| Year |
Citation |
Score |
| 2024 |
Wei L, Song L, Dunker AK, Foster JA, Uversky VN, Goh GK. A Comparative Experimental and Computational Study on the Nature of the Pangolin-CoV and COVID-19 Omicron. International Journal of Molecular Sciences. 25. PMID 39062780 DOI: 10.3390/ijms25147537 |
0.38 |
|
| 2023 |
Kulkarni P, Brocca S, Dunker AK, Longhi S. Per Aspera ad Chaos: Vladimir Uversky's Odyssey through the Strange World of Intrinsically Disordered Proteins. Biomolecules. 13. PMID 37371595 DOI: 10.3390/biom13061015 |
0.399 |
|
| 2022 |
Goh GK, Dunker AK, Foster JA, Uversky VN. A Study on the Nature of SARS-CoV-2 Using the Shell Disorder Models: Reproducibility, Evolution, Spread, and Attenuation. Biomolecules. 12. PMID 36291562 DOI: 10.3390/biom12101353 |
0.304 |
|
| 2022 |
Piersimoni L, Abd El Malek M, Bhatia T, Bender J, Brankatschk C, Calvo Sánchez J, Dayhoff GW, Di Ianni A, Figueroa Parra JO, Garcia-Martinez D, Hesselbarth J, Köppen J, Lauth LM, Lippik L, Machner L, ... ... Dunker AK, et al. Lighting up Nobel Prize-winning studies with protein intrinsic disorder. Cellular and Molecular Life Sciences : Cmls. 79: 449. PMID 35882686 DOI: 10.1007/s00018-022-04468-y |
0.44 |
|
| 2022 |
Ahmed SS, Rifat ZT, Lohia R, Campbell AJ, Dunker AK, Rahman MS, Iqbal S. Characterization of intrinsically disordered regions in proteins informed by human genetic diversity. Plos Computational Biology. 18: e1009911. PMID 35275927 DOI: 10.1371/journal.pcbi.1009911 |
0.402 |
|
| 2022 |
Bondos SE, Dunker AK, Uversky VN. Intrinsically disordered proteins play diverse roles in cell signaling. Cell Communication and Signaling : Ccs. 20: 20. PMID 35177069 DOI: 10.1186/s12964-022-00821-7 |
0.329 |
|
| 2021 |
Bondos SE, Dunker AK, Uversky VN. On the roles of intrinsically disordered proteins and regions in cell communication and signaling. Cell Communication and Signaling : Ccs. 19: 88. PMID 34461937 DOI: 10.1186/s12964-021-00774-3 |
0.431 |
|
| 2020 |
Zhao B, Katuwawala A, Oldfield CJ, Dunker AK, Faraggi E, Gsponer J, Kloczkowski A, Malhis N, Mirdita M, Obradovic Z, Söding J, Steinegger M, Zhou Y, Kurgan L. DescribePROT: database of amino acid-level protein structure and function predictions. Nucleic Acids Research. PMID 33119734 DOI: 10.1093/nar/gkaa931 |
0.403 |
|
| 2020 |
Goh GK, Dunker AK, Foster JA, Uversky VN. A Novel Strategy for the Development of Vaccines for SARS-CoV-2 (COVID-19) and Other Viruses Using AI and Viral Shell Disorder. Journal of Proteome Research. PMID 33006287 DOI: 10.1021/acs.jproteome.0c00672 |
0.331 |
|
| 2020 |
Goh GK, Dunker AK, Foster JA, Uversky VN. Shell disorder analysis suggests that pangolins offered a window for a silent spread of an attenuated SARS-CoV-2 precursor among humans. Journal of Proteome Research. PMID 32790362 DOI: 10.1021/Acs.Jproteome.0C00460 |
0.407 |
|
| 2020 |
Zhou J, Oldfield CJ, Yan W, Shen B, Dunker AK. Identification of Intrinsic Disorder in Complexes from the Protein Data Bank. Acs Omega. 5: 17883-17891. PMID 32743159 DOI: 10.1021/acsomega.9b03927 |
0.52 |
|
| 2020 |
Oldfield CJ, Fan X, Wang C, Dunker AK, Kurgan L. Computational Prediction of Intrinsic Disorder in Protein Sequences with the disCoP Meta-predictor. Methods in Molecular Biology (Clifton, N.J.). 2141: 21-35. PMID 32696351 DOI: 10.1007/978-1-0716-0524-0_2 |
0.573 |
|
| 2020 |
Goh GK, Dunker AK, Foster JA, Uversky VN. Shell disorder analysis predicts greater resilience of the SARS-CoV-2 (COVID-19) outside the body and in body fluids. Microbial Pathogenesis. 104177. PMID 32244041 DOI: 10.1016/J.Micpath.2020.104177 |
0.354 |
|
| 2020 |
Kian-Meng Goh G, Dunker AK, Foster JA, Uversky VN. Nipah shell disorder, modes of infection, and virulence. Microbial Pathogenesis. 103976. PMID 31940461 DOI: 10.1016/J.Micpath.2020.103976 |
0.412 |
|
| 2020 |
Alterovitz WL, Faraggi E, Oldfield CJ, Meng J, Xue B, Huang F, Romero P, Kloczkowski A, Uversky VN, Dunker AK. Many-to-one binding by intrinsically disordered protein regions. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 25: 159-170. PMID 31797594 |
0.409 |
|
| 2020 |
Rifat Z, Ahmed S, Campbell AJ, Dunker AK, Rahman S, Iqbal S. Map of Genetically Constrained Regions in Human Intrinsically Disordered Proteins Biophysical Journal. 118: 537a. DOI: 10.1016/J.Bpj.2019.11.2942 |
0.452 |
|
| 2020 |
Ahmed S, Rifat Z, Campbell AJ, Dunker AK, Rahman S, Iqbal S. Burden of Functional Features and Genetic Variations in Human Intrinsically Disordered Proteins Biophysical Journal. 118: 5a. DOI: 10.1016/J.Bpj.2019.11.220 |
0.47 |
|
| 2020 |
Faraggi E, Dunker AK, Jernigan RL, Kloczkowski A. Entropy, Fluctuations, and Disordered Proteins. Linking between Sequence, Structure, and Disorder Information Biophysical Journal. 118: 371a. DOI: 10.1016/J.Bpj.2019.11.2124 |
0.546 |
|
| 2019 |
Faraggi E, Dunker AK, Jernigan RL, Kloczkowski A. Entropy, Fluctuations, and Disordered Proteins. Entropy (Basel, Switzerland). 21. PMID 32336912 DOI: 10.3390/E21080764 |
0.552 |
|
| 2019 |
Hatos A, Hajdu-Soltész B, Monzon AM, Palopoli N, Álvarez L, Aykac-Fas B, Bassot C, Benítez GI, Bevilacqua M, Chasapi A, Chemes L, Davey NE, Davidović R, Dunker AK, Elofsson A, et al. DisProt: intrinsic protein disorder annotation in 2020. Nucleic Acids Research. PMID 31713636 DOI: 10.1093/Nar/Gkz975 |
0.519 |
|
| 2019 |
Goh GK, Dunker AK, Foster JA, Uversky VN. Zika and Flavivirus Shell Disorder: Virulence and Fetal Morbidity. Biomolecules. 9. PMID 31698857 DOI: 10.3390/biom9110710 |
0.352 |
|
| 2019 |
Zhou J, Oldfield CJ, Yan W, Shen B, Dunker AK. Intrinsically disordered domains: Sequence ➔ disorder ➔ function relationships. Protein Science : a Publication of the Protein Society. PMID 31299122 DOI: 10.1002/Pro.3680 |
0.535 |
|
| 2018 |
Yruela I, Contreras-Moreira B, Dunker AK, Niklas KJ. Evolution of Protein Ductility in Duplicated Genes of Plants. Frontiers in Plant Science. 9: 1216. PMID 30177944 DOI: 10.3389/Fpls.2018.01216 |
0.449 |
|
| 2018 |
Zhou J, Dunker AK. Regulating Protein Function by Delayed Folding. Structure (London, England : 1993). 26: 679-681. PMID 29719237 DOI: 10.1016/J.Str.2018.04.011 |
0.461 |
|
| 2018 |
Niklas KJ, Dunker AK, Yruela I. The evolutionary origins of cell type diversification and the role of intrinsically disordered proteins. Journal of Experimental Botany. PMID 29394379 DOI: 10.1093/Jxb/Erx493 |
0.474 |
|
| 2017 |
Saravanan KM, Dunker AK, Krishnaswamy S. Sequence fingerprints distinguish erroneous from correct predictions of intrinsically disordered protein regions. Journal of Biomolecular Structure & Dynamics. 36: 4338-4351. PMID 29228892 DOI: 10.1080/07391102.2017.1415822 |
0.467 |
|
| 2017 |
