |
Nyholm SV, Stabb EV, Ruby EG, McFall-Ngai MJ. Establishment of an animal-bacterial association: recruiting symbiotic vibrios from the environment. Proceedings of the National Academy of Sciences of the United States of America. 97: 10231-5. PMID 10963683 DOI: 10.1073/Pnas.97.18.10231 |
0.474 |
|
| 2000 |
Graf J, Ruby EG. Novel effects of a transposon insertion in the Vibrio fischeri glnD gene: Defects in iron uptake and symbiotic persistence in addition to nitrogen utilization Molecular Microbiology. 37: 168-179. PMID 10931314 DOI: 10.1046/J.1365-2958.2000.01984.X |
0.441 |
|
| 2000 |
Visick KL, Foster J, Doino J, McFall-Ngai M, Ruby EG. Vibrio fischeri lux genes play an important role in colonization and development of the host light organ Journal of Bacteriology. 182: 4578-4586. PMID 10913092 DOI: 10.1128/Jb.182.16.4578-4586.2000 |
0.55 |
|
| 1999 |
Ruby EG. The Euprymna scolopes - Vibrio fischeri symbiosis: A biomedical model for the study of bacterial colonization of animal tissue Journal of Molecular Microbiology and Biotechnology. 1: 13-21. PMID 10941780 |
0.321 |
|
| 1999 |
Ruby EG, McFall-Ngai MJ. Oxygen-utilizing reactions and symbiotic colonization of the squid light organ by Vibrio fischeri Trends in Microbiology. 7: 414-420. PMID 10498950 DOI: 10.1016/S0966-842X(99)01588-7 |
0.484 |
|
| 1999 |
Fidopiastis PM, Sørum H, Ruby EG. Cryptic luminescence in the cold-water fish pathogen Vibrio salmonicida. Archives of Microbiology. 171: 205-9. PMID 10201098 DOI: 10.1007/S002030050700 |
0.792 |
|
| 1998 |
Nishiguchi MK, Ruby EG, McFall-Ngai MJ. Competitive dominance among strains of luminous bacteria provides an unusual form of evidence for parallel evolution in Sepiolid squid-vibrio symbioses. Applied and Environmental Microbiology. 64: 3209-13. PMID 9726861 DOI: 10.1128/Aem.64.9.3209-3213.1998 |
0.429 |
|
| 1998 |
Visick KL, Ruby EG. The periplasmic, group III catalase of Vibrio fischeri is required for normal symbiotic competence and is induced both by oxidative stress and by approach to stationary phase Journal of Bacteriology. 180: 2087-2092. PMID 9555890 DOI: 10.1128/Jb.180.8.2087-2092.1998 |
0.475 |
|
| 1998 |
Graf J, Ruby EG. Host-derived amino acids support the proliferation of symbiotic bacteria Proceedings of the National Academy of Sciences of the United States of America. 95: 1818-1822. PMID 9465100 DOI: 10.1073/Pnas.95.4.1818 |
0.455 |
|
| 1998 |
Fidopiastis PM, von Boletzky S, Ruby EG. A new niche for Vibrio logei, the predominant light organ symbiont of squids in the genus Sepiola. Journal of Bacteriology. 180: 59-64. PMID 9422593 DOI: 10.1128/Jb.180.1.59-64.1998 |
0.8 |
|
| 1998 |
McFall-Ngai MJ, Ruby EG. Sepiolids and Vibrios: When First They Meet Bioscience. 48: 257-265. DOI: 10.2307/1313352 |
0.407 |
|
| 1998 |
Ruby EG, Lee KH. The Vibrio fischeri-Euprymna scolopes light organ association: Current ecological paradigms Applied and Environmental Microbiology. 64: 805-812. DOI: 10.1128/Aem.64.3.805-812.1998 |
0.404 |
|
| 1996 |
Visick KG, Ruby EG. Construction and symbiotic competence of a luxA-deletion mutant of Vibrio fischeri Gene. 175: 89-94. PMID 8917081 DOI: 10.1016/0378-1119(96)00129-1 |
0.479 |
|
| 1996 |
Ruby EG. Lessons from a cooperative, bacterial-animal association: The Vibrio fischeri-Euprymna scolopes light organ symbiosis Annual Review of Microbiology. 50: 591-624. PMID 8905092 DOI: 10.1146/Annurev.Micro.50.1.591 |
0.517 |
|
| 1996 |
Boettcher KJ, Ruby EG, McFall-Ngai MJ. Bioluminescence in the symbiotic squid Euprymna scolopes is controlled by a daily biological rhythm Journal of Comparative Physiology - a Sensory, Neural, and Behavioral Physiology. 179: 65-73. DOI: 10.1007/Bf00193435 |
0.471 |
|
| 1995 |
Boettcher KJ, Ruby EG. Detection and quantification of Vibrio fischeri autoinducer from symbiotic squid light organs Journal of Bacteriology. 177: 1053-1058. PMID 7860584 DOI: 10.1128/Jb.177.4.1053-1058.1995 |
