Ronald W. Davis - Publications

Affiliations: 
Biochemistry and Genetics Stanford University, Palo Alto, CA 
Area:
Functional Genomics
Website:
http://med.stanford.edu/profiles/Ronald_Davis/

355 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Shankar V, Wilhelmy J, Curtis EJ, Michael B, Cervantes L, Mallajosyula VA, Davis RW, Snyder M, Younis S, Robinson WH, Shankar S, Mischel PS, Bonilla H, Davis MM. Oxidative Stress is a shared characteristic of ME/CFS and Long COVID. Biorxiv : the Preprint Server For Biology. PMID 38746454 DOI: 10.1101/2024.05.04.592477  0.439
2024 Jahanbani F, Sing JC, Maynard RD, Jahanbani S, Dafoe J, Dafoe W, Jones N, Wallace KJ, Rastan A, Maecker HT, Röst HL, Snyder MP, Davis RW. Longitudinal cytokine and multi-modal health data of an extremely severe ME/CFS patient with HSD reveals insights into immunopathology, and disease severity. Frontiers in Immunology. 15: 1369295. PMID 38650940 DOI: 10.3389/fimmu.2024.1369295  0.422
2024 Taylor L, Davis R. Decolonial interventions: Intentional emergence, Black Shoals, and the pedagogical possibilities. New Directions For Student Leadership. 2024: 69-75. PMID 38454309 DOI: 10.1002/yd.20593  0.318
2023 Sandberg M, Whitman W, Greenberg J, Hingu J, Thakker P, Rong A, Bercu C, Dabagian H, Davis R, Hemal A, Tsivian M, Rodriguez AR. Risk factors for infection and acute urinary retention following transperineal prostate biopsy. International Urology and Nephrology. PMID 37902926 DOI: 10.1007/s11255-023-03854-0  0.317
2023 Lynch DH, Mournighan K, Dale M, Spangler HB, Gotelli J, Davis R, Felton K, Lingley-Brown K, Busby-Whitehead J, Batsis JA, Hanson LC. Establishing and sustaining an acute care for elders unit: An incremental journey to success. Journal of the American Geriatrics Society. PMID 37610294 DOI: 10.1111/jgs.18561  0.32
2023 Raizen DM, Mullington J, Anaclet C, Clarke G, Critchley H, Dantzer R, Davis R, Drew KL, Fessel J, Fuller PM, Gibson EM, Harrington M, Lipkin WI, Klerman EB, Klimas N, et al. Beyond the Symptom: The Biology of Fatigue. Sleep. PMID 37224457 DOI: 10.1093/sleep/zsad069  0.342
2022 Knupp KG, Scheffer IE, Ceulemans B, Sullivan J, Nickels KC, Lagae L, Guerrini R, Zuberi SM, Nabbout R, Riney K, Agarwal A, Lock M, Dai D, Farfel GM, Galer BS, ... ... Davis R, et al. Fenfluramine provides clinically meaningful reduction in frequency of drop seizures in patients with Lennox-Gastaut syndrome: interim analysis of an open-label extension study. Epilepsia. PMID 36196777 DOI: 10.1111/epi.17431  0.326
2022 Jahanbani F, Maynard RD, Sing JC, Jahanbani S, Perrino JJ, Spacek DV, Davis RW, Snyder MP. Phenotypic characteristics of peripheral immune cells of Myalgic encephalomyelitis/chronic fatigue syndrome via transmission electron microscopy: A pilot study. Plos One. 17: e0272703. PMID 35943990 DOI: 10.1371/journal.pone.0272703  0.763
2022 Oh J, Davis R. A community-based adapted exercise program to increase quality of life and self-efficacy among adults with physical disabilities: A mixed-method study. Prosthetics and Orthotics International. PMID 35833733 DOI: 10.1097/PXR.0000000000000164  0.32
2022 Knupp KG, Scheffer IE, Ceulemans B, Sullivan JE, Nickels KC, Lagae L, Guerrini R, Zuberi SM, Nabbout R, Riney K, Shore S, Agarwal A, Lock M, Farfel GM, Galer BS, ... ... Davis R, et al. Efficacy and Safety of Fenfluramine for the Treatment of Seizures Associated With Lennox-Gastaut Syndrome: A Randomized Clinical Trial. Jama Neurology. PMID 35499850 DOI: 10.1001/jamaneurol.2022.0829  0.32
2022 Striano P, Auvin S, Collins A, Horvath R, Scheffer IE, Tzadok M, Miller I, Koenig MK, Lacy A, Davis R, Garcia-Cazorla A, Saneto RP, Brandabur M, Blair S, Koutsoukos T, et al. A randomized, double-blind trial of triheptanoin for drug-resistant epilepsy in glucose transporter I deficiency syndrome (Glut1DS). Epilepsia. PMID 35441706 DOI: 10.1111/epi.17263  0.326
2021 Gil-Nagel A, Sullivan J, Ceulemans B, Wirrell E, Devinsky O, Nabbout R, Knupp KG, Scott Perry M, Polster T, Davis R, Lock M, Cortes RM, Gammaiton AR, Farfel G, Galer BS, et al. Treatment with fenfluramine in patients with Dravet syndrome has no long-term effects on weight and growth. Epilepsy & Behavior : E&B. 122: 108212. PMID 34352670 DOI: 10.1016/j.yebeh.2021.108212  0.341
2021 Suh D, Amendola MF, Reeves M, Wolfe L, Posner M, Davis R. Statins Protect Against Thrombosis of Cannulated Radiocephalic Fistulas in Diabetic Patients. Annals of Vascular Surgery. PMID 33549796 DOI: 10.1016/j.avsg.2021.01.073  0.321
2019 Xu W, Brand VR, Suresh S, Jensen MA, Davis RW, Criddle CS, St Onge RP, Hyman RW. Community members in activated sludge as determined by molecular probe technology. Water Research. 168: 115104. PMID 31639592 DOI: 10.1016/J.Watres.2019.115104  0.616
2019 Yeatts PE, Davis R, Oh J, Hwang GY. The Impact of Game Outcome on Affect of Military Wheelchair Basketball Players. Adapted Physical Activity Quarterly : Apaq. 1-10. PMID 31167541 DOI: 10.1123/apaq.2018-0164  0.321
2019 Nolan R, Kirkland C, Davis R. LGBT* After Loss: A Mixed-Method Analysis on the Effect of Partner Bereavement on Interpersonal Relationships and Subsequent Partnerships. Omega. 30222819831524. PMID 30803318 DOI: 10.1177/0030222819831524  0.346
2019 Renfroe JB, Mintz M, Davis R, Ferreira J, Dispoto S, Ferry J, Umetsu Y, Rege B, Majid O, Hussein Z, Laurenza A. Adjunctive Perampanel Oral Suspension in Pediatric Patients From ≥2 to <12 Years of Age With Epilepsy: Pharmacokinetics, Safety, Tolerability, and Efficacy. Journal of Child Neurology. 883073819827407. PMID 30739576 DOI: 10.1177/0883073819827407  0.411
2018 Pan CC, Davis R. Exploring physical self-concept perceptions in athletes with intellectual disabilities: the participation of Unified Sports experiences. International Journal of Developmental Disabilities. 65: 293-301. PMID 34141350 DOI: 10.1080/20473869.2018.1470787  0.314
2018 Li J, Kolberg K, Schlecht U, St Onge RP, Aparicio AM, Horecka J, Davis RW, Hillenmeyer ME, Harvey CJ. A biosensor-based approach reveals links between efflux pump expression and cell cycle regulation in pleiotropic drug resistance of yeast. The Journal of Biological Chemistry. PMID 30514758 DOI: 10.1074/Jbc.Ra118.003904  0.78
2018 Lakshman S, Aqua K, Stefanovic A, Djurdjevic S, Nyirády P, Osváth P, Davis R, Bullock A, Chen J, Ibañez J, Barrera G, Navarro-Puerto J. A Prospective, Single-Blind, Randomized, Phase III Study to Evaluate the Safety and Efficacy of Fibrin Sealant Grifols as an Adjunct to Hemostasis During Soft Tissue Open Surgery. Journal of Investigative Surgery : the Official Journal of the Academy of Surgical Research. 1-13. PMID 30303427 DOI: 10.1080/08941939.2018.1489917  0.32
2018 Roy KR, Smith JD, Vonesch SC, Lin G, Tu CS, Lederer AR, Chu A, Suresh S, Nguyen M, Horecka J, Tripathi A, Burnett WT, Morgan MA, Schulz J, Orsley KM, ... ... Davis RW, et al. Multiplexed precision genome editing with trackable genomic barcodes in yeast. Nature Biotechnology. PMID 29734294 DOI: 10.1038/Nbt.4137  0.61
2018 Harvey CJB, Tang M, Schlecht U, Horecka J, Fischer CR, Lin HC, Li J, Naughton B, Cherry J, Miranda M, Li YF, Chu AM, Hennessy JR, Vandova GA, Inglis D, ... ... Davis RW, et al. HEx: A heterologous expression platform for the discovery of fungal natural products. Science Advances. 4: eaar5459. PMID 29651464 DOI: 10.1126/Sciadv.Aar5459  0.8
2018 Spicer TP, Hubbs C, Vaissiere T, Collia D, Rojas C, Kilinc M, Vick K, Madoux F, Baillargeon P, Shumate J, Martemyanov KA, Page DT, Puthanveettil S, Hodder P, Davis R, et al. Improved Scalability of Neuron-Based Phenotypic Screening Assays for Therapeutic Discovery in Neuropsychiatric Disorders. Molecular Neuropsychiatry. 3: 141-150. PMID 29594133 DOI: 10.1159/000481731  0.38
2017 Jensen M, Davis R. RecJ 5' Exonuclease Digestion of Oligonucleotide Failure Strands: A "Green" Method of Trityl-On Purification. Biochemistry. PMID 28459543 DOI: 10.1021/Acs.Biochem.7B00010  0.499
2017 Vandova GA, O'Brien RV, Lowry B, Robbins TF, Fischer CR, Davis RW, Khosla C, Harvey CJ, Hillenmeyer ME. Heterologous expression of diverse propionyl-CoA carboxylases affects polyketide production in Escherichia coli. The Journal of Antibiotics. PMID 28400575 DOI: 10.1038/Ja.2017.38  0.734
2017 Smith JD, Schlecht U, Xu W, Suresh S, Horecka J, Proctor MJ, Aiyar RS, Bennett RA, Chu A, Li YF, Roy K, Davis RW, Steinmetz LM, Hyman RW, Levy SF, et al. A method for high-throughput production of sequence-verified DNA libraries and strain collections. Molecular Systems Biology. 13: 913. PMID 28193641 DOI: 10.15252/Msb.20167233  0.746
2016 Suresh S, Schlecht U, Xu W, Bray W, Miranda M, Davis RW, Nislow C, Giaever G, Lokey RS, St Onge RP. Systematic Mapping of Chemical-Genetic Interactions in Saccharomyces cerevisiae. Cold Spring Harbor Protocols. 2016: pdb.top077701. PMID 27587783 DOI: 10.1101/Pdb.Top077701  0.725
2016 Suresh S, Schlecht U, Xu W, Miranda M, Davis RW, Nislow C, Giaever G, St Onge RP. Identification of Chemical-Genetic Interactions via Parallel Analysis of Barcoded Yeast Strains. Cold Spring Harbor Protocols. 2016: pdb.prot088054. PMID 27587778 DOI: 10.1101/Pdb.Prot088054  0.721
2016 Xie B, Horecka J, Chu A, Davis RW, Becker E, Primig M. Ndt80 activates the meiotic ORC1 transcript isoform and SMA2 via a bi-directional middle sporulation element in Saccharomyces cerevisiae. Rna Biology. 0. PMID 27362276 DOI: 10.1080/15476286.2016.1191738  0.398
2016 Pan CC, Davis R, Nichols D, Hwang SH, Hsieh K. Prevalence of overweight and obesity among students with intellectual disabilities in Taiwan: A secondary analysis. Research in Developmental Disabilities. 53: 305-313. PMID 26986697 DOI: 10.1016/j.ridd.2016.02.018  0.311
2016 Smith JD, Suresh S, Schlecht U, Wu M, Wagih O, Peltz G, Davis RW, Steinmetz LM, Parts L, St Onge RP. Quantitative CRISPR interference screens in yeast identify chemical-genetic interactions and new rules for guide RNA design. Genome Biology. 17: 45. PMID 26956608 DOI: 10.1186/S13059-016-0900-9  0.564
2016 Lefterova MI, Shen P, Odegaard JI, Fung E, Chiang T, Peng G, Davis RW, Wang W, Kharrazi M, Schrijver I, Scharfe C. Next-Generation Molecular Testing of Newborn Dried Blood Spots for Cystic Fibrosis. The Journal of Molecular Diagnostics : Jmd. PMID 26847993 DOI: 10.1016/J.Jmoldx.2015.11.005  0.311
2016 Esfandyarpour R, Yang L, Koochak Z, Harris JS, Davis RW. Nanoelectronic three-dimensional (3D) nanotip sensing array for real-time, sensitive, label-free sequence specific detection of nucleic acids. Biomedical Microdevices. 18: 7. PMID 26780442 DOI: 10.1007/S10544-016-0032-8  0.313
2015 Baday M, Calamak S, Durmus NG, Davis RW, Steinmetz LM, Demirci U. Integrating Cell Phone Imaging with Magnetic Levitation (i-LEV) for Label-Free Blood Analysis at the Point-of-Living. Small (Weinheim An Der Bergstrasse, Germany). PMID 26523938 DOI: 10.1002/Smll.201501845  0.521
2015 Lee S, Davis R, Judge LW, Kwon YH, Han K, Kim J, Kim J, Kim J. Gender-Based Correlation Profiles Among the Release Factors and Distance Thrown in Paralympic Seated Shot Put. Adapted Physical Activity Quarterly : Apaq. 32: 318-30. PMID 26485736 DOI: 10.1123/Apaq.2014-0148  0.321
2015 Wilson KD, Shen P, Fung E, Karakikes I, Zhang A, InanlooRahatloo K, Odegaard J, Sallam K, Davis RW, Lui GK, Ashley EA, Scharfe C, Wu JC. A Rapid, High-Quality, Cost-Effective, Comprehensive and Expandable Targeted Next-Generation Sequencing Assay for Inherited Heart Diseases. Circulation Research. 117: 603-11. PMID 26265630 DOI: 10.1161/Circresaha.115.306723  0.368
2015 Inci F, Filippini C, Baday M, Ozen MO, Calamak S, Durmus NG, Wang S, Hanhauser E, Hobbs KS, Juillard F, Kuang PP, Vetter ML, Carocci M, Yamamoto HS, Takagi Y, ... ... Davis RW, et al. Multitarget, quantitative nanoplasmonic electrical field-enhanced resonating device (NE2RD) for diagnostics. Proceedings of the National Academy of Sciences of the United States of America. PMID 26195743 DOI: 10.1073/Pnas.1510824112  0.526