Sormanni P, Piovesan D, Heller GT, Bonomi M, Kukic P, Camilloni C, Fuxreiter M, Dosztanyi Z, Pappu RV, Babu MM, Longhi S, Tompa P, Dunker AK, Uversky VN, Tosatto SC, et al. Simultaneous quantification of protein order and disorder. Nature Chemical Biology. 13: 339-342. PMID 28328918 DOI: 10.1038/Nchembio.2331 |
0.529 |
|
| 2017 |
Minde DP, Dunker AK, Lilley KS. Time, space, and disorder in the expanding proteome universe. Proteomics. 17. PMID 28145059 DOI: 10.1002/Pmic.201600399 |
0.431 |
|
| 2016 |
Piovesan D, Tabaro F, Mičetić I, Necci M, Quaglia F, Oldfield CJ, Aspromonte MC, Davey NE, Davidović R, Dosztányi Z, Elofsson A, Gasparini A, Hatos A, Kajava AV, Kalmar L, ... ... Dunker AK, et al. DisProt 7.0: a major update of the database of disordered proteins. Nucleic Acids Research. PMID 27965415 DOI: 10.1093/Nar/Gkw1279 |
0.572 |
|
| 2016 |
Piovesan D, Tabaro F, Mičetić I, Necci M, Quaglia F, Oldfield CJ, Aspromonte MC, Davey NE, Davidović R, Dosztányi Z, Elofsson A, Gasparini A, Hatos A, Kajava AV, Kalmar L, ... ... Dunker AK, et al. DisProt 7.0: a major update of the database of disordered proteins. Nucleic Acids Research. PMID 27899601 DOI: 10.1093/Nar/Gkw1056 |
0.574 |
|
| 2016 |
Goh GK, Dunker AK, Uversky VN. Correlating Flavivirus virulence and levels of intrinsic disorder in shell proteins: protective roles vs. immune evasion. Molecular Biosystems. PMID 27102744 DOI: 10.1039/C6Mb00228E |
0.42 |
|
| 2015 |
Yan J, Dunker AK, Uversky VN, Kurgan L. Molecular recognition features (MoRFs) in three domains of life. Molecular Biosystems. PMID 26651072 DOI: 10.1039/C5Mb00640F |
0.607 |
|
| 2015 |
Dunker AK, Oldfield CJ. Back to the Future: Nuclear Magnetic Resonance and Bioinformatics Studies on Intrinsically Disordered Proteins. Advances in Experimental Medicine and Biology. 870: 1-34. PMID 26387098 DOI: 10.1007/978-3-319-20164-1_1 |
0.473 |
|
| 2015 |
Huang F, Oldfield CJ, Xue B, Hsu WL, Meng J, Liu X, Shen L, Romero P, Uversky VN, Dunker AK. Erratum to: Improving protein order-disorder classification using charge-hydropathy plots. Bmc Bioinformatics. 16: 241. PMID 26227315 DOI: 10.1186/S12859-015-0646-5 |
0.593 |
|
| 2015 |
Goh GK, Dunker AK, Uversky VN. Detection of links between Ebola nucleocapsid and virulence using disorder analysis. Molecular Biosystems. 11: 2337-44. PMID 26086270 DOI: 10.1039/C5Mb00240K |
0.46 |
|
| 2015 |
Goh GK, Dunker AK, Uversky VN. Shell disorder, immune evasion and transmission behaviors among human and animal retroviruses. Molecular Biosystems. 11: 2312-23. PMID 26080321 DOI: 10.1039/C5Mb00277J |
0.433 |
|
| 2015 |
Niklas KJ, Bondos SE, Dunker AK, Newman SA. Rethinking gene regulatory networks in light of alternative splicing, intrinsically disordered protein domains, and post-translational modifications. Frontiers in Cell and Developmental Biology. 3: 8. PMID 25767796 DOI: 10.3389/Fcell.2015.00008 |
0.439 |
|
| 2015 |
Dolan PT, Roth AP, Xue B, Sun R, Dunker AK, Uversky VN, LaCount DJ. Intrinsic disorder mediates hepatitis C virus core-host cell protein interactions. Protein Science : a Publication of the Protein Society. 24: 221-35. PMID 25424537 DOI: 10.1002/Pro.2608 |
0.492 |
|
| 2015 |
Dunker AK, Bondos SE, Huang F, Oldfield CJ. Intrinsically disordered proteins and multicellular organisms. Seminars in Cell & Developmental Biology. 37: 44-55. PMID 25307499 DOI: 10.1016/J.Semcdb.2014.09.025 |
0.48 |
|
| 2014 |
Huang F, Oldfield CJ, Xue B, Hsu WL, Meng J, Liu X, Shen L, Romero P, Uversky VN, Dunker A. Improving protein order-disorder classification using charge-hydropathy plots. Bmc Bioinformatics. 15: S4. PMID 25559583 DOI: 10.1186/1471-2105-15-S17-S4 |
0.638 |
|
| 2014 |
Yang JY, Dunker A, Liu JS, Qin X, Arabnia HR, Yang W, Niemierko A, Chen Z, Luo Z, Wang L, Liu Y, Xu D, Deng Y, Tong W, Yang M. Advances in translational bioinformatics facilitate revealing the landscape of complex disease mechanisms. Bmc Bioinformatics. 15: I1. PMID 25559210 DOI: 10.1186/1471-2105-15-S17-I1 |
0.371 |
|
| 2014 |
Pejaver V, Hsu WL, Xin F, Dunker AK, Uversky VN, Radivojac P. The structural and functional signatures of proteins that undergo multiple events of post-translational modification. Protein Science : a Publication of the Protein Society. 23: 1077-93. PMID 24888500 DOI: 10.1002/Pro.2494 |
0.669 |
|
| 2014 |
van der Lee R, Buljan M, Lang B, Weatheritt RJ, Daughdrill GW, Dunker AK, Fuxreiter M, Gough J, Gsponer J, Jones DT, Kim PM, Kriwacki RW, Oldfield CJ, Pappu RV, Tompa P, et al. Classification of intrinsically disordered regions and proteins. Chemical Reviews. 114: 6589-631. PMID 24773235 DOI: 10.1021/Cr400525M |
0.466 |
|
| 2014 |
Oldfield CJ, Dunker AK. Intrinsically disordered proteins and intrinsically disordered protein regions. Annual Review of Biochemistry. 83: 553-84. PMID 24606139 DOI: 10.1146/Annurev-Biochem-072711-164947 |
0.572 |
|
| 2014 |
Varadi M, Kosol S, Lebrun P, Valentini E, Blackledge M, Dunker AK, Felli IC, Forman-Kay JD, Kriwacki RW, Pierattelli R, Sussman J, Svergun DI, Uversky VN, Vendruscolo M, Wishart D, et al. pE-DB: a database of structural ensembles of intrinsically disordered and of unfolded proteins. Nucleic Acids Research. 42: D326-35. PMID 24174539 DOI: 10.1093/Nar/Gkt960 |
0.475 |
|
| 2014 |
Peng Z, Oldfield CJ, Xue B, Mizianty MJ, Dunker AK, Kurgan L, Uversky VN. A creature with a hundred waggly tails: intrinsically disordered proteins in the ribosome. Cellular and Molecular Life Sciences : Cmls. 71: 1477-504. PMID 23942625 DOI: 10.1007/S00018-013-1446-6 |
0.608 |
|
| 2014 |
Niklas KJ, Cobb ED, Dunker AK. The number of cell types, information content, and the evolution of complex multicellularity Acta Societatis Botanicorum Poloniae. 83: 337-347. DOI: 10.5586/Asbp.2014.034 |
0.394 |
|
| 2013 |
Williams RW, Xue B, Uversky VN, Dunker AK. Distribution and cluster analysis of predicted intrinsically disordered protein Pfam domains. Intrinsically Disordered Proteins. 1: e25724. PMID 28516017 DOI: 10.4161/idp.25724 |
0.407 |
|
| 2013 |
Kurup K, Dunker AK, Krishnaswamy S. Functional fragments of disorder in outer membrane β barrel proteins. Intrinsically Disordered Proteins. 1: e24848. PMID 28516011 DOI: 10.4161/idp.24848 |
0.491 |
|
| 2013 |
Theillet FX, Kalmar L, Tompa P, Han KH, Selenko P, Dunker AK, Daughdrill GW, Uversky VN. The alphabet of intrinsic disorder: I. Act like a Pro: On the abundance and roles of proline residues in intrinsically disordered proteins. Intrinsically Disordered Proteins. 1: e24360. PMID 28516008 DOI: 10.4161/idp.24360 |
0.477 |
|
| 2013 |