0.521 |
|
| 1995 |
Lee KH, Ruby EG. Symbiotic role of the viable but nonculturable state of Vibrio fischeri in Hawaiian coastal seawater Applied and Environmental Microbiology. 61: 278-283. DOI: 10.1128/Aem.61.1.278-283.1995 |
0.452 |
|
| 1994 |
Lee KH, Ruby EG. Competition between Vibrio fischeri strains during initiation and maintenance of a light organ symbiosis Journal of Bacteriology. 176: 1985-1991. PMID 8144466 DOI: 10.1128/Jb.176.7.1985-1991.1994 |
0.435 |
|
| 1994 |
Graf J, Dunlap PV, Ruby EG. Effect of transposon-induced motility mutations on colonization of the host light organ by Vibrio fischeri Journal of Bacteriology. 176: 6986-6991. PMID 7961462 DOI: 10.1128/Jb.176.22.6986-6991.1994 |
0.478 |
|
| 1994 |
Lee KH, Ruby EG. Effect of the squid host on the abundance and distribution of symbiotic Vibrio fischeri in nature Applied and Environmental Microbiology. 60: 1565-1571. DOI: 10.1128/Aem.60.5.1565-1571.1994 |
0.491 |
|
| 1994 |
Boettcher KJ, Ruby EG. Occurrence of plasmid DNA in the sepiolid squid symbiont Vibrio fischeri Current Microbiology. 29: 279-286. DOI: 10.1007/Bf01577441 |
0.467 |
|
| 1993 |
Ruby EG, Asato LM. Growth and flagellation of Vibrio fischeri during initiation of the sepiolid squid light organ symbiosis Archives of Microbiology. 159: 160-167. PMID 8439236 DOI: 10.1007/Bf00250277 |
0.481 |
|
| 1992 |
Ruby EG, McFall-Ngai MJ. A squid that glows in the night: Development of an animal-bacterial mutualism Journal of Bacteriology. 174: 4865-4870. PMID 1629148 DOI: 10.1128/Jb.174.15.4865-4870.1992 |
0.353 |
|
| 1992 |
Lee KH, Ruby EG. Detection of the light organ symbiont, Vibrio fischeri, in Hawaiian seawater by using lux gene probes Applied and Environmental Microbiology. 58: 942-947. DOI: 10.1128/Aem.58.3.942-947.1992 |
0.447 |
|
| 1991 |
Mcfall-Ngai MJ, Ruby EG. Symbiont recognition and subsequent morphogenesis as early events in an animal-bacterial mutualism Science. 254: 1491-1494. PMID 1962208 DOI: 10.1126/Science.1962208 |
0.47 |
|
| 1990 |
Gray KM, Ruby EG. Prey-derived signals regulating duration of the develomental growth phase of Bdellovibrio bacteriovorus Journal of Bacteriology. 172: 4002-4007. PMID 2193927 DOI: 10.1128/Jb.172.7.4002-4007.1990 |
0.343 |
|
| 1990 |
Boettcher KJ, Ruby EG. Depressed light emission by symbiotic Vibrio fischeri of the sepiolid squid Euprymna scolopes Journal of Bacteriology. 172: 3701-3706. PMID 2163384 DOI: 10.1128/Jb.172.7.3701-3706.1990 |
0.475 |
|
| 1989 |
Gray KM, Ruby EG. Unbalanced growth as a normal feature of development of Bdellovibrio bacteriovorus Archives of Microbiology. 152: 420-424. PMID 2818131 DOI: 10.1007/Bf00446922 |
0.308 |
|
| 1988 |
Arak Y, Ruby EG. A soluble enzyme activity that attaches free diaminopimelic acid to bdelloplast peptidoglycan Biochemistry®. 27: 2624-2629. PMID 3289615 DOI: 10.1021/Bi00407A053 |
0.316 |
|
| 1988 |
Ruby EG, McCabe JB. Metabolism of periplasmic membrane-derived oligosaccharides by the predatory bacterium Bdellovibrio bacteriovorus 109J. Journal of Bacteriology. 170: 646-52. PMID 3276663 DOI: 10.1128/Jb.170.2.646-652.1988 |
0.383 |
|
| 1981 |
Ruby EG, Wirsen CO, Jannasch HW. Chemolithotrophic Sulfur-Oxidizing Bacteria from the Galapagos Rift Hydrothermal Vents † Applied and Environmental Microbiology. 42: 317-324. DOI: 10.1128/Aem.42.2.317-324.1981 |
0.333 |
|
| 1977 |
Ruby EG, Nealson KH. A luminous bacterium that emits yellow light Science. 196: 432-434. PMID 850787 DOI: 10.1126/Science.850787 |
0.332 |
|
| 1976 |
Ruby EG, Nealson KH. Symbiotic association of Photobacterium fischeri with the marine luminous fish Monocentris japonica; a model of symbiosis based on bacterial studies Biological Bulletin. 151: 574-586. PMID 1016667 |
0.356 |
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