2015 Seok J, Xu W, Davis RW, Xiao W. RASA: Robust Alternative Splicing Analysis for Human Transcriptome Arrays. Scientific Reports. 5: 11917. PMID 26145443 DOI: 10.1038/Srep11917  0.329
2015 Durmus NG, Tekin HC, Guven S, Sridhar K, Arslan Yildiz A, Calibasi G, Ghiran I, Davis RW, Steinmetz LM, Demirci U. Magnetic levitation of single cells. Proceedings of the National Academy of Sciences of the United States of America. 112: E3661-8. PMID 26124131 DOI: 10.1073/Pnas.1509250112  0.531
2015 Seok J, Davis RW, Xiao W. A hybrid approach of gene sets and single genes for the prediction of survival risks with gene expression data. Plos One. 10: e0122103. PMID 25933378 DOI: 10.1371/Journal.Pone.0122103  0.362
2015 Bigdeli S, Dettloff RO, Frank CW, Davis RW, Crosby LD. A simple method for encapsulating single cells in alginate microspheres allows for direct PCR and whole genome amplification. Plos One. 10: e0117738. PMID 25689864 DOI: 10.1371/Journal.Pone.0117738  0.377
2015 Becker E, Liu Y, Lardenois A, Walther T, Horecka J, Stuparevic I, Law MJ, Lavigne R, Evrard B, Demougin P, Riffle M, Strich R, Davis RW, Pineau C, Primig M. Integrated RNA- and protein profiling of fermentation and respiration in diploid budding yeast provides insight into nutrient control of cell growth and development. Journal of Proteomics. 119: 30-44. PMID 25662576 DOI: 10.1016/J.Jprot.2015.01.015  0.358
2015 Lardenois A, Stuparevic I, Liu Y, Law MJ, Becker E, Smagulova F, Waern K, Guilleux MH, Horecka J, Chu A, Kervarrec C, Strich R, Snyder M, Davis RW, Steinmetz LM, et al. The conserved histone deacetylase Rpd3 and its DNA binding subunit Ume6 control dynamic transcript architecture during mitotic growth and meiotic development. Nucleic Acids Research. 43: 115-28. PMID 25477386 DOI: 10.1093/Nar/Gku1185  0.79
2015 Durmus NG, Tekin HC, Guven S, Sridhar K, Yildiz AA, Calibasi G, Ghiran I, Davis RW, Steinmetz LM, Demirci U. Magnetic levitation of single cells Proceedings of the National Academy of Sciences of the United States of America. 112: E3661-E3668. DOI: 10.1073/pnas.1509250112  0.427
2014 Sunaryo PL, Colaco M, Davis R, Sadeghi-Nejad H. Malpractice Litigation in the Setting of Prostate Cancer Diagnosis. Urology Practice. 2: 17-21. PMID 37537817 DOI: 10.1016/j.urpr.2014.07.004  0.317
2014 Ruder J, Legacy J, Russo G, Davis R. Neonatal citrullinemia: novel, reversible neuroimaging findings correlated with ammonia level changes. Pediatric Neurology. 51: 553-6. PMID 25266618 DOI: 10.1016/j.pediatrneurol.2014.07.010  0.337
2014 Kuehl JV, Price MN, Ray J, Wetmore KM, Esquivel Z, Kazakov AE, Nguyen M, Kuehn R, Davis RW, Hazen TC, Arkin AP, Deutschbauer A. Functional genomics with a comprehensive library of transposon mutants for the sulfate-reducing bacterium Desulfovibrio alaskensis G20. Mbio. 5: e01041-14. PMID 24865553 DOI: 10.1128/Mbio.01041-14  0.662
2014 Xu W, Krishnakumar S, Miranda M, Jensen MA, Fukushima M, Palm C, Fung E, Davis RW, St Onge RP, Hyman RW. Targeted and highly multiplexed detection of microorganisms by employing an ensemble of molecular probes. Applied and Environmental Microbiology. 80: 4153-61. PMID 24795371 DOI: 10.1128/Aem.00666-14  0.647
2014 Lee AY, St Onge RP, Proctor MJ, Wallace IM, Nile AH, Spagnuolo PA, Jitkova Y, Gronda M, Wu Y, Kim MK, Cheung-Ong K, Torres NP, Spear ED, Han MK, Schlecht U, ... ... Davis RW, et al. Mapping the cellular response to small molecules using chemogenomic fitness signatures. Science (New York, N.Y.). 344: 208-11. PMID 24723613 DOI: 10.1126/Science.1250217  0.8
2014 Horecka J, Davis RW. The 50:50 method for PCR-based seamless genome editing in yeast. Yeast (Chichester, England). 31: 103-12. PMID 24639370 DOI: 10.1002/Yea.2992  0.394
2014 Horecka J, Chu AM, Davis RW. IpO: plasmids and methods for simplified, PCR-based DNA transplant in yeast. Yeast (Chichester, England). 31: 185-93. PMID 24604451 DOI: 10.1002/Yea.3006  0.349
2014 Reiner-Benaim A, Davis RW, Juneau K. Scan statistics analysis for detection of introns in time-course tiling array data. Statistical Applications in Genetics and Molecular Biology. 13: 173-90. PMID 24572987 DOI: 10.1515/Sagmb-2013-0038  0.371
2014 Mok J, Mindrinos MN, Davis RW, Javanmard M. Digital microfluidic assay for protein detection. Proceedings of the National Academy of Sciences of the United States of America. 111: 2110-5. PMID 24449893 DOI: 10.1073/Pnas.1323998111  0.757
2014 Fu GK, Xu W, Wilhelmy J, Mindrinos MN, Davis RW, Xiao W, Fodor SP. Molecular indexing enables quantitative targeted RNA sequencing and reveals poor efficiencies in standard library preparations. Proceedings of the National Academy of Sciences of the United States of America. 111: 1891-6. PMID 24449890 DOI: 10.1073/Pnas.1323732111  0.332
2014 Jensen M, Roberts L, Johnson A, Fukushima M, Davis R. Next generation 1536-well oligonucleotide synthesizer with on-the-fly dispense. Journal of Biotechnology. 171: 76-81. PMID 24355807 DOI: 10.1016/J.Jbiotec.2013.11.027  0.45
2014 O'Brien RV, Davis RW, Khosla C, Hillenmeyer ME. Computational identification and analysis of orphan assembly-line polyketide synthases. The Journal of Antibiotics. 67: 89-97. PMID 24301183 DOI: 10.1038/Ja.2013.125  0.759
2014 Nile AH, Tripathi A, Yuan P, Mousley CJ, Suresh S, Wallace IM, Shah SD, Pohlhaus DT, Temple B, Nislow C, Giaever G, Tropsha A, Davis RW, St Onge RP, Bankaitis VA. PITPs as targets for selectively interfering with phosphoinositide signaling in cells. Nature Chemical Biology. 10: 76-84. PMID 24292071 DOI: 10.1038/Nchembio.1389  0.669
2014 O'Connor SE, Richardson C, Trescher WH, Byler DL, Sather JD, Michael EH, Urbanik KB, Richards JL, Davis R, Zupanc ML, Zupec-Kania B. The ketogenic diet for the treatment of pediatric status epilepticus. Pediatric Neurology. 50: 101-3. PMID 24287234 DOI: 10.1016/j.pediatrneurol.2013.07.020  0.321
2014 Hyman RW, Fukushima M, Jiang H, Fung E, Rand L, Johnson B, Vo KC, Caughey AB, Hilton JF, Davis RW, Giudice LC. Diversity of the vaginal microbiome correlates with preterm birth. Reproductive Sciences (Thousand Oaks, Calif.). 21: 32-40. PMID 23715799 DOI: 10.1177/1933719113488838  0.636
2013 Akhras MS, Pettersson E, Diamond L, Unemo M, Okamoto J, Davis RW, Pourmand N. The Sequencing Bead Array (SBA), a next-generation digital suspension array. Plos One. 8: e76696. PMID 24116138 DOI: 10.1371/Journal.Pone.0076696  0.326
2013 Shen P, Wang W, Chi AK, Fan Y, Davis RW, Scharfe C. Multiplex target capture with double-stranded DNA probes. Genome Medicine. 5: 50. PMID 23718862 DOI: 10.1186/Gm454  0.342
2013 Krane LS, Richards KA, Kader AK, Davis R, Balaji KC, Hemal AK. Preoperative neutrophil/lymphocyte ratio predicts overall survival and extravesical disease in patients undergoing radical cystectomy. Journal of Endourology / Endourological Society. 27: 1046-50. PMID 23517015 DOI: 10.1089/end.2012.0606  0.322
2013 Finnerty CC, Jeschke MG, Qian WJ, Kaushal A, Xiao W, Liu T, Gritsenko MA, Moore RJ, Camp DG, Moldawer LL, Elson C, Schoenfeld D, Gamelli R, Gibran N, Klein M, ... Davis R, et al. Determination of burn patient outcome by large-scale quantitative discovery proteomics. Critical Care Medicine. 41: 1421-34. PMID 23507713 DOI: 10.1097/Ccm.0B013E31827C072E  0.424
2013 Peng G, Fan Y, Palculict TB, Shen P, Ruteshouser EC, Chi AK, Davis RW, Huff V, Scharfe C, Wang W. Rare variant detection using family-based sequencing analysis. Proceedings of the National Academy of Sciences of the United States of America. 110: 3985-90. PMID 23426633 DOI: 10.1073/Pnas.1222158110  0.325
2013 Seok J, Warren HS, Cuenca AG, Mindrinos MN, Baker HV, Xu W, Richards DR, McDonald-Smith GP, Gao H, Hennessy L, Finnerty CC, López CM, Honari S, Moore EE, Minei JP, ... ... Davis RW, et al. Genomic responses in mouse models poorly mimic human inflammatory diseases. Proceedings of the National Academy of Sciences of the United States of America. 110: 3507-12. PMID 23401516 DOI: 10.1073/pnas.1222878110  0.64
2013 Zhang Y, Tibshirani R, Davis R. Classification of patients from time-course gene expression. Biostatistics (Oxford, England). 14: 87-98. PMID 22926914 DOI: 10.1093/Biostatistics/Kxs027  0.507
2013 Zhang Y, Davis R. Principal trend analysis for time-course data with applications in genomic medicine The Annals of Applied Statistics. 7: 2205-2228. DOI: 10.1214/13-Aoas659  0.343
2012 Wu M, Zheng M, Zhang W, Suresh S, Schlecht U, Fitch WL, Aronova S, Baumann S, Davis R, St.onge R, Dill DL, Peltz G. Identification of drug targets by chemogenomic and metabolomic profiling in yeast Pharmacogenetics and Genomics. 22: 877-886. PMID 23076370 DOI: 10.1097/Fpc.0B013E32835Aa888  0.484
2012 Schlecht U, St Onge RP, Walther T, François JM, Davis RW. Cationic amphiphilic drugs are potent inhibitors of yeast sporulation. Plos One. 7: e42853. PMID 22905177 DOI: 10.1371/Journal.Pone.0042853  0.34
2012 Schlecht U, Miranda M, Suresh S, Davis RW, St Onge RP. Multiplex assay for condition-dependent changes in protein-protein interactions. Proceedings of the National Academy of Sciences of the United States of America. 109: 9213-8. PMID 22615397 DOI: 10.1073/Pnas.1204952109  0.311
2012 Wang C, Krishnakumar S, Wilhelmy J, Babrzadeh F, Stepanyan L, Su LF, Levinson D, Fernandez-Viña MA, Davis RW, Davis MM, Mindrinos M. High-throughput, high-fidelity HLA genotyping with deep sequencing. Proceedings of the National Academy of Sciences of the United States of America. 109: 8676-81. PMID 22589303 DOI: 10.1073/Pnas.1206614109  0.36
2012 Babrzadeh F, Jalili R, Wang C, Shokralla S, Pierce S, Robinson-Mosher A, Nyren P, Shafer RW, Basso LC, de Amorim HV, de Oliveira AJ, Davis RW, Ronaghi M, Gharizadeh B, Stambuk BU. Whole-genome sequencing of the efficient industrial fuel-ethanol fermentative Saccharomyces cerevisiae strain CAT-1. Molecular Genetics and Genomics : Mgg. 287: 485-94. PMID 22562254 DOI: 10.1007/S00438-012-0695-7  0.373
2012 Jensen MA, Jauregui L, Davis RW. A rapid, cost-effective method of assembly and purification of synthetic DNA probes >100 bp. Plos One. 7: e34373. PMID 22493688 DOI: 10.1371/Journal.Pone.0034373  0.315
2012 Seok J, Xu W, Gao H, Davis RW, Xiao W. JETTA: junction and exon toolkits for transcriptome analysis. Bioinformatics (Oxford, England). 28: 1274-5. PMID 22433281 DOI: 10.1093/Bioinformatics/Bts134  0.336
2012 Hyman RW, St Onge RP, Kim H, Tamaresis JS, Miranda M, Aparicio AM, Fukushima M, Pourmand N, Giudice LC, Davis RW. Molecular probe technology detects bacteria without culture. Bmc Microbiology. 12: 29. PMID 22404909 DOI: 10.1186/1471-2180-12-29  0.637
2012 Seok J, Xu W, Jiang H, Davis RW, Xiao W. Knowledge-based reconstruction of mRNA transcripts with short sequencing reads for transcriptome research. Plos One. 7: e31440. PMID 22312447 DOI: 10.1371/Journal.Pone.0031440  0.367
2012 Hyman RW, Herndon CN, Jiang H, Palm C, Fukushima M, Bernstein D, Vo KC, Zelenko Z, Davis RW, Giudice LC. The dynamics of the vaginal microbiome during infertility therapy with in vitro fertilization-embryo transfer. Journal of Assisted Reproduction and Genetics. 29: 105-15. PMID 22222853 DOI: 10.1007/S10815-011-9694-6  0.607
2012 Newburger DE, Natsoulis G, Grimes S, Bell JM, Davis RW, Batzoglou S, Ji HP. The Human OligoGenome Resource: a database of oligonucleotide capture probes for resequencing target regions across the human genome. Nucleic Acids Research. 40: D1137-43. PMID 22102592 DOI: 10.1093/Nar/Gkr973  0.36
2011 Javanmard M, Davis RW. A microfluidic platform for electrical detection of DNA hybridization. Sensors and Actuators. B, Chemical. 154: 22-27. PMID 23539142 DOI: 10.1016/J.Snb.2010.03.067  0.316
2011 Hoon S, Gebbia M, Costanzo M, Davis RW, Giaever G, Nislow C. A global perspective of the genetic basis for carbonyl stress resistance. G3 (Bethesda, Md.). 1: 219-31. PMID 22384333 DOI: 10.1534/G3.111.000505  0.783