Dunker AK, Babu MM, Barbar E, Blackledge M, Bondos SE, Dosztányi Z, Dyson HJ, Forman-Kay J, Fuxreiter M, Gsponer J, Han KH, Jones DT, Longhi S, Metallo SJ, Nishikawa K, et al. What's in a name? Why these proteins are intrinsically disordered: Why these proteins are intrinsically disordered. Intrinsically Disordered Proteins. 1: e24157. PMID 28516007 DOI: 10.4161/idp.24157 |
0.488 |
|
| 2013 |
Kallenbach J, Hsu WL, Dunker AK, Alterovitz G. Order-disorder interface characterization reveals critical factors for disease and drug targets. Amia Joint Summits On Translational Science Proceedings Amia Summit On Translational Science. 2013: 101. PMID 24303310 |
0.68 |
|
| 2013 |
Goh GK, Dunker AK, Uversky V. Prediction of Intrinsic Disorder in MERS-CoV/HCoV-EMC Supports a High Oral-Fecal Transmission. Plos Currents. 5. PMID 24270586 DOI: 10.1371/Currents.Outbreaks.22254B58675Cdebc256Dbe3C5Aa6498B |
0.448 |
|
| 2013 |
Dunker AK. Another disordered chameleon: the Micro-Exon Gene 14 protein from Schistosomiasis. Biophysical Journal. 104: 2326-8. PMID 23746503 DOI: 10.1016/J.Bpj.2013.04.018 |
0.514 |
|
| 2013 |
Gough J, Dunker AK. Sequences and topology: disorder, modularity, and post/pre translation modification. Current Opinion in Structural Biology. 23: 417-9. PMID 23721748 DOI: 10.1016/J.Sbi.2013.05.001 |
0.482 |
|
| 2013 |
Buljan M, Chalancon G, Dunker AK, Bateman A, Balaji S, Fuxreiter M, Babu MM. Alternative splicing of intrinsically disordered regions and rewiring of protein interactions. Current Opinion in Structural Biology. 23: 443-50. PMID 23706950 DOI: 10.1016/J.Sbi.2013.03.006 |
0.554 |
|
| 2013 |
Xue B, Romero PR, Noutsou M, Maurice MM, Rüdiger SG, William AM, Mizianty MJ, Kurgan L, Uversky VN, Dunker AK. Stochastic machines as a colocalization mechanism for scaffold protein function. Febs Letters. 587: 1587-91. PMID 23603389 DOI: 10.1016/J.Febslet.2013.04.006 |
0.384 |
|
| 2013 |
Uversky VN, Dunker AK. The case for intrinsically disordered proteins playing contributory roles in molecular recognition without a stable 3D structure. F1000 Biology Reports. 5: 1. PMID 23361308 DOI: 10.3410/B5-1 |
0.437 |
|
| 2013 |
Xue B, Brown CJ, Dunker AK, Uversky VN. Intrinsically disordered regions of p53 family are highly diversified in evolution. Biochimica Et Biophysica Acta. 1834: 725-38. PMID 23352836 DOI: 10.1016/J.Bbapap.2013.01.012 |
0.487 |
|
| 2013 |
Hsu WL, Oldfield CJ, Xue B, Meng J, Huang F, Romero P, Uversky VN, Dunker AK. Exploring the binding diversity of intrinsically disordered proteins involved in one-to-many binding. Protein Science : a Publication of the Protein Society. 22: 258-73. PMID 23233352 DOI: 10.1002/Pro.2207 |
0.689 |
|
| 2013 |
Oldfield CJ, Xue B, Van YY, Ulrich EL, Markley JL, Dunker AK, Uversky VN. Utilization of protein intrinsic disorder knowledge in structural proteomics. Biochimica Et Biophysica Acta. 1834: 487-98. PMID 23232152 DOI: 10.1016/J.Bbapap.2012.12.003 |
0.566 |
|
| 2013 |
Oates ME, Romero P, Ishida T, Ghalwash M, Mizianty MJ, Xue B, Dosztányi Z, Uversky VN, Obradovic Z, Kurgan L, Dunker AK, Gough J. D²P²: database of disordered protein predictions. Nucleic Acids Research. 41: D508-16. PMID 23203878 DOI: 10.1093/Nar/Gks1226 |
0.548 |
|
| 2013 |
Ota M, Koike R, Amemiya T, Tenno T, Romero PR, Hiroaki H, Dunker AK, Fukuchi S. An assignment of intrinsically disordered regions of proteins based on NMR structures. Journal of Structural Biology. 181: 29-36. PMID 23142703 DOI: 10.1016/J.Jsb.2012.10.017 |
0.525 |
|
| 2012 |
Goh GK, Dunker AK, Uversky VN. Understanding Viral Transmission Behavior via Protein Intrinsic Disorder Prediction: Coronaviruses. Journal of Pathogens. 2012: 738590. PMID 23097708 DOI: 10.1155/2012/738590 |
0.38 |
|
| 2012 |
Santner AA, Croy CH, Vasanwala FH, Uversky VN, Van YY, Dunker AK. Sweeping away protein aggregation with entropic bristles: intrinsically disordered protein fusions enhance soluble expression. Biochemistry. 51: 7250-62. PMID 22924672 DOI: 10.1021/Bi300653M |
0.548 |
|
| 2012 |
Xue B, Dunker AK, Uversky VN. Orderly order in protein intrinsic disorder distribution: disorder in 3500 proteomes from viruses and the three domains of life. Journal of Biomolecular Structure & Dynamics. 30: 137-49. PMID 22702725 DOI: 10.1080/07391102.2012.675145 |
0.545 |
|
| 2012 |
Disfani FM, Hsu WL, Mizianty MJ, Oldfield CJ, Xue B, Dunker AK, Uversky VN, Kurgan L. MoRFpred, a computational tool for sequence-based prediction and characterization of short disorder-to-order transitioning binding regions in proteins. Bioinformatics (Oxford, England). 28: i75-83. PMID 22689782 DOI: 10.1093/Bioinformatics/Bts209 |
0.675 |
|
| 2012 |
Srinivasan M, Dunker AK. Proline rich motifs as drug targets in immune mediated disorders. International Journal of Peptides. 2012: 634769. PMID 22666276 DOI: 10.1155/2012/634769 |
0.382 |
|
| 2012 |
Johnson DE, Xue B, Sickmeier MD, Meng J, Cortese MS, Oldfield CJ, Le Gall T, Dunker AK, Uversky VN. High-throughput characterization of intrinsic disorder in proteins from the Protein Structure Initiative. Journal of Structural Biology. 180: 201-15. PMID 22651963 DOI: 10.1016/J.Jsb.2012.05.013 |
0.577 |
|
| 2012 |
Xue B, Dunker AK, Uversky VN. The roles of intrinsic disorder in orchestrating the Wnt-pathway. Journal of Biomolecular Structure & Dynamics. 29: 843-61. PMID 22292947 DOI: 10.1080/073911012010525024 |
0.498 |
|
| 2012 |
Liu J, Li S, Dunker AK, Uversky VN. Molecular profiling: an essential technology enabling personalized medicine in breast cancer. Current Drug Targets. 13: 541-54. PMID 22250651 DOI: 10.2174/138945012799499767 |
0.436 |
|
| 2012 |
Uversky VN, Dunker AK. Multiparametric analysis of intrinsically disordered proteins: looking at intrinsic disorder through compound eyes. Analytical Chemistry. 84: 2096-104. PMID 22242801 DOI: 10.1021/Ac203096K |
0.565 |
|
| 2012 |
Zhang T, Faraggi E, Xue B, Dunker AK, Uversky VN, Zhou Y. SPINE-D: accurate prediction of short and long disordered regions by a single neural-network based method. Journal of Biomolecular Structure & Dynamics. 29: 799-813. PMID 22208280 DOI: 10.1080/073911012010525022 |
0.518 |
|
| 2012 |
Huang F, Oldfield C, Meng J, Hsu WL, Xue B, Uversky VN, Romero P, Dunker AK. Subclassifying disordered proteins by the CH-CDF plot method. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 128-39. PMID 22174269 DOI: 10.7490/F1000Research.1089774.1 |
0.662 |
|
| 2012 |
Hsu WL, Oldfield C, Meng J, Huang F, Xue B, Uversky VN, Romero P, Dunker AK. Intrinsic protein disorder and protein-protein interactions. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 116-27. PMID 22174268 DOI: 10.7490/F1000Research.1090909.1 |
0.706 |
|
| 2012 |
Ghalwash MF, Dunker AK, Obradovi? Z. Uncertainty analysis in protein disorder prediction. Molecular Biosystems. 8: 381-91. PMID 22101336 DOI: 10.1039/C1Mb05373F |
0.533 |
|
| 2012 |
Rumi-Masante J, Rusinga FI, Lester TE, Dunlap TB, Williams TD, Dunker AK, Weis DD, Creamer TP. Structural basis for activation of calcineurin by calmodulin. Journal of Molecular Biology. 415: 307-17. PMID 22100452 DOI: 10.1016/J.Jmb.2011.11.008 |
0.399 |
|
| 2012 |
Xue B, Oldfield CJ, Van YY, Dunker AK, Uversky VN. Protein intrinsic disorder and induced pluripotent stem cells. Molecular Biosystems. 8: 134-50. PMID 21761058 DOI: 10.1039/C1Mb05163F |
0.441 |
|
| 2012 |
Chen J, Cheng J, Dunker AK. Intrinsically disordered proteins: Analysis, prediction, simulation, and biology 17th Pacific Symposium On Biocomputing, Psb 2012. 67-69. |
0.426 |
|
| 2011 |
Hu Y, Liu Y, Jung J, Dunker AK, Wang Y. Changes in predicted protein disorder tendency may contribute to disease risk. Bmc Genomics. 12: S2. PMID 22369681 DOI: 10.1186/1471-2164-12-S5-S2 |
0.553 |
|
| 2011 |
Xue B, Soeria-Atmadja D, Gustafsson MG, Hammerling U, Dunker AK, Uversky VN. Abundance and functional roles of intrinsic disorder in allergenic proteins and allergen representative peptides. Proteins. 79: 2595-606. PMID 21732419 DOI: 10.1002/Prot.23077 |
0.574 |
|
| 2011 |
Sun X, Xue B, Jones WT, Rikkerink E, Dunker AK, Uversky VN. A functionally required unfoldome from the plant kingdom: intrinsically disordered N-terminal domains of GRAS proteins are involved in molecular recognition during plant development. Plant Molecular Biology. 77: 205-23. PMID 21732203 DOI: 10.1007/S11103-011-9803-Z |
0.524 |
|
| 2011 |
Mizianty MJ, Zhang T, Xue B, Zhou Y, Dunker AK, Uversky VN, Kurgan L. In-silico prediction of disorder content using hybrid sequence representation. Bmc Bioinformatics. 12: 245. PMID 21682902 DOI: 10.1186/1471-2105-12-245 |
0.564 |
|
| 2011 |
Dunker AK, Gough J. Sequences and topology: intrinsic disorder in the evolving universe of protein structure. Current Opinion in Structural Biology. 21: 379-81. PMID 21530236 DOI: 10.1016/J.Sbi.2011.04.002 |
0.552 |
|
| 2011 |
Dunker AK, Kriwacki RW. The orderly chaos of proteins. Scientific American. 304: 68-73. PMID 21495485 DOI: 10.1038/Scientificamerican0411-68 |
0.494 |
|
| 2011 |
Brown CJ, Johnson AK, Dunker AK, Daughdrill GW. Evolution and disorder. Current Opinion in Structural Biology. 21: 441-6. PMID 21482101 DOI: 10.1016/J.Sbi.2011.02.005 |
0.585 |
|
| 2011 |
Dixon SE, Bhatti MM, Uversky VN, Dunker AK, Sullivan WJ. Regions of intrinsic disorder help identify a novel nuclear localization signal in Toxoplasma gondii histone acetyltransferase TgGCN5-B. Molecular and Biochemical Parasitology. 175: 192-5. PMID 21055425 DOI: 10.1016/J.Molbiopara.2010.10.009 |
0.486 |
|
| 2011 |
Williams R, Dunker AK, Smith B, Natale D. An OBO Foundry ontology for intrinsically disordered proteins F1000research. 2. DOI: 10.7490/F1000Research.835.1 |
0.576 |
|
| 2011 |
Xue B, Dunker AK, Uversky VN. Prediction of intrinsic disorder: From general to specific F1000research. 2. DOI: 10.7490/F1000Research.764.1 |
0.459 |
|
| 2011 |
Hsu W, Oldfield CJ, Xue B, Wagle M, Meng J, Huang F, Morales C, Uversky VN, Dunker AK. Exploring the binding diversity of intrinsically disordered proteins F1000research. 2. DOI: 10.7490/F1000Research.2156.1 |
0.692 |
|
| 2011 |
Williams RW, Xue B, Uversky V, Dunker AK. Natural Selection of 100% Intrinsically Disordered Biologically Functional Disease Related Pfam Protein Domains Biophysical Journal. 100: 62a. DOI: 10.1016/J.Bpj.2010.12.537 |
0.501 |
|
| 2011 |
Santner AA, Croy CH, Vasanwala F, Dunker AK. Expression of Soluble Recombinant Proteins via Translational Fusion to Novel IDPS Biophysical Journal. 100. DOI: 10.1016/J.Bpj.2010.12.521 |
0.463 |
|
| 2011 |
Brown CJ, Daughdrill GW, Dunker AK. Intrinsically Disordered Proteins Evolve Differently from Ordered (Structured) Proteins Biophysical Journal. 100: 519a. DOI: 10.1016/J.Bpj.2010.12.3034 |
0.601 |
|
| 2011 |
Creamer TP, Rumi-Masante J, Lester TE, Dunlap TM, Rusinga F, Dunker AK, Weis DD. Activation of Calcineurin Involves a Folding Upon Binding Event Biophysical Journal. 100: 5a. DOI: 10.1016/J.Bpj.2010.12.236 |
0.41 |
|
| 2011 |
Goh GM, Xue B, Dunker AK, Uversky VN. Structural Disorder in Proteins from Influenza Virus Flexible Viruses: Structural Disorder in Viral Proteins. 169-200. DOI: 10.1002/9781118135570.ch7 |
0.341 |
|
| 2011 |
Goh GKM, Xue B, Dunker AK, Uversky VN. Structural Disorder in Matrix Proteins of HIV-Related Viruses Flexible Viruses: Structural Disorder in Viral Proteins. 143-167. DOI: 10.1002/9781118135570.ch6 |
0.313 |
|
| 2010 |
Xue B, Dunker AK, Uversky VN. Retro-MoRFs: identifying protein binding sites by normal and reverse alignment and intrinsic disorder prediction. International Journal of Molecular Sciences. 11: 3725-47. PMID 21152297 DOI: 10.3390/Ijms11103725 |
0.574 |
|
| 2010 |
Dunker AK, Uversky VN. Drugs for 'protein clouds': targeting intrinsically disordered transcription factors. Current Opinion in Pharmacology. 10: 782-8. PMID 20889377 DOI: 10.1016/J.Coph.2010.09.005 |
0.522 |
|
| 2010 |
Gao J, Thelen JJ, Dunker AK, Xu D. Musite, a tool for global prediction of general and kinase-specific phosphorylation sites. Molecular & Cellular Proteomics : McP. 9: 2586-600. PMID 20702892 DOI: 10.1074/Mcp.M110.001388 |
0.317 |
|
| 2010 |
Xue B, Williams RW, Oldfield CJ, Dunker AK, Uversky VN. Archaic chaos: intrinsically disordered proteins in Archaea. Bmc Systems Biology. 4: S1. PMID 20522251 DOI: 10.1186/1752-0509-4-S1-S1 |
0.573 |
|
| 2010 |
Xue B, Hsu WL, Lee JH, Lu H, Dunker AK, Uversky VN. SPA: Short peptide analyzer of intrinsic disorder status of short peptides. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. 15: 635-46. PMID 20497238 DOI: 10.1111/J.1365-2443.2010.01407.X |
0.586 |
|
| 2010 |
Xue B, Williams RW, Oldfield CJ, Goh GK, Dunker AK, Uversky VN. Viral disorder or disordered viruses: do viral proteins possess unique features? Protein and Peptide Letters. 17: 932-51. PMID 20450483 DOI: 10.2174/092986610791498984 |
0.58 |
|
| 2010 |
Uversky VN, Dunker AK. Understanding protein non-folding. Biochimica Et Biophysica Acta. 1804: 1231-64. PMID 20117254 DOI: 10.1016/J.Bbapap.2010.01.017 |
0.586 |
|
| 2010 |
Sun X, Jones WT, Harvey D, Edwards PJ, Pascal SM, Kirk C, Considine T, Sheerin DJ, Rakonjac J, Oldfield CJ, Xue B, Dunker AK, Uversky VN. N-terminal domains of DELLA proteins are intrinsically unstructured in the absence of interaction with GID1/gibberellic acid receptors. The Journal of Biological Chemistry. 285: 11557-71. PMID 20103592 DOI: 10.1074/Jbc.M109.027011 |
0.401 |
|
| 2010 |
Xue B, Dunbrack RL, Williams RW, Dunker AK, Uversky VN. PONDR-FIT: a meta-predictor of intrinsically disordered amino acids. Biochimica Et Biophysica Acta. 1804: 996-1010. PMID 20100603 DOI: 10.1016/J.Bbapap.2010.01.011 |