2011 Deutschbauer A, Price MN, Wetmore KM, Shao W, Baumohl JK, Xu Z, Nguyen M, Tamse R, Davis RW, Arkin AP. Evidence-based annotation of gene function in Shewanella oneidensis MR-1 using genome-wide fitness profiling across 121 conditions. Plos Genetics. 7: e1002385. PMID 22125499 DOI: 10.1371/Journal.Pgen.1002385  0.659
2011 Xiao W, Mindrinos MN, Seok J, Cuschieri J, Cuenca AG, Gao H, Hayden DL, Hennessy L, Moore EE, Minei JP, Bankey PE, Johnson JL, Sperry J, Nathens AB, Billiar TR, ... ... Davis RW, et al. A genomic storm in critically injured humans. The Journal of Experimental Medicine. 208: 2581-90. PMID 22110166 DOI: 10.1084/Jem.20111354  0.337
2011 Proctor M, Urbanus ML, Fung EL, Jaramillo DF, Davis RW, Nislow C, Giaever G. The automated cell: compound and environment screening system (ACCESS) for chemogenomic screening. Methods in Molecular Biology (Clifton, N.J.). 759: 239-69. PMID 21863492 DOI: 10.1007/978-1-61779-173-4_15  0.693
2011 Shen P, Wang W, Krishnakumar S, Palm C, Chi AK, Enns GM, Davis RW, Speed TP, Mindrinos MN, Scharfe C. High-quality DNA sequence capture of 524 disease candidate genes. Proceedings of the National Academy of Sciences of the United States of America. 108: 6549-54. PMID 21467225 DOI: 10.1073/Pnas.1018981108  0.411
2011 Xu W, Seok J, Mindrinos MN, Schweitzer AC, Jiang H, Wilhelmy J, Clark TA, Kapur K, Xing Y, Faham M, Storey JD, Moldawer LL, Maier RV, Tompkins RG, Wong WH, ... Davis RW, et al. Human transcriptome array for high-throughput clinical studies. Proceedings of the National Academy of Sciences of the United States of America. 108: 3707-12. PMID 21317363 DOI: 10.1073/Pnas.1019753108  0.361
2011 Lardenois A, Liu Y, Walther T, Chalmel F, Evrard B, Granovskaia M, Chu A, Davis RW, Steinmetz LM, Primig M. Execution of the meiotic noncoding RNA expression program and the onset of gametogenesis in yeast require the conserved exosome subunit Rrp6. Proceedings of the National Academy of Sciences of the United States of America. 108: 1058-63. PMID 21149693 DOI: 10.1073/Pnas.1016459108  0.589
2011 Wang W, Shen P, Thiyagarajan S, Lin S, Palm C, Horvath R, Klopstock T, Cutler D, Pique L, Schrijver I, Davis RW, Mindrinos M, Speed TP, Scharfe C. Identification of rare DNA variants in mitochondrial disorders with improved array-based sequencing. Nucleic Acids Research. 39: 44-58. PMID 20843780 DOI: 10.1093/Nar/Gkq750  0.375
2010 Lin S, Wang W, Palm C, Davis RW, Juneau K. A molecular inversion probe assay for detecting alternative splicing. Bmc Genomics. 11: 712. PMID 21167051 DOI: 10.1186/1471-2164-11-712  0.34
2010 Zhang Y, Tibshirani RJ, Davis RW. Predicting patient survival from longitudinal gene expression. Statistical Applications in Genetics and Molecular Biology. 9: Article41. PMID 21126232 DOI: 10.2202/1544-6115.1617  0.327
2010 Oh J, Fung E, Schlecht U, Davis RW, Giaever G, St Onge RP, Deutschbauer A, Nislow C. Gene annotation and drug target discovery in Candida albicans with a tagged transposon mutant collection. Plos Pathogens. 6: e1001140. PMID 20949076 DOI: 10.1371/Journal.Ppat.1001140  0.776
2010 Hyman RW, Jiang H, Fukushima M, Davis RW. A direct comparison of the KB™ Basecaller and phred for identifying the bases from DNA sequencing using chain termination chemistry. Bmc Research Notes. 3: 257. PMID 20932319 DOI: 10.1186/1756-0500-3-257  0.65
2010 Kotz KT, Xiao W, Miller-Graziano C, Qian WJ, Russom A, Warner EA, Moldawer LL, De A, Bankey PE, Petritis BO, Camp DG, Rosenbach AE, Goverman J, Fagan SP, Brownstein BH, ... ... Davis RW, et al. Clinical microfluidics for neutrophil genomics and proteomics. Nature Medicine. 16: 1042-7. PMID 20802500 DOI: 10.1038/Nm.2205  0.326
2010 Farias-Hesson E, Erikson J, Atkins A, Shen P, Davis RW, Scharfe C, Pourmand N. Semi-automated library preparation for high-throughput DNA sequencing platforms. Journal of Biomedicine & Biotechnology. 2010: 617469. PMID 20625503 DOI: 10.1155/2010/617469  0.357
2010 Jensen MA, Fukushima M, Davis RW. DMSO and betaine greatly improve amplification of GC-rich constructs in de novo synthesis. Plos One. 5: e11024. PMID 20552011 DOI: 10.1371/Journal.Pone.0011024  0.376
2010 Oh J, Fung E, Price MN, Dehal PS, Davis RW, Giaever G, Nislow C, Arkin AP, Deutschbauer A. A universal TagModule collection for parallel genetic analysis of microorganisms. Nucleic Acids Research. 38: e146. PMID 20494978 DOI: 10.1093/Nar/Gkq419  0.799
2010 Zhou B, Xu W, Herndon D, Tompkins R, Davis R, Xiao W, Wong WH, Toner M, Warren HS, Schoenfeld DA, Rahme L, McDonald-Smith GP, Hayden D, Mason P, et al. Analysis of factorial time-course microarrays with application to a clinical study of burn injury. Proceedings of the National Academy of Sciences of the United States of America. 107: 9923-8. PMID 20479259 DOI: 10.1073/Pnas.1002757107  0.484
2010 Hyman RW, St Onge RP, Allen EA, Miranda M, Aparicio AM, Fukushima M, Davis RW. Multiplex identification of microbes. Applied and Environmental Microbiology. 76: 3904-10. PMID 20418427 DOI: 10.1128/Aem.02785-09  0.638
2010 Hillenmeyer ME, Ericson E, Davis RW, Nislow C, Koller D, Giaever G. Systematic analysis of genome-wide fitness data in yeast reveals novel gene function and drug action. Genome Biology. 11: R30. PMID 20226027 DOI: 10.1186/Gb-2010-11-3-R30  0.801
2010 Davis R, Sanborn C, Nichols D, Bazett-Jones DM, Dugan EL. The effects of whole body vibration on bone mineral density for a person with a spinal cord injury: a case study. Adapted Physical Activity Quarterly : Apaq. 27: 60-72. PMID 20147770  0.306
2010 Seok J, Kaushal A, Davis RW, Xiao W. Knowledge-based analysis of microarrays for the discovery of transcriptional regulation relationships. Bmc Bioinformatics. 11: S8. PMID 20122245 DOI: 10.1186/1471-2105-11-S1-S8  0.363
2010 Oh J, Fung E, Schlecht U, Davis RW, Giaever G, Onge RPS, Deutschbauer A, Nislow C. Representative results from complementation testing of “core” haploinsufficient strains. Plos Pathogens. DOI: 10.1371/Journal.Ppat.1001140.G004  0.735
2009 Irimia D, Mindrinos M, Russom A, Xiao W, Wilhelmy J, Wang S, Heath JD, Kurn N, Tompkins RG, Davis RW, Toner M. Genome-wide transcriptome analysis of 150 cell samples. Integrative Biology : Quantitative Biosciences From Nano to Macro. 1: 99-107. PMID 20023796 DOI: 10.1039/B814329C  0.342
2009 Wheeler HE, Metter EJ, Tanaka T, Absher D, Higgins J, Zahn JM, Wilhelmy J, Davis RW, Singleton A, Myers RM, Ferrucci L, Kim SK. Sequential use of transcriptional profiling, expression quantitative trait mapping, and gene association implicates MMP20 in human kidney aging. Plos Genetics. 5: e1000685. PMID 19834535 DOI: 10.1371/Journal.Pgen.1000685  0.301
2009 Lang E, Thomas R, Davis R, Colon I, Allaf M, Hanano A, Kagen A, Sethi E, Emery K, Rudman E, Myers L. Risks, advantages, and complications of intercostal vs subcostal approach for percutaneous nephrolithotripsy. Urology. 74: 751-5. PMID 19660797 DOI: 10.1016/J.Urology.2009.04.087  0.331
2009 Seok J, Xiao W, Moldawer LL, Davis RW, Covert MW. A dynamic network of transcription in LPS-treated human subjects. Bmc Systems Biology. 3: 78. PMID 19638230 DOI: 10.1186/1752-0509-3-78  0.324
2009 Schiffman JD, Wang Y, McPherson LA, Welch K, Zhang N, Davis R, Lacayo NJ, Dahl GV, Faham M, Ford JM, Ji HP. Molecular inversion probes reveal patterns of 9p21 deletion and copy number aberrations in childhood leukemia. Cancer Genetics and Cytogenetics. 193: 9-18. PMID 19602459 DOI: 10.1016/J.Cancergencyto.2009.03.005  0.51
2009 Juneau K, Nislow C, Davis RW. Alternative splicing of PTC7 in Saccharomyces cerevisiae determines protein localization. Genetics. 183: 185-94. PMID 19564484 DOI: 10.1534/Genetics.109.105155  0.557
2009 Pierce SE, Davis RW, Nislow C, Giaever G. Chemogenomic approaches to elucidation of gene function and genetic pathways. Methods in Molecular Biology (Clifton, N.J.). 548: 115-43. PMID 19521822 DOI: 10.1007/978-1-59745-540-4_7  0.755
2009 Neklesa TK, Davis RW. A genome-wide screen for regulators of TORC1 in response to amino acid starvation reveals a conserved Npr2/3 complex. Plos Genetics. 5: e1000515. PMID 19521502 DOI: 10.1371/Journal.Pgen.1000515  0.8
2009 Norman PJ, Abi-Rached L, Gendzekhadze K, Hammond JA, Moesta AK, Sharma D, Graef T, McQueen KL, Guethlein LA, Carrington CVF, Chandanayingyong D, Chang YH, Crespí C, Saruhan-Direskeneli G, Hameed K, ... ... Davis RW, et al. Meiotic recombination generates rich diversity in NK cell receptor genes, alleles, and haplotypes Genome Research. 19: 757-769. PMID 19411600 DOI: 10.1101/Gr.085738.108  0.324
2009 Scharfe C, Lu HH, Neuenburg JK, Allen EA, Li GC, Klopstock T, Cowan TM, Enns GM, Davis RW. Mapping gene associations in human mitochondria using clinical disease phenotypes. Plos Computational Biology. 5: e1000374. PMID 19390613 DOI: 10.1371/Journal.Pcbi.1000374  0.343
2009 Zheng J, Moorhead M, Weng L, Siddiqui F, Carlton VE, Ireland JS, Lee L, Peterson J, Wilkins J, Lin S, Kan Z, Seshagiri S, Davis RW, Faham M. High-throughput, high-accuracy array-based resequencing. Proceedings of the National Academy of Sciences of the United States of America. 106: 6712-7. PMID 19342489 DOI: 10.1073/Pnas.0901902106  0.351
2008 Osterfeld SJ, Yu H, Gaster RS, Caramuta S, Xu L, Han SJ, Hall DA, Wilson RJ, Sun S, White RL, Davis RW, Pourmand N, Wang SX. Multiplex protein assays based on real-time magnetic nanotag sensing. Proceedings of the National Academy of Sciences of the United States of America. 105: 20637-40. PMID 19074273 DOI: 10.1073/Pnas.0810822105  0.448
2008 Neklesa TK, Davis RW. Superoxide anions regulate TORC1 and its ability to bind Fpr1:rapamycin complex. Proceedings of the National Academy of Sciences of the United States of America. 105: 15166-71. PMID 18812505 DOI: 10.1073/Pnas.0807712105  0.773
2008 Sinha H, David L, Pascon RC, Clauder-Münster S, Krishnakumar S, Nguyen M, Shi G, Dean J, Davis RW, Oefner PJ, McCusker JH, Steinmetz LM. Sequential elimination of major-effect contributors identifies additional quantitative trait loci conditioning high-temperature growth in yeast. Genetics. 180: 1661-70. PMID 18780730 DOI: 10.1534/Genetics.108.092932  0.566
2008 Null B, Liu CW, Hedehus M, Conolly S, Davis RW. High-resolution, in vivo magnetic resonance imaging of Drosophila at 18.8 Tesla. Plos One. 3: e2817. PMID 18665264 DOI: 10.1371/Journal.Pone.0002817  0.766
2008 Doostzadeh J, Shokralla S, Absalan F, Jalili R, Mohandessi S, Langston JW, Davis RW, Ronaghi M, Gharizadeh B. High throughput automated allele frequency estimation by pyrosequencing. Plos One. 3: e2693. PMID 18628978 DOI: 10.1371/Journal.Pone.0002693  0.313
2008 Hoon S, Smith AM, Wallace IM, Suresh S, Miranda M, Fung E, Proctor M, Shokat KM, Zhang C, Davis RW, Giaever G, St Onge RP, StOnge RP, Nislow C. An integrated platform of genomic assays reveals small-molecule bioactivities. Nature Chemical Biology. 4: 498-506. PMID 18622389 DOI: 10.1038/Nchembio.100  0.791
2008 Dean EJ, Davis JC, Davis RW, Petrov DA. Pervasive and persistent redundancy among duplicated genes in yeast. Plos Genetics. 4: e1000113. PMID 18604285 DOI: 10.1371/Journal.Pgen.1000113  0.675
2008 Krishnakumar S, Zheng J, Wilhelmy J, Faham M, Mindrinos M, Davis R. A comprehensive assay for targeted multiplex amplification of human DNA sequences. Proceedings of the National Academy of Sciences of the United States of America. 105: 9296-301. PMID 18599465 DOI: 10.1073/Pnas.0803240105  0.514
2008 Hillenmeyer ME, Fung E, Wildenhain J, Pierce SE, Hoon S, Lee W, Proctor M, St Onge RP, Tyers M, Koller D, Altman RB, Davis RW, Nislow C, Giaever G. The chemical genomic portrait of yeast: uncovering a phenotype for all genes. Science (New York, N.Y.). 320: 362-5. PMID 18420932 DOI: 10.1126/Science.1150021  0.811
2008 Chu AM, Davis RW. High-throughput creation of a whole-genome collection of yeast knockout strains. Methods in Molecular Biology (Clifton, N.J.). 416: 205-20. PMID 18392970 DOI: 10.1007/978-1-59745-321-9_14  0.423