0.566 |
|
| 2010 |
Dunker AK. Intrinsic Disorder, Scaffolds, and Stochastic Machines Biophysical Journal. 98: 652a. DOI: 10.1016/J.Bpj.2009.12.3573 |
0.435 |
|
| 2010 |
Uversky VN, Dunker AK, Xue B, Oldfield CJ. Searching for the Native Molten Globules Biophysical Journal. 98: 256a. DOI: 10.1016/J.Bpj.2009.12.1393 |
0.581 |
|
| 2010 |
Xue B, Oldfield CJ, Hsu W, Uversky V, Dunker A. Development of New Predictors of Intrinsically Disordered Proteins and Residues Biophysical Journal. 98: 256a. DOI: 10.1016/J.Bpj.2009.12.1391 |
0.66 |
|
| 2010 |
Uversky VN, Cortese MS, Tompa P, Csizmok V, Dunker AK. Large-Scale Identification of Intrinsically Disordered Proteins Instrumental Analysis of Intrinsically Disordered Proteins: Assessing Structure and Conformation. 671-693. DOI: 10.1002/9780470602614.ch23 |
0.412 |
|
| 2009 |
Midic U, Oldfield CJ, Dunker AK, Obradovic Z, Uversky VN. Unfoldomics of human genetic diseases: illustrative examples of ordered and intrinsically disordered members of the human diseasome. Protein and Peptide Letters. 16: 1533-47. PMID 20001916 DOI: 10.2174/092986609789839377 |
0.422 |
|
| 2009 |
Rancurel C, Khosravi M, Dunker AK, Romero PR, Karlin D. Overlapping genes produce proteins with unusual sequence properties and offer insight into de novo protein creation. Journal of Virology. 83: 10719-36. PMID 19640978 DOI: 10.1128/Jvi.00595-09 |
0.527 |
|
| 2009 |
He B, Wang K, Liu Y, Xue B, Uversky VN, Dunker AK. Predicting intrinsic disorder in proteins: an overview. Cell Research. 19: 929-49. PMID 19597536 DOI: 10.1038/Cr.2009.87 |
0.57 |
|
| 2009 |
Uversky VN, Oldfield CJ, Midic U, Xie H, Xue B, Vucetic S, Iakoucheva LM, Obradovic Z, Dunker AK. Unfoldomics of human diseases: linking protein intrinsic disorder with diseases. Bmc Genomics. 10: S7. PMID 19594884 DOI: 10.1186/1471-2164-10-S1-S7 |
0.42 |
|
| 2009 |
Midic U, Oldfield CJ, Dunker AK, Obradovic Z, Uversky VN. Protein disorder in the human diseasome: unfoldomics of human genetic diseases. Bmc Genomics. 10: S12. PMID 19594871 DOI: 10.1186/1471-2164-10-S1-S12 |
0.535 |
|
| 2009 |
Xue B, Li L, Meroueh SO, Uversky VN, Dunker AK. Analysis of structured and intrinsically disordered regions of transmembrane proteins. Molecular Biosystems. 5: 1688-1702. PMID 19585006 DOI: 10.1039/B905913J |
0.56 |
|
| 2009 |
Goh GK, Dunker AK, Uversky VN. Protein intrinsic disorder and influenza virulence: the 1918 H1N1 and H5N1 viruses. Virology Journal. 6: 69. PMID 19493338 DOI: 10.1186/1743-422X-6-69 |
0.306 |
|
| 2009 |
Xue B, Oldfield CJ, Dunker AK, Uversky VN. CDF it all: consensus prediction of intrinsically disordered proteins based on various cumulative distribution functions. Febs Letters. 583: 1469-74. PMID 19351533 DOI: 10.1016/J.Febslet.2009.03.070 |
0.578 |
|
| 2009 |
Tompa P, Fuxreiter M, Oldfield CJ, Simon I, Dunker AK, Uversky VN. Close encounters of the third kind: disordered domains and the interactions of proteins. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 31: 328-35. PMID 19260013 DOI: 10.1002/Bies.200800151 |
0.543 |
|
| 2009 |
Liang S, Li L, Hsu WL, Pilcher MN, Uversky V, Zhou Y, Dunker AK, Meroueh SO. Exploring the molecular design of protein interaction sites with molecular dynamics simulations and free energy calculations. Biochemistry. 48: 399-414. PMID 19113835 DOI: 10.1021/Bi8017043 |
0.623 |
|
| 2009 |
Midic U, Dunker AK, Obradovic Z. Protein sequence alignment and structural disorder: A substitution matrix for an extended alphabet Proceedings of the Kdd-09 Workshop On Statistical and Relational Learning in Bioinformatics, Strebio '09. 27-31. DOI: 10.1145/1562090.1562096 |
0.415 |
|
| 2009 |
Romero PR, Rancurel C, Khosravi M, Dunker AK, Karlin D. Intrinsic Disorder and the Evolution of Viral Overlapping Genes Biophysical Journal. 96. DOI: 10.1016/J.Bpj.2008.12.1923 |
0.518 |
|
| 2009 |
Johnson DE, Sickmeier MD, Meng J, Le Gall T, Uversky V, Dunker AK. High-throughput Characterization of Intrinsically Disordered Proteins from the Protein Structure Initiative Biophysical Journal. 96: 220a. DOI: 10.1016/J.Bpj.2008.12.1919 |
0.579 |
|
| 2009 |
Oldfield CJ, Uversky VN, Dunker AK. Bioinformatic Analysis of the Role of Intrinsic Disorder in Multiple Specificity Biophysical Journal. 96: 220a. DOI: 10.1016/J.Bpj.2008.12.1918 |
0.578 |
|
| 2009 |
Dunker A, Chan W, Karn S, Uversky V, Brooks D, Oldfield C, White J, Perumal N, Romero P. Protein Folding as a Transition Step from Ancient to the Modern Life Forms Biophysical Journal. 96: 318a. DOI: 10.1016/J.Bpj.2008.12.1591 |
0.38 |
|
| 2008 |
Tóth-Petróczy A, Oldfield CJ, Simon I, Takagi Y, Dunker AK, Uversky VN, Fuxreiter M. Malleable machines in transcription regulation: the mediator complex. Plos Computational Biology. 4: e1000243. PMID 19096501 DOI: 10.1371/Journal.Pcbi.1000243 |
0.461 |
|
| 2008 |
Campen A, Williams RM, Brown CJ, Meng J, Uversky VN, Dunker AK. TOP-IDP-scale: a new amino acid scale measuring propensity for intrinsic disorder. Protein and Peptide Letters. 15: 956-63. PMID 18991772 DOI: 10.2174/092986608785849164 |
0.436 |
|
| 2008 |
Dunker AK, Silman I, Uversky VN, Sussman JL. Function and structure of inherently disordered proteins Current Opinion in Structural Biology. 18: 756-764. PMID 18952168 DOI: 10.1016/J.Sbi.2008.10.002 |
0.522 |
|
| 2008 |
Goh GK, Dunker AK, Uversky VN. A comparative analysis of viral matrix proteins using disorder predictors. Virology Journal. 5: 126. PMID 18947403 DOI: 10.1186/1743-422X-5-126 |
0.474 |
|
| 2008 |
Goh GK, Dunker AK, Uversky VN. Protein intrinsic disorder toolbox for comparative analysis of viral proteins. Bmc Genomics. 9: S4. PMID 18831795 DOI: 10.1186/1471-2164-9-S2-S4 |
0.547 |
|
| 2008 |
Ren S, Uversky VN, Chen Z, Dunker AK, Obradovic Z. Short Linear Motifs recognized by SH2, SH3 and Ser/Thr Kinase domains are conserved in disordered protein regions. Bmc Genomics. 9: S26. PMID 18831792 DOI: 10.1186/1471-2164-9-S2-S26 |
0.551 |
|
| 2008 |
Dunker AK, Oldfield CJ, Meng J, Romero P, Yang JY, Chen JW, Vacic V, Obradovic Z, Uversky VN. The unfoldomics decade: an update on intrinsically disordered proteins. Bmc Genomics. 9: S1. PMID 18831774 DOI: 10.1186/1471-2164-9-S2-S1 |
0.624 |
|
| 2008 |
Liu J, Campen A, Huang S, Peng SB, Ye X, Palakal M, Dunker AK, Xia Y, Li S. Identification of a gene signature in cell cycle pathway for breast cancer prognosis using gene expression profiling data. Bmc Medical Genomics. 1: 39. PMID 18786252 DOI: 10.1186/1755-8794-1-39 |
0.444 |
|
| 2008 |
Boxem M, Maliga Z, Klitgord N, Li N, Lemmens I, Mana M, de Lichtervelde L, Mul JD, van de Peut D, Devos M, Simonis N, Yildirim MA, Cokol M, Kao HL, de Smet AS, ... ... Dunker AK, et al. A protein domain-based interactome network for C. elegans early embryogenesis. Cell. 134: 534-45. PMID 18692475 DOI: 10.1016/J.Cell.2008.07.009 |
0.411 |
|
| 2008 |
Cortese MS, Uversky VN, Dunker AK. Intrinsic disorder in scaffold proteins: getting more from less. Progress in Biophysics and Molecular Biology. 98: 85-106. PMID 18619997 DOI: 10.1016/J.Pbiomolbio.2008.05.007 |
0.511 |
|
| 2008 |
Uversky VN, Oldfield CJ, Dunker AK. Intrinsically disordered proteins in human diseases: introducing the D2 concept. Annual Review of Biophysics. 37: 215-46. PMID 18573080 DOI: 10.1146/Annurev.Biophys.37.032807.125924 |
0.546 |
|
| 2008 |
Rantalainen KI, Uversky VN, Permi P, Kalkkinen N, Dunker AK, Mäkinen K. Potato virus A genome-linked protein VPg is an intrinsically disordered molten globule-like protein with a hydrophobic core. Virology. 377: 280-8. PMID 18533220 DOI: 10.1016/J.Virol.2008.04.025 |
0.547 |
|
| 2008 |
Paliy O, Gargac SM, Cheng Y, Uversky VN, Dunker AK. Protein disorder is positively correlated with gene expression in Escherichia coli. Journal of Proteome Research. 7: 2234-45. PMID 18465893 DOI: 10.1021/Pr800055R |
0.475 |
|
| 2008 |
Yang JY, Yang MQ, Dunker AK, Deng Y, Huang X. Investigation of transmembrane proteins using a computational approach. Bmc Genomics. 9: S7. PMID 18366620 DOI: 10.1186/1471-2164-9-S1-S7 |
0.433 |
|
| 2008 |
Oldfield CJ, Meng J, Yang JY, Yang MQ, Uversky VN, Dunker AK. Flexible nets: disorder and induced fit in the associations of p53 and 14-3-3 with their partners. Bmc Genomics. 9: S1. PMID 18366598 DOI: 10.1186/1471-2164-9-S1-S1 |
0.547 |
|
| 2008 |
Mohan A, Sullivan WJ, Radivojac P, Dunker AK, Uversky VN. Intrinsic disorder in pathogenic and non-pathogenic microbes: discovering and analyzing the unfoldomes of early-branching eukaryotes. Molecular Biosystems. 4: 328-40. PMID 18354786 DOI: 10.1039/B719168E |
0.557 |
|
| 2008 |
Dunker AK, Uversky VN. Signal transduction via unstructured protein conduits. Nature Chemical Biology. 4: 229-30. PMID 18347590 DOI: 10.1038/Nchembio0408-229 |
0.391 |
|
| 2008 |
Zhang W, Dunker AK, Zhou Y. Assessing secondary structure assignment of protein structures by using pairwise sequence-alignment benchmarks. Proteins. 71: 61-7. PMID 17932927 DOI: 10.1002/Prot.21654 |
0.363 |
|
| 2008 |
Toth-Petroczy A, Meszaros B, Simon I, Dunker AK, Uversky VN, Fuxreiter M. Assessing Conservation of Disordered Regions in Proteins The Open Proteomics Journal. 1: 46-53. DOI: 10.2174/1875039700801010046 |
0.551 |
|
| 2008 |
Daughdrill GW, Pielak GJ, Uversky VN, Cortese MS, Dunker AK. Natively Disordered Proteins Protein Folding Handbook. 1: 275-357. DOI: 10.1002/9783527619498.Ch41 |
0.595 |
|
| 2007 |
Uversky VN, Radivojac P, Iakoucheva LM, Obradovic Z, Dunker AK. Prediction of intrinsic disorder and its use in functional proteomics. Methods in Molecular Biology (Clifton, N.J.). 408: 69-92. PMID 18314578 DOI: 10.1007/978-1-59745-547-3_5 |
0.585 |
|
| 2007 |
Li L, Uversky VN, Dunker AK, Meroueh SO. A computational investigation of allostery in the catabolite activator protein. Journal of the American Chemical Society. 129: 15668-76. PMID 18041838 DOI: 10.1021/Ja076046A |
0.354 |
|
| 2007 |
Cheng Y, Oldfield CJ, Meng J, Romero P, Uversky VN, Dunker AK. Mining alpha-helix-forming molecular recognition features with cross species sequence alignments. Biochemistry. 46: 13468-77. PMID 17973494 DOI: 10.1021/Bi7012273 |
0.458 |
|
| 2007 |
Dunker AK. Another window into disordered protein function. Structure (London, England : 1993). 15: 1026-8. PMID 17850741 DOI: 10.1016/J.Str.2007.08.001 |
0.534 |
|
| 2007 |
Hurley TD, Yang J, Zhang L, Goodwin KD, Zou Q, Cortese M, Dunker AK, DePaoli-Roach AA. Structural basis for regulation of protein phosphatase 1 by inhibitor-2. The Journal of Biological Chemistry. 282: 28874-83. PMID 17636256 DOI: 10.1074/Jbc.M703472200 |
0.419 |
|
| 2007 |
Vacic V, Oldfield CJ, Mohan A, Radivojac P, Cortese MS, Uversky VN, Dunker AK. Characterization of molecular recognition features, MoRFs, and their binding partners. Journal of Proteome Research. 6: 2351-66. PMID 17488107 DOI: 10.1021/Pr0701411 |
0.489 |
|
| 2007 |
Xie H, Vucetic S, Iakoucheva LM, Oldfield CJ, Dunker AK, Obradovic Z, Uversky VN. Functional anthology of intrinsic disorder. 3. Ligands, post-translational modifications, and diseases associated with intrinsically disordered proteins. Journal of Proteome Research. 6: 1917-32. PMID 17391016 DOI: 10.1021/Pr060394E |
0.582 |
|
| 2007 |
Vucetic S, Xie H, Iakoucheva LM, Oldfield CJ, Dunker AK, Obradovic Z, Uversky VN. Functional anthology of intrinsic disorder. 2. Cellular components, domains, technical terms, developmental processes, and coding sequence diversities correlated with long disordered regions. Journal of Proteome Research. 6: 1899-916. PMID 17391015 DOI: 10.1021/Pr060393M |
0.584 |
|
| 2007 |
Xie H, Vucetic S, Iakoucheva LM, Oldfield CJ, Dunker AK, Uversky VN, Obradovic Z. Functional anthology of intrinsic disorder. 1. Biological processes and functions of proteins with long disordered regions. Journal of Proteome Research. 6: 1882-98. PMID 17391014 DOI: 10.1021/Pr060392U |
0.577 |
|
| 2007 |
Le Gall T, Romero PR, Cortese MS, Uversky VN, Dunker AK. Intrinsic disorder in the Protein Data Bank. Journal of Biomolecular Structure & Dynamics. 24: 325-42. PMID 17206849 DOI: 10.1080/07391102.2007.10507123 |
0.559 |
|
| 2007 |
Radivojac P, Iakoucheva LM, Oldfield CJ, Obradovic Z, Uversky VN, Dunker AK. Intrinsic disorder and functional proteomics. Biophysical Journal. 92: 1439-56. PMID 17158572 DOI: 10.1529/Biophysj.106.094045 |
0.565 |
|
| 2007 |
Sickmeier M, Hamilton JA, LeGall T, Vacic V, Cortese MS, Tantos A, Szabo B, Tompa P, Chen J, Uversky VN, Obradovic Z, Dunker AK. DisProt: the Database of Disordered Proteins. Nucleic Acids Research. 35: D786-93. PMID 17145717 DOI: 10.1093/Nar/Gkl893 |
0.6 |
|
| 2007 |
Dunker AK, Oldfield CJ, Meng J, Romero P, Yang JY, Obradovic Z, Uversky VN. Intrinsically disordered proteins: An update Proceedings of the 7th Ieee International Conference On Bioinformatics and Bioengineering, Bibe. 49-58. DOI: 10.1109/BIBE.2007.4375544 |
0.504 |
|
| 2006 |
Dosztányi Z, Chen J, Dunker AK, Simon I, Tompa P. Disorder and sequence repeats in hub proteins and their implications for network evolution. Journal of Proteome Research. 5: 2985-95. PMID 17081050 DOI: 10.1021/Pr060171O |
0.505 |
|
| 2006 |
Cheng Y, LeGall T, Oldfield CJ, Dunker AK, Uversky VN. Abundance of intrinsic disorder in protein associated with cardiovascular disease. Biochemistry. 45: 10448-60. PMID 16939197 DOI: 10.1021/Bi060981D |