2008 Russom A, Sethu P, Irimia D, Mindrinos MN, Calvano SE, Garcia I, Finnerty C, Tannahill C, Abouhamze A, Wilhelmy J, López MC, Baker HV, Herndon DN, Lowry SF, Maier RV, ... Davis RW, et al. Microfluidic leukocyte isolation for gene expression analysis in critically ill hospitalized patients. Clinical Chemistry. 54: 891-900. PMID 18375483 DOI: 10.1373/Clinchem.2007.099150  0.328
2008 Li L, Ying L, Naesens M, Xiao W, Sigdel T, Hsieh S, Martin J, Chen R, Liu K, Mindrinos M, Davis R, Sarwal M. Interference of globin genes with biomarker discovery for allograft rejection in peripheral blood samples. Physiological Genomics. 32: 190-7. PMID 17971501 DOI: 10.1152/Physiolgenomics.00216.2007  0.313
2008 Esfandyarpour H, Pease RFW, Davis RW. Picocalorimetric method for DNA sequencinga) Journal of Vacuum Science & Technology B. 26: 661-665. DOI: 10.1116/1.2897322  0.308
2008 Hoon S, Smith AM, Wallace IM, Suresh S, Miranda M, Fung E, Proctor M, Shokat KM, Zhang C, Davis RW, Giaever G, St Onge RP, Nislow C. An integrated platform of genomic assays reveals small-molecule bioactivities (Nature Chemical Biology (2008) 4, (498-506)) Nature Chemical Biology. 4: 632. DOI: 10.1038/Nchembio1008-632  0.754
2007 Pierce SE, Davis RW, Nislow C, Giaever G. Genome-wide analysis of barcoded Saccharomyces cerevisiae gene-deletion mutants in pooled cultures. Nature Protocols. 2: 2958-2974. PMID 18007632 DOI: 10.1038/Nprot.2007.427  0.747
2007 McClellan AJ, Xia Y, Deutschbauer AM, Davis RW, Gerstein M, Frydman J. Diverse cellular functions of the Hsp90 molecular chaperone uncovered using systems approaches. Cell. 131: 121-35. PMID 17923092 DOI: 10.1016/J.Cell.2007.07.036  0.585
2007 Akhras MS, Unemo M, Thiyagarajan S, Nyrén P, Davis RW, Fire AZ, Pourmand N. Connector inversion probe technology: a powerful one-primer multiplex DNA amplification system for numerous scientific applications. Plos One. 2: e915. PMID 17878950 DOI: 10.1371/Journal.Pone.0000915  0.317
2007 Lee W, Tillo D, Bray N, Morse RH, Davis RW, Hughes TR, Nislow C. A high-resolution atlas of nucleosome occupancy in yeast. Nature Genetics. 39: 1235-44. PMID 17873876 DOI: 10.1038/Ng2117  0.595
2007 Wei W, McCusker JH, Hyman RW, Jones T, Ning Y, Cao Z, Gu Z, Bruno D, Miranda M, Nguyen M, Wilhelmy J, Komp C, Tamse R, Wang X, Jia P, ... ... Davis RW, et al. Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789. Proceedings of the National Academy of Sciences of the United States of America. 104: 12825-30. PMID 17652520 DOI: 10.1073/Pnas.0701291104  0.794
2007 Dahl F, Stenberg J, Fredriksson S, Welch K, Zhang M, Nilsson M, Bicknell D, Bodmer WF, Davis RW, Ji H. Multigene amplification and massively parallel sequencing for cancer mutation discovery. Proceedings of the National Academy of Sciences of the United States of America. 104: 9387-92. PMID 17517648 DOI: 10.1073/Pnas.0702165104  0.384
2007 Pourmand N, Caramuta S, Villablanca A, Mori S, Karhanek M, Wang SX, Davis RW. Branch migration displacement assay with automated heuristic analysis for discrete DNA length measurement using DNA microarrays. Proceedings of the National Academy of Sciences of the United States of America. 104: 6146-51. PMID 17389407 DOI: 10.1073/Pnas.0700921104  0.344
2007 Fredriksson S, Banér J, Dahl F, Chu A, Ji H, Welch K, Davis RW. Multiplex amplification of all coding sequences within 10 cancer genes by Gene-Collector. Nucleic Acids Research. 35. PMID 17317684 DOI: 10.1093/Nar/Gkm078  0.398
2007 Gassner NC, Tamble CM, Bock JE, Cotton N, White KN, Tenney K, St. Onge RP, Proctor MJ, Giaever G, Nislow C, Davis RW, Crews P, Holman TR, Lokey RS. Accelerating the discovery of biologically active small molecules using a high-throughput yeast halo assay Journal of Natural Products. 70: 383-390. PMID 17291044 DOI: 10.1021/Np060555T  0.676
2007 Juneau K, Palm C, Miranda M, Davis RW. High-density yeast-tiling array reveals previously undiscovered introns and extensive regulation of meiotic splicing Proceedings of the National Academy of Sciences of the United States of America. 104: 1522-1527. PMID 17244705 DOI: 10.1073/Pnas.0610354104  0.446
2007 St Onge RP, Mani R, Oh J, Proctor M, Fung E, Davis RW, Nislow C, Roth FP, Giaever G. Systematic pathway analysis using high-resolution fitness profiling of combinatorial gene deletions. Nature Genetics. 39: 199-206. PMID 17206143 DOI: 10.1038/Ng1948  0.721
2007 Doostzadeh J, Davis RW, Giaever GN, Nislow C, Langston JW. Chemical genomic profiling for identifying intracellular targets of toxicants producing Parkinson's disease. Toxicological Sciences : An Official Journal of the Society of Toxicology. 95: 182-7. PMID 17043098 DOI: 10.1093/Toxsci/Kfl131  0.735
2007 Ji HP, Welch KM, Wang Y, Faham M, Akasaka T, Czerwinski D, Davis RW, Levy R. Gene-Specific Delineation of Copy Number Aberrations in Follicular Lymphoma with Molecular Inversion Probes. Blood. 110: 2603-2603. DOI: 10.1182/Blood.V110.11.2603.2603  0.425
2007 Schiffman JD, Welch K, Davis R, Lacayo NJ, Dahl GV, Wang Y, Faham M, Ford JM, Ji HP. Molecular Inversion Probes (MIPs) Identify Novel Areas of Allelic Imbalance in Childhood Leukemia. Blood. 110: 1438-1438. DOI: 10.1182/Blood.V110.11.1438.1438  0.359
2006 Thiyagarajan S, Karhanek M, Akhras M, Davis RW, Pourmand N. PathogenMIPer: a tool for the design of molecular inversion probes to detect multiple pathogens. Bmc Bioinformatics. 7: 500. PMID 17105657 DOI: 10.1186/1471-2105-7-500  0.321
2006 Laudanski K, Miller-Graziano C, Xiao W, Mindrinos MN, Richards DR, De A, Moldawer LL, Maier RV, Bankey P, Baker HV, Brownstein BH, Cobb JP, Calvano SE, Davis RW, Tompkins RG. Cell-specific expression and pathway analyses reveal alterations in trauma-related human T cell and monocyte pathways. Proceedings of the National Academy of Sciences of the United States of America. 103: 15564-9. PMID 17032758 DOI: 10.1073/Pnas.0607028103  0.694
2006 Ji H, Davis RW. Data quality in genomics and microarrays Nature Biotechnology. 24: 1112-1113. PMID 16964224 DOI: 10.1038/Nbt0906-1112  0.334
2006 Ji H, Kumm J, Zhang M, Farnam K, Salari K, Faham M, Ford JM, Davis RW. Molecular inversion probe analysis of gene copy alterations reveals distinct categories of colorectal carcinoma. Cancer Research. 66: 7910-9. PMID 16912164 DOI: 10.1158/0008-5472.Can-06-0595  0.357
2006 Walton SP, Mindrinos MN, Davis RW. Analysis of hybridization on the molecular barcode GeneChip microarray. Biochemical and Biophysical Research Communications. 348: 689-696. PMID 16893517 DOI: 10.1016/J.Bbrc.2006.07.108  0.333
2006 Pierce SE, Fung EL, Jaramillo DF, Chu AM, Davis RW, Nislow C, Giaever G. A unique and universal molecular barcode array. Nature Methods. 3: 601-3. PMID 16862133 DOI: 10.1038/Nmeth905  0.693
2006 Juneau K, Miranda M, Hillenmeyer ME, Nislow C, Davis RW. Introns regulate RNA and protein abundance in yeast. Genetics. 174: 511-8. PMID 16816425 DOI: 10.1534/Genetics.106.058560  0.813
2006 David L, Huber W, Granovskaia M, Toedling J, Palm CJ, Bofkin L, Jones T, Davis RW, Steinmetz LM. A high-resolution map of transcription in the yeast genome Proceedings of the National Academy of Sciences of the United States of America. 103: 5320-5325. PMID 16569694 DOI: 10.1073/Pnas.0601091103  0.617
2006 Kastenmayer JP, Ni L, Chu A, Kitchen LE, Au WC, Yang H, Carter CD, Wheeler D, Davis RW, Boeke JD, Snyder MA, Basrai MA. Functional genomics of genes with small open reading frames (sORFs) in S. cerevisiae. Genome Research. 16: 365-73. PMID 16510898 DOI: 10.1101/Gr.4355406  0.625
2006 Schiffman JD, Ji H, Welch KM, Davis R, Van Houten Dahl G, Lacayo NJ, Ford JM. Novel Allele Quantification Method To Classify Childhood Leukemia. Blood. 108: 2273-2273. DOI: 10.1182/Blood.V108.11.2273.2273  0.422
2005 Wang Y, Moorhead M, Karlin-Neumann G, Falkowski M, Chen C, Siddiqui F, Davis RW, Willis TD, Faham M. Allele quantification using molecular inversion probes (MIP). Nucleic Acids Research. 33: e183. PMID 16314297 DOI: 10.1093/Nar/Gni177  0.305
2005 Deutschbauer AM, Davis RW. Quantitative trait loci mapped to single-nucleotide resolution in yeast. Nature Genetics. 37: 1333-40. PMID 16273108 DOI: 10.1038/Ng1674  0.597
2005 Kemp JT, Davis RW, White RL, Wang SX, Webb CD. A novel method for STR-based DNA profiling using microarrays. Journal of Forensic Sciences. 50: 1109-13. PMID 16225215 DOI: 10.1520/Jfs2004429  0.509
2005 Faham M, Zheng J, Moorhead M, Fakhrai-Rad H, Namsaraev E, Wong K, Wang Z, Chow SG, Lee L, Suyenaga K, Reichert J, Boudreau A, Eberle J, Bruckner C, Jain M, ... ... Davis RW, et al. Multiplexed variation scanning for 1,000 amplicons in hundreds of patients using mismatch repair detection (MRD) on tag arrays. Proceedings of the National Academy of Sciences of the United States of America. 102: 14717-22. PMID 16203980 DOI: 10.1073/Pnas.0506677102  0.346
2005 Storey JD, Xiao W, Leek JT, Tompkins RG, Davis RW. Significance analysis of time course microarray experiments. Proceedings of the National Academy of Sciences of the United States of America. 102: 12837-42. PMID 16141318 DOI: 10.1073/Pnas.0504609102  0.375
2005 Calvano SE, Xiao W, Richards DR, Felciano RM, Baker HV, Cho RJ, Chen RO, Brownstein BH, Cobb JP, Tschoeke SK, Miller-Graziano C, Moldawer LL, Mindrinos MN, Davis RW, Tompkins RG, et al. A network-based analysis of systemic inflammation in humans. Nature. 437: 1032-7. PMID 16136080 DOI: 10.1038/Nature03985  0.785
2005 Lee W, St Onge RP, Proctor M, Flaherty P, Jordan MI, Arkin AP, Davis RW, Nislow C, Giaever G. Genome-wide requirements for resistance to functionally distinct DNA-damaging agents. Plos Genetics. 1: e24. PMID 16121259 DOI: 10.1371/Journal.Pgen.0010024  0.722
2005 Hyman RW, Fukushima M, Diamond L, Kumm J, Giudice LC, Davis RW. Microbes on the human vaginal epithelium. Proceedings of the National Academy of Sciences of the United States of America. 102: 7952-7. PMID 15911771 DOI: 10.1073/Pnas.0503236102  0.653
2005 Cobb JP, Mindrinos MN, Miller-Graziano C, Calvano SE, Baker HV, Xiao W, Laudanski K, Brownstein BH, Elson CM, Hayden DL, Herndon DN, Lowry SF, Maier RV, Schoenfeld DA, Moldawer LL, ... Davis RW, ... ... Davis RW, et al. Application of genome-wide expression analysis to human health and disease. Proceedings of the National Academy of Sciences of the United States of America. 102: 4801-6. PMID 15781863 DOI: 10.1073/Pnas.0409768102  0.359
2005 Deutschbauer AM, Jaramillo DF, Proctor M, Kumm J, Hillenmeyer ME, Davis RW, Nislow C, Giaever G. Mechanisms of haploinsufficiency revealed by genome-wide profiling in yeast. Genetics. 169: 1915-25. PMID 15716499 DOI: 10.1534/Genetics.104.036871  0.812
2005 Apidianakis Y, Mindrinos MN, Xiao W, Lau GW, Baldini RL, Davis RW, Rahme LG. Profiling early infection responses: Pseudomonas aeruginosa eludes host defenses by suppressing antimicrobial peptide gene expression. Proceedings of the National Academy of Sciences of the United States of America. 102: 2573-8. PMID 15695583 DOI: 10.1073/Pnas.0409588102  0.333
2005 Loftus BJ, Fung E, Roncaglia P, Rowley D, Amedeo P, Bruno D, Vamathevan J, Miranda M, Anderson IJ, Fraser JA, Allen JE, Bosdet IE, Brent MR, Chiu R, Doering TL, ... ... Davis RW, et al. The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformans. Science (New York, N.Y.). 307: 1321-4. PMID 15653466 DOI: 10.1126/Science.1103773  0.698
2005 Gu Z, David L, Petrov D, Jones T, Davis RW, Steinmetz LM. Elevated evolutionary rates in the laboratory strain of Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America. 102: 1092-7. PMID 15647350 DOI: 10.1073/Pnas.0409159102  0.575
2005 Calvano SE, Xiao W, Richards DR, Felciano RM, Baker HV, Cho RJ, Chen RO, Brownstein BH, Cobb JP, Tschoeke SK, Miller-Graziano C, Moldawer LL, Mindrinos MN, Davis RW, Tompkins RG, et al. Erratum: A network-based analysis of systemic inflammation in humans (Nature (2005) 437 (1032-1037) DOI: 10.1038/nature03985) Nature. 438. DOI: 10.1038/Nature04362  0.737
2004 Lan CY, Rodarte G, Murillo LA, Jones T, Davis RW, Dungan J, Newport G, Agabian N. Regulatory networks affected by iron availability in Candida albicans. Molecular Microbiology. 53: 1451-69. PMID 15387822 DOI: 10.1111/J.1365-2958.2004.04214.X  0.321
2004 Eason RG, Pourmand N, Tongprasit W, Herman ZS, Anthony K, Jejelowo O, Davis RW, Stolc V. Characterization of synthetic DNA bar codes in Saccharomyces cerevisiae gene-deletion strains. Proceedings of the National Academy of Sciences of the United States of America. 101: 11046-51. PMID 15258289 DOI: 10.1073/Pnas.0403672101  0.422
2004 Fakhrai-Rad H, Zheng J, Willis TD, Wong K, Suyenaga K, Moorhead M, Eberle J, Thorstenson YR, Jones T, Davis RW, Namsaraev E, Faham M. SNP discovery in pooled samples with mismatch repair detection. Genome Research. 14: 1404-12. PMID 15231755 DOI: 10.1101/Gr.2373904  0.357
2004 Petronczki M, Chwalla B, Siomos MF, Yokobayashi S, Helmhart W, Deutschbauer AM, Davis RW, Watanabe Y, Nasmyth K. Sister-chromatid cohesion mediated by the alternative RF-CCtf18/Dcc1/Ctf8, the helicase Chl1 and the polymerase-alpha-associated protein Ctf4 is essential for chromatid disjunction during meiosis II. Journal of Cell Science. 117: 3547-59. PMID 15226378 DOI: 10.1242/Jcs.01231  0.602
2004 Prokisch H, Scharfe C, Camp DG, Xiao W, David L, Andreoli C, Monroe ME, Moore RJ, Gritsenko MA, Kozany C, Hixson KK, Mottaz HM, Zischka H, Ueffing M, Herman ZS, ... Davis RW, et al. Integrative analysis of the mitochondrial proteome in yeast. Plos Biology. 2: e160. PMID 15208715 DOI: 10.1371/Journal.Pbio.0020160  0.573
2004 Feezor RJ, Baker HV, Xiao W, Lee WA, Huber TS, Mindrinos M, Kim RA, Ruiz-Taylor L, Moldawer LL, Davis RW, Seeger JM. Genomic and proteomic determinants of outcome in patients undergoing thoracoabdominal aortic aneurysm repair. Journal of Immunology (Baltimore, Md. : 1950). 172: 7103-9. PMID 15153533 DOI: 10.4049/Jimmunol.172.11.7103  0.307
2004 Jones T, Federspiel NA, Chibana H, Dungan J, Kalman S, Magee BB, Newport G, Thorstenson YR, Agabian N, Magee PT, Davis RW, Scherer S. The diploid genome sequence of Candida albicans. Proceedings of the National Academy of Sciences of the United States of America. 101: 7329-34. PMID 15123810 DOI: 10.1073/Pnas.0401648101  0.356
2004 Rosenthal J, Rodewald L, McCauley M, Berman S, Irigoyen M, Sawyer M, Yusuf H, Davis R, Kalton G. Immunization coverage levels among 19- to 35-month-old children in 4 diverse, medically underserved areas of the United States. Pediatrics. 113: e296-302. PMID 15060256  0.314
2004 Steinmetz LM, Davis RW. Maximizing the potential of functional genomics. Nature Reviews. Genetics. 5: 190-201. PMID 14970821 DOI: 10.1038/Nrg1293  0.568
2004 Wang QT, Piotrowska K, Ciemerych MA, Milenkovic L, Scott MP, Davis RW, Zernicka-Goetz M. A genome-wide study of gene activity reveals developmental signaling pathways in the preimplantation mouse embryo. Developmental Cell. 6: 133-44. PMID 14723853 DOI: 10.1016/S1534-5807(03)00404-0  0.31
2004 Giaever G, Flaherty P, Kumm J, Proctor M, Nislow C, Jaramillo DF, Chu AM, Jordan MI, Arkin AP, Davis RW. Chemogenomic profiling: identifying the functional interactions of small molecules in yeast. Proceedings of the National Academy of Sciences of the United States of America. 101: 793-8. PMID 14718668 DOI: 10.1073/Pnas.0307490100  0.711
2004 Wiederkehr C, Basavaraj R, Sarrauste de Menthière C, Hermida L, Koch R, Schlecht U, Amon A, Brachat S, Breitenbach M, Briza P, Caburet S, Cherry M, Davis R, Deutschbauer A, Dickinson HG, et al. GermOnline, a cross-species community knowledgebase on germ cell differentiation. Nucleic Acids Research. 32: D560-7. PMID 14681481 DOI: 10.1093/Nar/Gkh055  0.61
2003 Yamada K, Lim J, Dale JM, Chen H, Shinn P, Palm CJ, Southwick AM, Wu HC, Kim C, Nguyen M, Pham P, Cheuk R, Karlin-Newmann G, Liu SX, Lam B, ... ... Davis RW, et al. Empirical analysis of transcriptional activity in the Arabidopsis genome. Science (New York, N.Y.). 302: 842-6. PMID 14593172 DOI: 10.1126/Science.1088305  0.814
2003 Jain M, Thorstenson YR, Faulkner DM, Pourmand N, Jones T, Au M, Oefner PJ, White KP, Davis RW. Genotyping African haplotypes in ATM using a co-spotted single-base extension assay. Human Mutation. 22: 214-21. PMID 12938086 DOI: 10.1002/Humu.10250  0.313
2003 Hardenbol P, Banér J, Jain M, Nilsson M, Namsaraev EA, Karlin-Neumann GA, Fakhrai-Rad H, Ronaghi M, Willis TD, Landegren U, Davis RW. Multiplexed genotyping with sequence-tagged molecular inversion probes. Nature Biotechnology. 21: 673-8. PMID 12730666 DOI: 10.1038/Nbt821  0.322
2003 Gu Z, Steinmetz LM, Gu X, Scharfe C, Davis RW, Li WH. Role of duplicate genes in genetic robustness against null mutations. Nature. 421: 63-6. PMID 12511954 DOI: 10.1038/Nature01198  0.622
2002 Hodge SR, Davis R, Woodard R, Sherrill C. Comparison of Practicum Types in Changing Preservice Teachers' Attitudes and Perceived Competence. Adapted Physical Activity Quarterly : Apaq. 19: 155-171. PMID 28195772 DOI: 10.1123/Apaq.19.2.155  0.319
2002 Deutschbauer AM, Williams RM, Chu AM, Davis RW. Parallel phenotypic analysis of sporulation and postgermination growth in Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America. 99: 15530-5. PMID 12432101 DOI: 10.1073/Pnas.202604399  0.659
2002 Wang QT, Xiao W, Mindrinos M, Davis RW. Yeast tRNA as carrier in the isolation of microscale RNA for global amplification and expression profiling. Biotechniques. 33: 788-796. PMID 12398187 DOI: 10.2144/02334St02  0.311
2002 Lan CY, Newport G, Murillo LA, Jones T, Scherer S, Davis RW, Agabian N. Metabolic specialization associated with phenotypic switching in Candidaalbicans. Proceedings of the National Academy of Sciences of the United States of America. 99: 14907-12. PMID 12397174 DOI: 10.1073/Pnas.232566499  0.327
2002 Williams RM, Primig M, Washburn BK, Winzeler EA, Bellis M, Sarrauste de Menthiere C, Davis RW, Esposito RE. The Ume6 regulon coordinates metabolic and meiotic gene expression in yeast. Proceedings of the National Academy of Sciences of the United States of America. 99: 13431-6. PMID 12370439 DOI: 10.1073/Pnas.202495299  0.592
2002 Hyman RW, Fung E, Conway A, Kurdi O, Mao J, Miranda M, Nakao B, Rowley D, Tamaki T, Wang F, Davis RW. Sequence of Plasmodium falciparum chromosome 12. Nature. 419: 534-7. PMID 12368869 DOI: 10.1038/Nature01102  0.65
2002 Gardner MJ, Hall N, Fung E, White O, Berriman M, Hyman RW, Carlton JM, Pain A, Nelson KE, Bowman S, Paulsen IT, James K, Eisen JA, Rutherford K, Salzberg SL, ... ... Davis RW, et al. Genome sequence of the human malaria parasite Plasmodium falciparum. Nature. 419: 498-511. PMID 12368864 DOI: 10.1038/Nature01097  0.672
2002 Arbeitman MN, Furlong EE, Imam F, Johnson E, Null BH, Baker BS, Krasnow MA, Scott MP, Davis RW, White KP. Gene expression during the life cycle of Drosophila melanogaster. Science (New York, N.Y.). 297: 2270-5. PMID 12351791 DOI: 10.1126/Science.1072152  0.8
2002 Giaever G, Chu AM, Ni L, Connelly C, Riles L, Véronneau S, Dow S, Lucau-Danila A, Anderson K, André B, Arkin AP, Astromoff A, El-Bakkoury M, Bangham R, Benito R, ... ... Davis RW, et al. Functional profiling of the Saccharomyces cerevisiae genome. Nature. 418: 387-91. PMID 12140549 DOI: 10.1038/Nature00935  0.828
2002 Steinmetz LM, Scharfe C, Deutschbauer AM, Mokranjac D, Herman ZS, Jones T, Chu AM, Giaever G, Prokisch H, Oefner PJ, Davis RW. Systematic screen for human disease genes in yeast. Nature Genetics. 31: 400-4. PMID 12134146 DOI: 10.1038/Ng929  0.78
2002 Birrell GW, Brown JA, Wu HI, Giaever G, Chu AM, Davis RW, Brown JM. Transcriptional response of Saccharomyces cerevisiae to DNA-damaging agents does not identify the genes that protect against these agents. Proceedings of the National Academy of Sciences of the United States of America. 99: 8778-83. PMID 12077312 DOI: 10.1073/Pnas.132275199  0.621
2002 Steinmetz LM, Sinha H, Richards DR, Spiegelman JI, Oefner PJ, McCusker JH, Davis RW. Dissecting the architecture of a quantitative trait locus in yeast. Nature. 416: 326-30. PMID 11907579 DOI: 10.1038/416326A  0.763
2002 Gunn TM, Azarani A, Kim PH, Hyman RW, Davis RW, Barsh GS. Identification and preliminary characterization of mouse Adam33. Bmc Genetics. 3: 2. PMID 11897009 DOI: 10.1186/1471-2156-3-2  0.676
2001 Birrell GW, Giaever G, Chu AM, Davis RW, Brown JM. A genome-wide screen in Saccharomyces cerevisiae for genes affecting UV radiation sensitivity. Proceedings of the National Academy of Sciences of the United States of America. 98: 12608-13. PMID 11606770 DOI: 10.1073/Pnas.231366398  0.664
2001 Raghuraman MK, Winzeler EA, Collingwood D, Hunt S, Wodicka L, Conway A, Lockhart DJ, Davis RW, Brewer BJ, Fangman WL. Replication dynamics of the yeast genome. Science (New York, N.Y.). 294: 115-21. PMID 11588253 DOI: 10.1126/Science.294.5540.115  0.571
2001 Barnett MJ, Fisher RF, Jones T, Komp C, Abola AP, Barloy-Hubler F, Bowser L, Capela D, Galibert F, Gouzy J, Gurjal M, Hong A, Huizar L, Hyman RW, Kahn D, ... ... Davis RW, et al. Nucleotide sequence and predicted functions of the entire Sinorhizobium meliloti pSymA megaplasmid. Proceedings of the National Academy of Sciences of the United States of America. 98: 9883-8. PMID 11481432 DOI: 10.1073/Pnas.161294798  0.665
2001 Galibert F, Finan TM, Long SR, Puhler A, Abola P, Ampe F, Barloy-Hubler F, Barnett MJ, Becker A, Boistard P, Bothe G, Boutry M, Bowser L, Buhrmester J, Cadieu E, ... ... Davis RW, et al. The composite genome of the legume symbiont Sinorhizobium meliloti. Science (New York, N.Y.). 293: 668-72. PMID 11474104 DOI: 10.1126/Science.1060966  0.661
2001 Thorstenson YR, Shen P, Tusher VG, Wayne TL, Davis RW, Chu G, Oefner PJ. Global analysis of ATM polymorphism reveals significant functional constraint. American Journal of Human Genetics. 69: 396-412. PMID 11443540 DOI: 10.1086/321296  0.393
2001 Tzung KW, Williams RM, Scherer S, Federspiel N, Jones T, Hansen N, Bivolarevic V, Huizar L, Komp C, Surzycki R, Tamse R, Davis RW, Agabian N. Genomic evidence for a complete sexual cycle in Candida albicans. Proceedings of the National Academy of Sciences of the United States of America. 98: 3249-53. PMID 11248064 DOI: 10.1073/Pnas.061628798  0.384
2001 Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, FitzHugh W, Funke R, Gage D, Harris K, Heaford A, Howland J, ... ... Davis RW, et al. Initial sequencing and analysis of the human genome. Nature. 409: 860-921. PMID 11237011 DOI: 10.1038/35057062  0.334
2001 Cho RJ, Huang M, Campbell MJ, Dong H, Steinmetz L, Sapinoso L, Hampton G, Elledge SJ, Davis RW, Lockhart DJ. Transcriptional regulation and function during the human cell cycle. Nature Genetics. 27: 48-54. PMID 11137997 DOI: 10.1038/83751  0.805
2001 Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, Fitzhugh W, Funke R, Gage D, Harris K, Heaford A, Howland J, ... ... Davis RW, et al. Erratum: Initial sequencing and analysis of the human genome: International Human Genome Sequencing Consortium (Nature (2001) 409 (860-921)) Nature. 412: 565-566. DOI: 10.1038/35087627  0.327
2000 Steinmetz LM, Davis RW. High-density arrays and insights into genome function. Biotechnology & Genetic Engineering Reviews. 17: 109-46. PMID 11255664 DOI: 10.1080/02648725.2000.10647990  0.547
2000 Theologis A, Ecker JR, Palm CJ, Federspiel NA, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman CL, Brooks SY, Buehler E, Chan A, Chao Q, Chen H, ... ... Davis RW, et al. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Nature. 408: 816-20. PMID 11130712 DOI: 10.1038/35048500  0.633
2000 Drenkard E, Richter BG, Rozen S, Stutius LM, Angell NA, Mindrinos M, Cho RJ, Oefner PJ, Davis RW, Ausubel FM. A simple procedure for the analysis of single nucleotide polymorphisms facilitates map-based cloning in Arabidopsis. Plant Physiology. 124: 1483-92. PMID 11115864 DOI: 10.1104/Pp.124.4.1483  0.62
2000 Primig M, Williams RM, Winzeler EA, Tevzadze GG, Conway AR, Hwang SY, Davis RW, Esposito RE. The core meiotic transcriptome in budding yeasts. Nature Genetics. 26: 415-23. PMID 11101837 DOI: 10.1038/82539  0.614