0.592 |
|
| 2006 |
Mohan A, Oldfield CJ, Radivojac P, Vacic V, Cortese MS, Dunker AK, Uversky VN. Analysis of molecular recognition features (MoRFs). Journal of Molecular Biology. 362: 1043-59. PMID 16935303 DOI: 10.1016/J.Jmb.2006.07.087 |
0.593 |
|
| 2006 |
Uversky VN, Roman A, Oldfield CJ, Dunker AK. Protein intrinsic disorder and human papillomaviruses: increased amount of disorder in E6 and E7 oncoproteins from high risk HPVs. Journal of Proteome Research. 5: 1829-42. PMID 16889404 DOI: 10.1021/Pr0602388 |
0.358 |
|
| 2006 |
Cheng Y, LeGall T, Oldfield CJ, Mueller JP, Van YY, Romero P, Cortese MS, Uversky VN, Dunker AK. Rational drug design via intrinsically disordered protein. Trends in Biotechnology. 24: 435-42. PMID 16876893 DOI: 10.1016/J.Tibtech.2006.07.005 |
0.477 |
|
| 2006 |
Liu J, Perumal NB, Oldfield CJ, Su EW, Uversky VN, Dunker AK. Intrinsic disorder in transcription factors. Biochemistry. 45: 6873-88. PMID 16734424 DOI: 10.1021/Bi0602718 |
0.552 |
|
| 2006 |
Romero PR, Zaidi S, Fang YY, Uversky VN, Radivojac P, Oldfield CJ, Cortese MS, Sickmeier M, LeGall T, Obradovic Z, Dunker AK. Alternative splicing in concert with protein intrinsic disorder enables increased functional diversity in multicellular organisms. Proceedings of the National Academy of Sciences of the United States of America. 103: 8390-5. PMID 16717195 DOI: 10.1073/Pnas.0507916103 |
0.604 |
|
| 2006 |
Peng K, Radivojac P, Vucetic S, Dunker AK, Obradovic Z. Length-dependent prediction of protein intrinsic disorder. Bmc Bioinformatics. 7: 208. PMID 16618368 DOI: 10.1186/1471-2105-7-208 |
0.569 |
|
| 2006 |
Chen JW, Romero P, Uversky VN, Dunker AK. Conservation of intrinsic disorder in protein domains and families: II. Functions of conserved disorder Journal of Proteome Research. 5: 888-898. PMID 16602696 DOI: 10.1021/Pr060049P |
0.582 |
|
| 2006 |
Chen JW, Romero P, Uversky VN, Dunker AK. Conservation of intrinsic disorder in protein domains and families: I. A database of conserved predicted disordered regions Journal of Proteome Research. 5: 879-887. PMID 16602695 DOI: 10.1021/Pr060048X |
0.557 |
|
| 2006 |
Radivojac P, Vucetic S, O'Connor TR, Uversky VN, Obradovic Z, Dunker AK. Calmodulin signaling: analysis and prediction of a disorder-dependent molecular recognition. Proteins. 63: 398-410. PMID 16493654 DOI: 10.1002/Prot.20873 |
0.485 |
|
| 2005 |
Dunker AK, Cortese MS, Romero P, Iakoucheva LM, Uversky VN. Flexible nets. The roles of intrinsic disorder in protein interaction networks. The Febs Journal. 272: 5129-48. PMID 16218947 DOI: 10.1111/J.1742-4658.2005.04948.X |
0.579 |
|
| 2005 |
Cortese MS, Baird JP, Uversky VN, Dunker AK. Uncovering the unfoldome: enriching cell extracts for unstructured proteins by acid treatment. Journal of Proteome Research. 4: 1610-8. PMID 16212413 DOI: 10.1021/Pr050119C |
0.321 |
|
| 2005 |
Obradovic Z, Peng K, Vucetic S, Radivojac P, Dunker AK. Exploiting heterogeneous sequence properties improves prediction of protein disorder. Proteins. 61: 176-82. PMID 16187360 DOI: 10.1002/Prot.20735 |
0.527 |
|
| 2005 |
Oldfield CJ, Cheng Y, Cortese MS, Romero P, Uversky VN, Dunker AK. Coupled folding and binding with alpha-helix-forming molecular recognition elements. Biochemistry. 44: 12454-70. PMID 16156658 DOI: 10.1021/Bi050736E |
0.467 |
|
| 2005 |
Uversky VN, Oldfield CJ, Dunker AK. Showing your ID: Intrinsic disorder as an ID for recognition, regulation and cell signaling Journal of Molecular Recognition. 18: 343-384. PMID 16094605 DOI: 10.1002/Jmr.747 |
0.502 |
|
| 2005 |
Oldfield CJ, Ulrich EL, Cheng Y, Dunker AK, Markley JL. Addressing the intrinsic disorder bottleneck in structural proteomics. Proteins. 59: 444-53. PMID 15789434 DOI: 10.1002/Prot.20446 |
0.554 |
|
| 2005 |
Peng K, Vucetic S, Radivojac P, Brown CJ, Dunker AK, Obradovic Z. Optimizing long intrinsic disorder predictors with protein evolutionary information. Journal of Bioinformatics and Computational Biology. 3: 35-60. PMID 15751111 DOI: 10.1142/S0219720005000886 |
0.583 |
|
| 2005 |
Oldfield CJ, Cheng Y, Cortese MS, Brown CJ, Uversky VN, Dunker AK. Comparing and combining predictors of mostly disordered proteins. Biochemistry. 44: 1989-2000. PMID 15697224 DOI: 10.1021/Bi047993O |
0.594 |
|
| 2005 |
Vucetic S, Obradovic Z, Vacic V, Radivojac P, Peng K, Iakoucheva LM, Cortese MS, Lawson JD, Brown CJ, Sikes JG, Newton CD, Dunker AK. DisProt: a database of protein disorder. Bioinformatics (Oxford, England). 21: 137-40. PMID 15310560 DOI: 10.1093/Bioinformatics/Bth476 |
0.599 |
|
| 2004 |
Romero P, Obradovic Z, Dunker AK. Natively disordered proteins: functions and predictions. Applied Bioinformatics. 3: 105-13. PMID 15693736 DOI: 10.2165/00822942-200403020-00005 |
0.596 |
|
| 2004 |
Bracken C, Iakoucheva LM, Romero PR, Dunker AK. Combining prediction, computation and experiment for the characterization of protein disorder Current Opinion in Structural Biology. 14: 570-576. PMID 15465317 DOI: 10.1016/J.Sbi.2004.08.003 |
0.522 |
|
| 2004 |
Iakoucheva LM, Radivojac P, Brown CJ, O'Connor TR, Sikes JG, Obradovic Z, Dunker AK. The importance of intrinsic disorder for protein phosphorylation. Nucleic Acids Research. 32: 1037-49. PMID 14960716 DOI: 10.1093/Nar/Gkh253 |
0.488 |
|
| 2004 |
Radivojac P, Obradovic Z, Smith DK, Zhu G, Vucetic S, Brown CJ, Lawson JD, Dunker AK. Protein flexibility and intrinsic disorder. Protein Science : a Publication of the Protein Society. 13: 71-80. PMID 14691223 DOI: 10.1110/ps.03128904 |
0.365 |
|
| 2003 |
Iakoucheva LM, Dunker AK. Order, disorder, and flexibility: Prediction from protein sequence Structure. 11: 1316-1317. PMID 14604521 DOI: 10.1016/J.Str.2003.10.009 |
0.561 |
|
| 2003 |
Obradovic Z, Peng K, Vucetic S, Radivojac P, Brown CJ, Dunker AK. Predicting intrinsic disorder from amino acid sequence. Proteins. 53: 566-72. PMID 14579347 DOI: 10.1002/Prot.10532 |
0.509 |
|
| 2003 |
Vucetic S, Brown CJ, Dunker AK, Obradovic Z. Flavors of protein disorder. Proteins. 52: 573-84. PMID 12910457 DOI: 10.1002/Prot.10437 |
0.602 |
|
| 2003 |
Smith DK, Radivojac P, Obradovic Z, Dunker AK, Zhu G. Improved amino acid flexibility parameters. Protein Science : a Publication of the Protein Society. 12: 1060-72. PMID 12717028 DOI: 10.1110/Ps.0236203 |
0.35 |
|
| 2003 |
Radivojac P, Obradovi? Z, Brown CJ, Dunker AK. Prediction of boundaries between intrinsically ordered and disordered protein regions. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 216-27. PMID 12603030 |
0.342 |
|
| 2002 |
Dunker AK, Brown CJ, Lawson CJD, Iakoucheva-Sebat LM, Vucetic S, Obradovic Z. The Protein Trinity: Structure/Function Relationships That Include Intrinsic Disorder. Thescientificworldjournal. 2: 49-50. PMID 29973799 DOI: 10.1100/Tsw.2002.25 |