2000 Seoighe C, Federspiel N, Jones T, Hansen N, Bivolarovic V, Surzycki R, Tamse R, Komp C, Huizar L, Davis RW, Scherer S, Tait E, Shaw DJ, Harris D, Murphy L, et al. Prevalence of small inversions in yeast gene order evolution. Proceedings of the National Academy of Sciences of the United States of America. 97: 14433-7. PMID 11087826 DOI: 10.1073/Pnas.240462997  0.41
2000 Winzeler EA, Liang H, Shoemaker DD, Davis RW. Functional analysis of the yeast genome by precise deletion and parallel phenotypic characterization. Novartis Foundation Symposium. 229: 105-9; discussion 10. PMID 11084935 DOI: 10.1002/047084664X.Ch14  0.58
2000 Shen P, Wang F, Underhill PA, Franco C, Yang WH, Roxas A, Sung R, Lin AA, Hyman RW, Vollrath D, Davis RW, Cavalli-Sforza LL, Oefner PJ. Population genetic implications from sequence variation in four Y chromosome genes. Proceedings of the National Academy of Sciences of the United States of America. 97: 7354-9. PMID 10861003 DOI: 10.1073/Pnas.97.13.7354  0.671
2000 Aharoni A, Keizer LC, Bouwmeester HJ, Sun Z, Alvarez-Huerta M, Verhoeven HA, Blaas J, van Houwelingen AM, De Vos RC, van der Voet H, Jansen RC, Guis M, Mol J, Davis RW, Schena M, et al. Identification of the SAAT gene involved in strawberry flavor biogenesis by use of DNA microarrays. The Plant Cell. 12: 647-62. PMID 10810141 DOI: 10.1105/Tpc.12.5.647  0.344
2000 Palm CJ, Federspiel NA, Davis RW. DAtA: Database of Arabidopsis thaliana Annotation Nucleic Acids Research. 28: 102-103. PMID 10592193 DOI: 10.1093/Nar/28.1.102  0.333
2000 Karlyshev AV, Oyston PC, Williams K, Titball RW, Davis R, Winzeler EA, Wren BW. Development of high-density DNA array based signature-tagged mutagenesis and its application for the discovery of novel Y. pseudotuberculosis virulence-associated genes Biochemical Society Transactions. 28: A232-A232. DOI: 10.1042/Bst028A232  0.581
1999 Linde JJMt, Liang H, Davis RW, Steensma HY, Dijken JPv, Pronk JT. Genome-wide transcriptional analysis of aerobic and anaerobic chemostat cultures of Saccharomyces cerevisiae. Journal of Bacteriology. 181: 7409-7413. PMID 10601195 DOI: 10.1128/Jb.181.24.7409-7413.1999  0.376
1999 Cho RJ, Mindrinos M, Richards DR, Sapolsky RJ, Anderson M, Drenkard E, Dewdney J, Reuber TL, Stammers M, Federspiel N, Theologis A, Yang WH, Hubbell E, Au M, Chung EY, ... ... Davis RW, et al. Genome-wide mapping with biallelic markers in Arabidopsis thaliana. Nature Genetics. 23: 203-7. PMID 10508518 DOI: 10.1038/13833  0.772
1999 Winzeler EA, Lee B, McCusker JH, Davis RW. Whole genome genetic-typing in yeast using high-density oligonucleotide arrays. Parasitology. 118: S73-80. PMID 10466139 DOI: 10.1017/S0031182099004047  0.587
1999 Winzeler EA, Shoemaker DD, Astromoff A, Liang H, Anderson K, Andre B, Bangham R, Benito R, Boeke JD, Bussey H, Chu AM, Connelly C, Davis K, Dietrich F, Dow SW, ... ... Davis RW, et al. Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. Science (New York, N.Y.). 285: 901-6. PMID 10436161 DOI: 10.1126/Science.285.5429.901  0.811
1999 Winzeler EA, Schena M, Davis RW. Fluorescence-based expression monitoring using microarrays. Methods in Enzymology. 306: 3-18. PMID 10432445 DOI: 10.1016/S0076-6879(99)06003-6  0.579
1999 Itoh T, Okayama T, Hashimoto H, Takeda J, Davis RW, Mori H, Gojobori T. A low rate of nucleotide changes in Escherichia coli K-12 estimated from a comparison of the genome sequences between two different substrains. Febs Letters. 450: 72-6. PMID 10350060 DOI: 10.1016/S0014-5793(99)00481-0  0.31
1999 Kalman S, Mitchell W, Marathe R, Lammel C, Fan J, Hyman RW, Olinger L, Grimwood J, Davis RW, Stephens RS. Comparative genomes of Chlamydia pneumoniae and C. trachomatis. Nature Genetics. 21: 385-9. PMID 10192388 DOI: 10.1038/7716  0.632
1999 Jin L, Underhill PA, Doctor V, Davis RW, Shen P, Cavalli-Sforza LL, Oefner PJ. Distribution of haplotypes from a chromosome 21 region distinguishes multiple prehistoric human migrations. Proceedings of the National Academy of Sciences of the United States of America. 96: 3796-800. PMID 10097117 DOI: 10.1073/Pnas.96.7.3796  0.315
1999 Gunn TM, Miller KA, He L, Hyman RW, Davis RW, Azarani A, Schlossman SF, Duke-Cohan JS, Barsh GS. The mouse mahogany locus encodes a transmembrane form of human attractin. Nature. 398: 152-6. PMID 10086356 DOI: 10.1038/18217  0.644
1999 Giaever G, Shoemaker DD, Jones TW, Liang H, Winzeler EA, Astromoff A, Davis RW. Genomic profiling of drug sensitivities via induced haploinsufficiency. Nature Genetics. 21: 278-83. PMID 10080179 DOI: 10.1038/6791  0.691
1999 Campbell MJ, Davis RW. On The In Vivo Function Of The Reca Atpase Journal of Molecular Biology. 286: 437-445. PMID 9973562 DOI: 10.1006/Jmbi.1998.2457  0.356
1999 Campbell MJ, Davis RW. Toxic mutations in the recA gene of E. coli prevent proper chromosome segregation. Journal of Molecular Biology. 286: 417-435. PMID 9973561 DOI: 10.1006/Jmbi.1998.2456  0.365
1999 Marziali A, Willis TD, Federspiel NA, Davis RW. An automated sample preparation system for large-scale DNA sequencing. Genome Research. 9: 457-462. DOI: 10.1101/Gr.9.5.457  0.306
1998 Stephens RS, Kalman S, Lammel C, Fan J, Marathe R, Aravind L, Mitchell W, Olinger L, Tatusov RL, Zhao Q, Koonin EV, Davis RW. Genome sequence of an obligate intracellular pathogen of humans: Chlamydia trachomatis. Science (New York, N.Y.). 282: 754-9. PMID 9784136 DOI: 10.1126/Science.282.5389.754  0.409
1998 Thorstenson YR, Hunicke-Smith SP, Oefner PJ, Davis RW. An Automated Hydrodynamic Process for Controlled, Unbiased DNA Shearing Genome Research. 8: 848-855. PMID 9724331 DOI: 10.1101/Gr.8.8.848  0.353
1998 Winzeler EA, Richards DR, Conway AR, Goldstein AL, Kalman S, McCullough MJ, McCusker JH, Stevens DA, Wodicka L, Lockhart DJ, Davis RW. Direct allelic variation scanning of the yeast genome. Science (New York, N.Y.). 281: 1194-7. PMID 9712584 DOI: 10.1126/Science.281.5380.1194  0.76
1998 Cho RJ, Campbell MJ, Winzeler EA, Steinmetz L, Conway A, Wodicka L, Wolfsberg TG, Gabrielian AE, Landsman D, Lockhart DJ, Davis RW. A genome-wide transcriptional analysis of the mitotic cell cycle. Molecular Cell. 2: 65-73. PMID 9702192 DOI: 10.1016/S1097-2765(00)80114-8  0.787
1998 Schena M, Heller RA, Theriault TP, Konrad K, Lachenmeier E, Davis RW. Microarrays: biotechnology's discovery platform for functional genomics Trends in Biotechnology. 16: 301-306. PMID 9675914 DOI: 10.1016/S0167-7799(98)01219-0  0.378
1998 Cho RJ, Fromont-Racine M, Wodicka L, Feierbach B, Stearns T, Legrain P, Lockhart DJ, Davis RW. Parallel analysis of genetic selections using whole genome oligonucleotide arrays. Proceedings of the National Academy of Sciences of the United States of America. 95: 3752-7. PMID 9520439 DOI: 10.1073/Pnas.95.7.3752  0.717
1997 Winzeler EA, Davis RW. Functional analysis of the yeast genome. Current Opinion in Genetics & Development. 7: 771-6. PMID 9468786 DOI: 10.1042/Bst028A112B  0.598
1997 Lashkari DA, DeRisi JL, McCusker JH, Namath AF, Gentile C, Hwang SY, Brown PO, Davis RW. Yeast microarrays for genome wide parallel genetic and gene expression analysis. Proceedings of the National Academy of Sciences of the United States of America. 94: 13057-62. PMID 9371799 DOI: 10.1073/Pnas.94.24.13057  0.426
1997 Underhill PA, Jin L, Lin AA, Mehdi SQ, Jenkins T, Vollrath D, Davis RW, Cavalli-Sforza LL, Oefner PJ. Detection of numerous Y chromosome biallelic polymorphisms by denaturing high-performance liquid chromatography. Genome Research. 7: 996-1005. PMID 9331370 DOI: 10.1101/Gr.7.10.996  0.304
1997 Lashkari DA, McCusker JH, Davis RW. Whole genome analysis: Experimental access to all genome sequenced segments through larger-scale efficient oligonucleotide synthesis and PCR Proceedings of the National Academy of Sciences of the United States of America. 94: 8945-8947. PMID 9256414 DOI: 10.1073/Pnas.94.17.8945  0.397
1997 Bussey H, Storms RK, Ahmed A, Albermann K, Allen E, Ansorge W, Araujo R, Aparicio A, Barrell B, Badcock K, Benes V, Botstein D, Bowman S, Brückner M, Carpenter J, ... Davis RW, et al. The nucleotide sequence of Saccharomyces cerevisiae chromosome XVI. Nature. 387: 103-5. PMID 9169875  0.577
1997 Dietrich FS, Mulligan J, Hennessy K, Yelton MA, Allen E, Araujo R, Aviles E, Berno A, Brennan T, Carpenter J, Chen E, Cherry JM, Chung E, Duncan M, Guzman E, ... ... Davis RW, et al. The nucleotide sequence of Saccharomyces cerevisiae chromosome V. Nature. 387: 78-81. PMID 9169868  0.726
1997 Heller RA, Schena M, Chai A, Shalon D, Bedilion T, Gilmore J, Woolley DE, Davis RW. Discovery and analysis of inflammatory disease-related genes using cDNA microarrays. Proceedings of the National Academy of Sciences of the United States of America. 94: 2150-5. PMID 9122163 DOI: 10.1073/Pnas.94.6.2150  0.331
1997 Agyare FD, Lashkari DA, Lagos A, Namath AF, Lagos G, Davis RW, Lemieux B. Mapping expressed sequence tag sites on yeast artificial chromosome clones of Arabidopsis thaliana DNA. Genome Research. 7: 1-9. PMID 9037596 DOI: 10.1101/Gr.7.1.1  0.379
1996 Shoemaker DD, Lashkari DA, Morris D, Mittmann M, Davis RW. Quantitative phenotypic analysis of yeast deletion mutants using a highly parallel molecular bar-coding strategy. Nature Genetics. 14: 450-456. PMID 8944025 DOI: 10.1038/Ng1296-450  0.402
1996 Oefner PJ, Hunicke-Smith SP, Chiang L, Dietrich F, Mulligan J, Davis RW. Efficient random subcloning of DNA sheared in a recirculating point-sink flow system. Nucleic Acids Research. 24: 3879-86. PMID 8918787 DOI: 10.1093/Nar/24.20.3879  0.565
1996 Schena M, Shalon D, Heller R, Chai A, Brown PO, Davis RW. Parallel human genome analysis: microarray-based expression monitoring of 1000 genes. Proceedings of the National Academy of Sciences of the United States of America. 93: 10614-9. PMID 8855227 DOI: 10.1073/Pnas.93.20.10614  0.406
1996 Goffeau A, Barrell G, Bussey H, Davis RW, Dujon B, Feldmann H, Galibert F, Hoheisel JD, Jacq C, Johnston M, Louis EJ, Mewes HW, Murakami Y, Philippsen P, Tettelin H, et al. Life with 6000 genes Science. 274: 546-567. PMID 8849441 DOI: 10.1126/Science.274.5287.546  0.424
1995 Schena M, Shalon D, Davis RW, Brown PO. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science (New York, N.Y.). 270: 467-70. PMID 7569999 DOI: 10.1126/Science.270.5235.467  0.376
1994 Preuss D, Rhee SY, Davis RW. Tetrad analysis possible in Arabidopsis with mutation of the QUARTET (QRT) genes. Science (New York, N.Y.). 264: 1458-60. PMID 8197459 DOI: 10.1126/Science.8197459  0.333
1994 Lipshutz RJ, Taverner F, Hennessy K, Hartzell G, Davis R. DNA sequence confidence estimation. Genomics. 19: 417-24. PMID 8188283 DOI: 10.1006/Geno.1994.1089  0.315
1994 Lloyd AM, Davis RW. Functional expression of the yeast FLP/FRT site-specific recombination system in Nicotiana tabacum Mgg Molecular &Amp; General Genetics. 242: 653-657. PMID 8152416 DOI: 10.1007/Bf00283419  0.308
1994 Schena M, Davis RW. Structure of homeobox-leucine zipper genes suggests a model for the evolution of gene families Proceedings of the National Academy of Sciences of the United States of America. 91: 8393-8397. PMID 7915839 DOI: 10.1073/Pnas.91.18.8393  0.371
1994 Foreman PK, Davis RW. Cloning vectors for the synthesis of epitope-tagged, truncated and chimeric proteins in Saccharomyces cerevisiae Gene. 144: 63-68. PMID 7517907 DOI: 10.1016/0378-1119(94)90204-6  0.309
1993 Schena M, Lloyd AM, Davis RW. The HAT4 gene of Arabidopsis encodes a developmental regulator Genes and Development. 7: 367-379. PMID 8449400 DOI: 10.1101/Gad.7.3.367  0.324
1993 Ramer SW, Davis RW. A dominant truncation allele identifies a gene, STE20, that encodes a putative protein kinase necessary for mating in Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America. 90: 452-456. PMID 8421676 DOI: 10.1073/Pnas.90.2.452  0.331
1992 Ramer SW, Elledge SJ, Davis RW. Dominant genetics using a yeast genomic library under the control of a strong inducible promoter. Proceedings of the National Academy of Sciences of the United States of America. 89: 11589-93. PMID 1454852 DOI: 10.1073/Pnas.89.23.11589  0.618
1992 Struhl K, Cameron JR, Davis RW. Functional genetic expression of eukaryotic DNA in Escherichia coli. 1976. Biotechnology (Reading, Mass.). 24: 353-7. PMID 1422039  0.473
1992 Schena M, Davis RW. HD-Zip proteins: members of an Arabidopsis homeodomain protein superfamily. Proceedings of the National Academy of Sciences of the United States of America. 89: 3894-3898. PMID 1349174 DOI: 10.1073/Pnas.89.9.3894  0.352
1991 Foreman PK, Davis RW, Sachs AB. The Saccharomyces cerevisiae RPB4 gene is tightly linked to the TIF2 gene. Nucleic Acids Research. 19: 2781. PMID 2041753 DOI: 10.1093/Nar/19.10.2781  0.676
1991 Schena M, Lloyd AM, Davis RW. A steroid-inducible gene expression system for plant cells Proceedings of the National Academy of Sciences of the United States of America. 88: 10421-10425. PMID 1961707 DOI: 10.1073/Pnas.88.23.10421  0.319
1991 Elledge SJ, Mulligan JT, Ramer SW, Spottswood M, Davis RW. Lambda YES: a multifunctional cDNA expression vector for the isolation of genes by complementation of yeast and Escherichia coli mutations. Proceedings of the National Academy of Sciences of the United States of America. 88: 1731-5. PMID 1848010 DOI: 10.1073/Pnas.88.5.1731  0.549
1991 Young RA, Davis RW. Gene isolation with lambda gt11 system. Methods in Enzymology. 194: 230-8. PMID 1826035 DOI: 10.1016/0076-6879(91)94018-8  0.543
1991 Sadhale PP, Sapolsky R, Davis RW, Butler JS, Platt T. Polymerase chain reaction mapping of yeast GAL7 mRNA polyadenylation sites demonstrates that 3' end processing in vitro faithfully reproduces the 3' ends observed in vivo Nucleic Acids Research. 19: 3683-3688. PMID 1677180 DOI: 10.1093/Nar/19.13.3683  0.323
1990 Sachs AB, Davis RW. Translation initiation and ribosomal biogenesis: involvement of a putative rRNA helicase and RPL46. Science (New York, N.Y.). 247: 1077-9. PMID 2408148 DOI: 10.1126/Science.2408148  0.663
1990 Braam J, Davis RW. Rain-, wind-, and touch-induced expression of calmodulin and calmodulin-related genes in Arabidopsis Cell. 60: 357-364. PMID 2302732 DOI: 10.1016/0092-8674(90)90587-5  0.313
1990 Elledge SJ, Davis RW. Two genes differentially regulated in the cell cycle and by DNA-damaging agents encode alternative regulatory subunits of ribonucleotide reductase. Genes & Development. 4: 740-51. PMID 2199320 DOI: 10.1101/Gad.4.5.740  0.536
1990 Cai M, Davis RW. Yeast centromere binding protein CBF1, of the helix-loop-helix protein family, is required for chromosome stability and methionine prototrophy Cell. 61: 437-446. PMID 2185892 DOI: 10.1016/0092-8674(90)90525-J  0.364
1990 Sachs A, Davis R. The poly(A)-binding protein is required for translation initiation and poly(A) tail shortening. Molecular Biology Reports. 14: 73. PMID 1972975 DOI: 10.1007/Bf00360421  0.616
1990 Jasin M, Elledge SJ, Davis RW, Berg P. Gene targeting at the human CD4 locus by epitope addition. Genes & Development. 4: 157-66. PMID 1692556 DOI: 10.1101/Gad.4.2.157  0.52
1989 Elledge SJ, Davis RW. Identification of the DNA damage-responsive element of RNR2 and evidence that four distinct cellular factors bind it. Molecular and Cellular Biology. 9: 5373-86. PMID 2685561 DOI: 10.1128/Mcb.9.12.5373  0.544
1989 Sachs AB, Davis RW. The poly(A) binding protein is required for poly(A) shortening and 60S ribosomal subunit-dependent translation initiation. Cell. 58: 857-67. PMID 2673535 DOI: 10.1016/0092-8674(89)90938-0  0.637
1989 Traver CN, Klapholz S, Hyman RW, Davis RW. Rapid screening of a human genomic library in yeast artificial chromosomes for single-copy sequences Proceedings of the National Academy of Sciences of the United States of America. 86: 5898-5902. PMID 2668948 DOI: 10.1073/Pnas.86.15.5898  0.681
1989 Cai MJ, Davis RW. Purification of a yeast centromere-binding protein that is able to distinguish single base-pair mutations in its recognition site. Molecular and Cellular Biology. 9: 2544-50. PMID 2668736 DOI: 10.1128/Mcb.9.6.2544  0.331
1989 Elledge SJ, Sugiono P, Guarente L, Davis RW. Genetic selection for genes encoding sequence-specific DNA-binding proteins. Proceedings of the National Academy of Sciences of the United States of America. 86: 3689-93. PMID 2657725 DOI: 10.1073/Pnas.86.10.3689  0.665
1989 Elledge SJ, Davis RW. Position and density effects on repression by stationary and mobile DNA-binding proteins. Genes & Development. 3: 185-97. PMID 2523839 DOI: 10.1101/Gad.3.2.185  0.517
1989 Elledge SJ, Davis RW. DNA damage induction of ribonucleotide reductase. Molecular and Cellular Biology. 9: 4932-40. PMID 2513480 DOI: 10.1128/Mcb.9.11.4932  0.521
1988 Snyder M, Sapolsky RJ, Davis RW. Transcription interferes with elements important for chromosome maintenance in Saccharomyces cerevisiae. Molecular and Cellular Biology. 8: 2184-94. PMID 3290652 DOI: 10.1128/Mcb.8.5.2184  0.562
1988 Elledge SJ, Davis RW. A family of versatile centromeric vectors designed for use in the sectoring-shuffle mutagenesis assay in Saccharomyces cerevisiae. Gene. 70: 303-12. PMID 3063604 DOI: 10.1016/0378-1119(88)90202-8  0.553
1988 Fasullo MT, Davis RW. Direction of chromosome rearrangements in Saccharomyces cerevisiae by use of his3 recombinational substrates Molecular and Cellular Biology. 8: 4370-4380. PMID 3054515 DOI: 10.1128/Mcb.8.10.4370  0.372
1988 Vollrath D, Davis RW, Connelly C, Hieter P. Physical mapping of large DNA by chromosome fragmentation Proceedings of the National Academy of Sciences of the United States of America. 85: 6027-6031. PMID 3045811 DOI: 10.1073/Pnas.85.16.6027  0.582
1988 Snyder M, Davis RW. SPA1: a gene important for chromosome segregation and other mitotic functions in S. cerevisiae. Cell. 54: 743-54. PMID 3044610 DOI: 10.1016/S0092-8674(88)90977-4  0.597
1988 Orbach MJ, Vollrath D, Davis RW, Yanofsky C. An electrophoretic karyotype of Neurospora crassa Molecular and Cellular Biology. 8: 1469-1473. PMID 2967910 DOI: 10.1128/Mcb.8.4.1469  0.309
1988 Vollrath D, Nathans J, Davis RW. Tandem array of human visual pigment genes at Xq28. Science (New York, N.Y.). 240: 1669-72. PMID 2837827 DOI: 10.1126/Science.2837827  0.357
1988 Berlani RE, Walbot V, Davis RW. Sequence analysis of three fragments of maize nuclear DNA which replicate autonomously in yeast Plant Molecular Biology. 11: 173-182. DOI: 10.1007/Bf00015669  0.347
1988 Berlani RE, Davis RW, Walbot V. Genomic organization of two families of highly repeated nuclear DNA sequences of maize selected for autonomous replicating activity in yeast Plant Molecular Biology. 11: 161-172. DOI: 10.1007/Bf00015668  0.366
1987 Ecker JR, Davis RW. Plant defense genes are regulated by ethylene. Proceedings of the National Academy of Sciences of the United States of America. 84: 5202-6. PMID 16593860 DOI: 10.1073/Pnas.84.15.5202  0.511
1987 Konforti BB, Davis RW. 3' homologous free ends are required for stable joint molecule formation by the RecA and single-stranded binding proteins of Escherichia coli Proceedings of the National Academy of Sciences of the United States of America. 84: 690-694. PMID 3543934 DOI: 10.1073/Pnas.84.3.690  0.322
1987 Sachs AB, Davis RW, Kornberg RD. A single domain of yeast poly(A)-binding protein is necessary and sufficient for RNA binding and cell viability. Molecular and Cellular Biology. 7: 3268-76. PMID 3313012 DOI: 10.1128/Mcb.7.9.3268  0.704
1987 Elledge SJ, Davis RW. Identification and isolation of the gene encoding the small subunit of ribonucleotide reductase from Saccharomyces cerevisiae: DNA damage-inducible gene required for mitotic viability. Molecular and Cellular Biology. 7: 2783-93. PMID 3313004 DOI: 10.1128/Mcb.7.8.2783  0.575
1987 Fasullo MT, Davis RW. Recombinational substrates designed to study recombination between unique and repetitive sequences in vivo Proceedings of the National Academy of Sciences of the United States of America. 84: 6215-6219. PMID 3306671 DOI: 10.1073/Pnas.84.17.6215  0.375
1987 Snyder M, Elledge S, Sweetser D, Young RA, Davis RW. Lambda gt 11: gene isolation with antibody probes and other applications. Methods in Enzymology. 154: 107-28. PMID 2448583 DOI: 10.1016/0076-6879(87)54073-3  0.729
1986 Ecker JR, Davis RW. Inhibition of gene expression in plant cells by expression of antisense RNA. Proceedings of the National Academy of Sciences of the United States of America. 83: 5372-6. PMID 16593734 DOI: 10.1073/Pnas.83.15.5372  0.535
1986 Snyder M, Buchman AR, Davis RW. Bent DNA at a yeast autonomously replicating sequence. Nature. 324: 87-9. PMID 3785376 DOI: 10.1038/324087A0  0.556
1986 Mann C, Davis RW. Structure and sequence of the centromeric DNA of chromosome 4 in Saccharomyces cerevisiae. Molecular and Cellular Biology. 6: 241-245. PMID 3537685 DOI: 10.1128/Mcb.6.1.241  0.319
1986 Mann C, Davis RW. Meiotic disjunction of circular minichromosomes in yeast does not require DNA homology Proceedings of the National Academy of Sciences of the United States of America. 83: 6017-6019. PMID 3526347 DOI: 10.1073/Pnas.83.16.6017  0.354
1986 Snyder M, Elledge S, Davis RW. Rapid mapping of antigenic coding regions and constructing insertion mutations in yeast genes by mini-Tn10 "transplason" mutagenesis. Proceedings of the National Academy of Sciences of the United States of America. 83: 730-4. PMID 3003747 DOI: 10.1073/Pnas.83.3.730  0.67
1985 Hieter P, Mann C, Snyder M, Davis RW. Mitotic stability of yeast chromosomes: a colony color assay that measures nondisjunction and chromosome loss. Cell. 40: 381-92. PMID 3967296 DOI: 10.1016/0092-8674(85)90152-7  0.652
1985 Johnson LM, Snyder M, Chang LM, Davis RW, Campbell JL. Isolation of the gene encoding yeast DNA polymerase I. Cell. 43: 369-77. PMID 3907855 DOI: 10.1016/0092-8674(85)90042-X  0.613
1985 Young RA, Mehra V, Sweetser D, Buchanan T, Clark-Curtiss J, Davis RW, Bloom BR. Genes for the major protein antigens of the leprosy parasite Mycobacterium leprae. Nature. 316: 450-2. PMID 3894979 DOI: 10.1038/316450A0  0.484
1985 Hieter P, Pridmore D, Hegemann JH, Thomas M, Davis RW, Philippsen P. Functional selection and analysis of yeast centromeric DNA Cell. 42: 913-921. PMID 2996783 DOI: 10.1016/0092-8674(85)90287-9  0.608
1985 Young RA, Bloom BR, Grosskinsky CM, Ivanyi J, Thomas D, Davis RW. Dissection of Mycobacterium tuberculosis antigens using recombinant DNA. Proceedings of the National Academy of Sciences of the United States of America. 82: 2583-7. PMID 2581251 DOI: 10.1073/Pnas.82.9.2583  0.512
1984 Johnston M, Davis RW. Sequences that regulate the divergent GAL1-GAL10 promoter in Saccharomyces cerevisiae. Molecular and Cellular Biology. 4: 1440-8. PMID 6092912 DOI: 10.1128/Mcb.4.8.1440  0.411
1983 Young RA, Davis RW. Yeast RNA polymerase II genes: isolation with antibody probes. Science (New York, N.Y.). 222: 778-82. PMID 6356359 DOI: 10.1126/Science.6356359  0.504
1983 Mann C, Davis RW. Instability of dicentric plasmids in yeast Proceedings of the National Academy of Sciences of the United States of America. 80: 228-232. PMID 6337372 DOI: 10.1073/Pnas.80.1.228  0.369
1983 Rine J, Hansen W, Hardeman E, Davis RW. Targeted selection of recombinant clones through gene dosage effects. Proceedings of the National Academy of Sciences of the United States of America. 80: 6750-6754. PMID 6316322 DOI: 10.1073/Pnas.80.22.6750  0.386
1983 Young RA, Davis RW. Efficient isolation of genes by using antibody probes. Proceedings of the National Academy of Sciences of the United States of America. 80: 1194-8. PMID 6219389 DOI: 10.1073/Pnas.80.5.1194  0.54
1983 Elder RT, Loh EY, Davis RW. RNA from the yeast transposable element Ty1 has both ends in the direct repeats, a structure similar to retrovirus RNA. Proceedings of the National Academy of Sciences of the United States of America. 80: 2432-2436. PMID 6189122 DOI: 10.1073/Pnas.80.9.2432  0.309
1982 Burr B, Burr FA, St John TP, Thomas M, Davis RW. Zein storage protein gene family of maize. An assessment of heterogeneity with cloned messenger RNA sequences. Journal of Molecular Biology. 154: 33-49. PMID 6896217 DOI: 10.1016/0022-2836(82)90415-6  0.388
1982 Stinchcomb DT, Mann C, Davis RW. Centromeric DNA from Saccharomyces cerevisiae. Journal of Molecular Biology. 158: 157-90. PMID 6750136 DOI: 10.1016/0022-2836(82)90427-2  0.376
1982 Scherer S, Mann C, Davis RW. Reversion of a promoter deletion in yeast Nature. 298: 815-819. PMID 6287274 DOI: 10.1038/298815A0  0.338
1982 Botstein D, Davis RW. Principles and Practice of Recombinant DNA Research with Yeast Cold Spring Harbor Monograph Archive. 607-636. DOI: 10.1101/087969180.11B.607  0.416
1981 Struhl K, Davis RW. Position effects in Saccharomyces cerevisiae. Journal of Molecular Biology. 152: 569-75. PMID 7035683 DOI: 10.1016/0022-2836(81)90269-2  0.521
1981 St John TP, Scherer S, McDonell MW, Davis RW. Deletion analysis of the Saccharomyces GAL gene cluster. Transcription from three promoters. Journal of Molecular Biology. 152: 317-34. PMID 7035681 DOI: 10.1016/0022-2836(81)90245-X  0.401
1981 St John TP, Davis RW. The organization and transcription of the galactose gene cluster of Saccharomyces. Journal of Molecular Biology. 152: 285-315. PMID 6276569 DOI: 10.1016/0022-2836(81)90244-8  0.377
1981 Struhl K, Davis RW. Promotor mutants of the yeast his3 gene. Journal of Molecular Biology. 152: 553-68. PMID 6173490 DOI: 10.1016/0022-2836(81)90268-0  0.579
1981 Struhl K, Davis RW. Transcription of the his3 gene region in Saccharomyces cerevisiae. Journal of Molecular Biology. 152: 535-52. PMID 6173489 DOI: 10.1016/0022-2836(81)90267-9  0.567
1980 Struhl K, Davis RW. Conservation and DNA sequence arrangement of the DNA polymerase I gene region from Klebsiella aerogenes, Klebsiella pneumoniae and Escherichia coli. Journal of Molecular Biology. 141: 343-68. PMID 6449602 DOI: 10.1016/0022-2836(80)90251-X  0.566
1980 Stinchcomb DT, Thomas M, Kelly J, Selker E, Davis RW. Eukaryotic DNA segments capable of autonomous replication in yeast. Proceedings of the National Academy of Sciences of the United States of America. 77: 4559-63. PMID 6449009 DOI: 10.1073/Pnas.77.8.4559  0.355
1980 Struhl K, Stinchcomb DT, Davis RW. A physiological study of functional expression in Escherichia coli of the cloned yeast imidazoleglycerolphosphate dehydratase gene. Journal of Molecular Biology. 136: 291-307. PMID 6445419 DOI: 10.1016/0022-2836(80)90375-7  0.584
1980 Scherer S, Davis RW. Recombination of dispersed repeated DNA sequences in yeast Science. 209: 1380-1384. PMID 6251545 DOI: 10.1126/Science.6251545  0.351
1980 Botstein D, White RL, Skolnick M, Davis RW. Construction of a genetic linkage map in man using restriction fragment length polymorphisms. American Journal of Human Genetics. 32: 314-31. PMID 6247908  0.444
1980 Davis RW, Thomas M, Cameron J, St. John TP, Scherer S, Padgett RA. [49] Rapid DNA isolations for enzymatic and hybridization analysis Methods in Enzymology. 65: 404-411. PMID 6246361 DOI: 10.1016/S0076-6879(80)65051-4  0.364
1980 Struhl K, Davis RW. A physical, genetic and transcriptional map of the cloned his3 gene region of Saccharomyces cerevisiae. Journal of Molecular Biology. 136: 309-32. PMID 6246242 DOI: 10.1016/0022-2836(80)90376-9  0.583
1979 Botstein D, Falco SC, Stewart SE, Brennan M, Scherer S, Stinchcomb DT, Struhl K, Davis RW. Sterile host yeasts (SHY): a eukaryotic system of biological containment for recombinant DNA experiments. Gene. 8: 17-24. PMID 395030 DOI: 10.1016/0378-1119(79)90004-0  0.538
1979 Scherer S, Davis RW. Replacement of chromosome segments with altered DNA sequences constructed in vitro Proceedings of the National Academy of Sciences of the United States of America. 76: 4951-4955. PMID 388424 DOI: 10.1073/Pnas.76.10.4951  0.385
1979 Stinchcomb DT, Struhl K, Davis RW. Isolation and characterisation of a yeast chromosomal replicator. Nature. 282: 39-43. PMID 388229 DOI: 10.1038/282039A0  0.557
1979 Cameron JR, Loh EY, Davis RW. Evidence for transposition of dispersed repetitive DNA families in yeast. Cell. 16: 739-51. PMID 378399 DOI: 10.1016/0092-8674(79)90090-4  0.358
1979 St John TP, Davis RW. Isolation of galactose-inducible DNA sequences from Saccharomyces cerevisiae by differential plaque filter hybridization. Cell. 16: 443-52. PMID 378392 DOI: 10.1016/0092-8674(79)90020-5  0.401
1979 Struhl K, Davis RW, Fink GR. Suppression of a yeast amber mutation in Escherichia coli. Nature. 279: 78-9. PMID 377096 DOI: 10.1038/279078A0  0.651
1979 Struhl K, Stinchcomb DT, Scherer S, Davis RW. High-frequency transformation of yeast: autonomous replication of hybrid DNA molecules. Proceedings of the National Academy of Sciences of the United States of America. 76: 1035-9. PMID 375221 DOI: 10.1073/Pnas.76.3.1035  0.581
1979 Olson MV, Hall BD, Cameron JR, Davis RW. Cloning of the yeast tyrosine transfer RNA genes in bacteriophage lambda. Journal of Molecular Biology. 127: 285-95. PMID 372541 DOI: 10.1016/0022-2836(79)90330-9  0.384
1978 Kramer RA, Philippsen P, Davis RW. Divergent transcription in the yeast ribosomal RNA coding region as shown by hybridization to separated strands and sequence analysis of cloned DNA Journal of Molecular Biology. 123: 405-416. PMID 357738 DOI: 10.1016/0022-2836(78)90087-6  0.339
1978 Philippsen P, Thomas M, Kramer RA, Davis RW. Unique arrangement of coding sequences for 5 S, 5.8 S, 18 S and 25 S ribosomal RNA in Saccharomyces cerevisiae as determined by R-loop and hybridization analysis Journal of Molecular Biology. 123: 387-404. PMID 357737 DOI: 10.1016/0022-2836(78)90086-4  0.302
1978 Philippsen P, Kramer RA, Davis RW. Cloning of the yeast ribosomal DNA repeat unit in SstI and HindIII lambda vectors using genetic and physical size selections Journal of Molecular Biology. 123: 371-386. PMID 357736 DOI: 10.1016/0022-2836(78)90085-2  0.398
1978 Ferguson J, Davis RW. A new electron microscopic technique for establishing the positions of genes: an analysis of the yeast ribosomal RNA coding region. Journal of Molecular Biology. 123: 417-430. PMID 211237 DOI: 10.1016/0022-2836(78)90088-8  0.336
1977 Struhl K, Davis RW. Production of a functional eukaryotic enzyme in Escherichia coli: cloning and expression of the yeast structural gene for imidazole-glycerolphosphate dehydratase (his3). Proceedings of the National Academy of Sciences of the United States of America. 74: 5255-9. PMID 341150 DOI: 10.1073/Pnas.74.12.5255  0.556
1977 Cameron JR, Philippsen P, Davis RW. Analysis of chromosomal integration and deletions of yeast plasmids. Nucleic Acids Research. 4: 1429-48. PMID 331256 DOI: 10.1093/Nar/4.5.1429  0.347
1977 Cameron JR, Davis RW. The effects of Escherichia coli and yeast DNA insertions on the growth of lambda bacteriophage. Science (New York, N.Y.). 196: 212-5. PMID 322285 DOI: 10.1126/Science.322285  0.329
1977 Panasenko SM, Cameron JR, Davis RW, Lehman IR. Five hundredfold overproduction of DNA ligase after induction of a hybrid lambda lysogen constructed in vitro. Science (New York, N.Y.). 196: 188-9. PMID 322281 DOI: 10.1126/Science.322281  0.346
1976 Kramer RA, Cameron JR, Davis RW. Isolation of bacteriophage λ containing yeast ribosomal RNA genes: Screening by in situ RNA hybridization to plaques Cell. 8: 227-232. PMID 786462 DOI: 10.1016/0092-8674(76)90006-4  0.346
1976 Thomas M, White RL, Davis RW. Hybridization of RNA to double-stranded DNA: formation of R-loops. Proceedings of the National Academy of Sciences of the United States of America. 73: 2294-8. PMID 781674 DOI: 10.1073/Pnas.73.7.2294  0.461
1976 Struhl K, Cameron JR, Davis RW. Functional genetic expression of eukaryotic DNA in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 73: 1471-5. PMID 775490 DOI: 10.1073/Pnas.73.5.1471  0.55
1975 Thomas M, Cameron JR, Davis RW. Viable molecular hybrids of bacteriophage lambda and eukaryotic DNA. Proceedings of the National Academy of Sciences of the United States of America. 71: 4579-83. PMID 4216019 DOI: 10.1073/Pnas.71.11.4579  0.337
1975 Cameron JR, Panasenko SM, Lehman IR, Davis RW. In vitro construction of bacteriophage lambda carrying segments of the Escherichia coli chromosome: selection of hybrids containing the gene for DNA ligase. Proceedings of the National Academy of Sciences of the United States of America. 72: 3416-20. PMID 1103146 DOI: 10.1073/Pnas.72.9.3416  0.344
1975 Mertz JE, Carbon J, Herzberg M, Davis RW, Berg P. Isolation and characterization of individual clones of simian virus 40 mutants containing deletions duplications and insertions in their DNA. Cold Spring Harbor Symposia On Quantitative Biology. 39: 69-84. PMID 169098 DOI: 10.1101/Sqb.1974.039.01.012  0.312
1975 Ferguson J, Davis RW. An electron microscopic method for studying and mapping the region of weak sequence homology between simian virus 40 and polyoma DNAs Journal of Molecular Biology. 94: 135-149. PMID 167178 DOI: 10.1016/0022-2836(75)90073-X  0.334
1974 Berg P, Baltimore D, Boyer HW, Cohen SN, Davis RW, Hogness DS, Nathans D, Roblin R, Watson JD, Weissman S, Zinder ND. Letter: Potential biohazards of recombinant DNA molecules. Science (New York, N.Y.). 185: 303. PMID 4600381  0.707
1974 Berg P, Baltimore D, Boyer HW, Cohen SN, Davis RW, Hogness DS, Nathans D, Roblin R, Watson JD, Weissman S, Zinder ND. Potential Biohazards of Recombinant DNA Molecules Science. 185: 303-303. DOI: 10.1126/Science.185.4148.303  0.709
1971 Parkinson JS, Davis RW. A physical map of the left arm of the lambda chromosome. Journal of Molecular Biology. 56: 425-8. PMID 5551397 DOI: 10.1016/0022-2836(71)90474-8  0.335
1971 Davis RW, Parkinson JS. Deletion mutants of bacteriophage lambda. 3. Physical structure of att-phi. Journal of Molecular Biology. 56: 403-23. PMID 5551396 DOI: 10.1016/0022-2836(71)90473-6  0.312
1971 Davis RW, Hyman RW. A study in evolution: the DNA base sequence homology between coliphages T7 and T3 Journal of Molecular Biology. 62: 287-296,IN3-IN8,297-. PMID 4944929 DOI: 10.1016/0022-2836(71)90428-1  0.658
1971 Schleif R, Greenblatt J, Davis RW. Dual control of arabinose genes on transducing phage lambda-dara. Journal of Molecular Biology. 59: 127-50. PMID 4934313 DOI: 10.1016/0022-2836(71)90417-7  0.382
1971 Simon MN, Davis RW, Davidson N. Heteroduplexes of DNA Molecules of Lambdoid Phages: Physical Mapping of Their Base Sequence Relationships by Electron Microscopy Cold Spring Harbor Monograph Archive. 2: 313-328. DOI: 10.1101/087969102.2.313  0.615
1971 Davis RW, Simon M, Davidson N. [31] Electron microscope heteroduplex methods for mapping regions of base sequence homology in nucleic acids Methods in Enzymology. 21: 413-428. DOI: 10.1016/S0076-6879(71)21033-8  0.564
1970 Clayton DA, Davis RW, Vinograd J. Homology and structural relationships between the dimeric and monomeric circular forms of mitochondrial DNA from human leukemic leukocytes. Journal of Molecular Biology. 47: 137-153. PMID 5265062 DOI: 10.1016/0022-2836(70)90335-9  0.329
1970 Lee CS, Davis RW, Davidson N. A physical study by electron microscopy of the terminally reptitious, circularly permuted DNA from the coliphage particles of Escherichia coli 15. Journal of Molecular Biology. 48: 1-22. PMID 4915293 DOI: 10.1016/0022-2836(70)90215-9  0.594
1970 Davis RW, Hyman RW. Physical Locations of the in vitro RNA Initiation Site and Termination Sites of T7M DNA Cold Spring Harbor Symposia On Quantitative Biology. 35: 269-281. DOI: 10.1101/Sqb.1970.035.01.037  0.61
1969 Knippers R, Razin A, Davis R, Sinsheimer RL. The process of infection with Bacteriophage phi-X174. XXIX. In vivo studies on the synthesis of the single-stranded DNA of progeny phi-X174 bacteriophage. Journal of Molecular Biology. 45: 237-63. PMID 5367027 DOI: 10.1016/0022-2836(69)90103-X  0.306
1968 Davis RW, Davidson N. Electron-microscopic visualization of deletion mutations. Proceedings of the National Academy of Sciences of the United States of America. 60: 243-50. PMID 5241526 DOI: 10.1073/Pnas.60.1.243  0.565
Show low-probability matches.