0.558 |
|
| 2002 |
Dunker AK, Brown CJ, Obradovic Z. Identification and functions of usefully disordered proteins. Advances in Protein Chemistry. 62: 25-49. PMID 12418100 DOI: 10.1016/S0065-3233(02)62004-2 |
0.58 |
|
| 2002 |
Iakoucheva LM, Brown CJ, Lawson JD, Obradovi? Z, Dunker AK. Intrinsic disorder in cell-signaling and cancer-associated proteins. Journal of Molecular Biology. 323: 573-84. PMID 12381310 DOI: 10.1016/S0022-2836(02)00969-5 |
0.578 |
|
| 2002 |
Brown CJ, Takayama S, Campen AM, Vise P, Marshall TW, Oldfield CJ, Williams CJ, Dunker AK. Evolutionary rate heterogeneity in proteins with long disordered regions. Journal of Molecular Evolution. 55: 104-10. PMID 12165847 DOI: 10.1007/S00239-001-2309-6 |
0.591 |
|
| 2002 |
Dunker AK, Brown CJ, Lawson JD, Iakoucheva LM, Obradovi? Z. Intrinsic disorder and protein function. Biochemistry. 41: 6573-82. PMID 12022860 DOI: 10.1021/Bi012159+ |
0.566 |
|
| 2002 |
Radivojac P, Obradovic Z, Brown CJ, Dunker AK. Improving sequence alignments for intrinsically disordered proteins. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 589-600. PMID 11928510 |
0.439 |
|
| 2002 |
O'Connor TR, Lawson JD, Dunker AK. The benefit of intrinsic disorder information in neural network prediction of calmodulin binding targets Proceedings of the International Joint Conference On Neural Networks. 1: 296-299. |
0.332 |
|
| 2001 |
Bailey RW, Dunker AK, Brown CJ, Garner EC, Griswold MD. Clusterin, a binding protein with a molten globule-like region. Biochemistry. 40: 11828-40. PMID 11570883 DOI: 10.1021/Bi010135X |
0.527 |
|
| 2001 |
Dunker AK, Obradovic Z. The protein trinity--linking function and disorder. Nature Biotechnology. 19: 805-6. PMID 11533628 DOI: 10.1038/Nbt0901-805 |
0.562 |
|
| 2001 |
Iakoucheva LM, Kimzey AL, Masselon CD, Smith RD, Dunker AK, Ackerman EJ. Aberrant mobility phenomena of the DNA repair protein XPA. Protein Science : a Publication of the Protein Society. 10: 1353-62. PMID 11420437 DOI: 10.1110/Ps.Ps.40101 |
0.388 |
|
| 2001 |
Dunker AK, Lawson JD, Brown CJ, Williams RM, Romero P, Oh JS, Oldfield CJ, Campen AM, Ratliff CM, Hipps KW, Ausio J, Nissen MS, Reeves R, Kang C, Kissinger CR, et al. Intrinsically disordered protein. Journal of Molecular Graphics & Modelling. 19: 26-59. PMID 11381529 DOI: 10.1016/S1093-3263(00)00138-8 |
0.528 |
|
| 2001 |
Iakoucheva LM, Kimzey AL, Masselon CD, Bruce JE, Garner EC, Brown CJ, Dunker AK, Smith RD, Ackerman EJ. Identification of intrinsic order and disorder in the DNA repair protein XPA. Protein Science : a Publication of the Protein Society. 10: 560-71. PMID 11344324 DOI: 10.1110/Ps.29401 |
0.51 |
|
| 2001 |
Williams RM, Obradovi Z, Mathura V, Braun W, Garner EC, Young J, Takayama S, Brown CJ, Dunker AK. The protein non-folding problem: amino acid determinants of intrinsic order and disorder. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 89-100. PMID 11262981 |
0.423 |
|
| 2001 |
Romero P, Obradovic Z, Li X, Garner EC, Brown CJ, Dunker AK. Sequence complexity of disordered protein. Proteins. 42: 38-48. PMID 11093259 DOI: 10.1002/1097-0134(20010101)42:1<38::Aid-Prot50>3.0.Co;2-3 |
0.563 |
|
| 2001 |
Vucetic S, Radivojac P, Obradovic Z, Brown CJ, Dunker AK. Methods for improving protein disorder prediction Proceedings of the International Joint Conference On Neural Networks. 4: 2718-2723. |
0.436 |
|
| 2000 |
Li X, Obradovic Z, Brown CJ, Garner EC, Dunker AK. Comparing predictors of disordered protein. Genome Informatics. Workshop On Genome Informatics. 11: 172-84. PMID 11700598 |
0.378 |
|
| 2000 |
Dunker AK, Obradovic Z, Romero P, Garner EC, Brown CJ. Intrinsic protein disorder in complete genomes. Genome Informatics. Workshop On Genome Informatics. 11: 161-71. PMID 11700597 |
0.492 |
|
| 2000 |
Takayama S, Marshal T, Oldfield C, Campen A, Dunker AK, Brown CJ. Identifying Intrinsic Disorder by Sequence Homology Genome Informatics. 11: 346-347. DOI: 10.11234/Gi1990.11.346 |
0.556 |
|
| 2000 |
Romero P, Obradovic Z, Dunker AK. Intelligent data analysis for protein disorder prediction Artificial Intelligence Review. 14: 447-484. DOI: 10.1023/A:1006678623815 |
0.589 |
|
| 1999 |
Garner E, Romero P, Dunker AK, Brown C, Obradovic Z. Predicting Binding Regions within Disordered Proteins. Genome Informatics. Workshop On Genome Informatics. 10: 41-50. PMID 11072341 |
0.521 |
|
| 1999 |
Li X, Romero P, Rani M, Dunker AK, Obradovic Z. Predicting Protein Disorder for N-, C-, and Internal Regions. Genome Informatics. Workshop On Genome Informatics. 10: 30-40. PMID 11072340 DOI: 10.11234/Gi1990.10.30 |
0.417 |
|
| 1999 |
Romero P, Obradovic Z, Dunker AK. Folding minimal sequences: the lower bound for sequence complexity of globular proteins. Febs Letters. 462: 363-7. PMID 10622726 DOI: 10.1016/S0014-5793(99)01557-4 |
0.313 |
|
| 1998 |
Garner E, Cannon P, Romero P, Obradovic Z, Dunker AK. Predicting Disordered Regions from Amino Acid Sequence: Common Themes Despite Differing Structural Characterization. Genome Informatics. Workshop On Genome Informatics. 9: 201-213. PMID 11072336 DOI: 10.11234/Gi1990.9.201 |
0.308 |
|
| 1998 |
Dunker AK, Garner E, Guilliot S, Romero P, Albrecht K, Hart J, Obradovic Z, Kissinger C, Villafranca JE. Protein disorder and the evolution of molecular recognition: theory, predictions and observations. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 473-84. PMID 9697205 |
0.416 |
|
| 1998 |
Romero P, Obradovic Z, Kissinger CR, Villafranca JE, Garner E, Guilliot S, Dunker AK. Thousands of proteins likely to have long disordered regions. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 437-48. PMID 9697202 |
0.533 |
|
| 1998 |
Rani M, Romero P, Obradovic Z, Dunker AK. Annotation of PDB with respect to "Disordered Regions" in Proteins Genome Informatics. 9: 240-241. DOI: 10.11234/Gi1990.9.240 |
0.576 |
|
| 1997 |
Romero P, Obradovi Z, Kissinger C, Villafranca JE, Dunker AK. Identifying disordered regions in proteins from amino acid sequence Ieee International Conference On Neural Networks - Conference Proceedings. 1: 90-95. |
0.396 |
|
| 1993 |
Miller RT, Douthart RJ, Dunker AK. Learning an Objective Alphabet of Amino Acid Conformations in Protein1 Techniques in Protein Chemistry. 541-548. DOI: 10.1016/B978-0-12-058757-5.50064-0 |
0.312 |
|
| 1986 |
Dunker AK, John WE, Rammon R, Farmer B, Johns SJ. Slightly Bizarre Protein Chemistry: Urea-Formaldehyde Resin from a Biochemical Perspective The Journal of Adhesion. 19: 153-176. DOI: 10.1080/00218468608071219 |
0.339 |
|
| 1984 |
Williams RW, Dunker AK, Peticolas WL. Raman spectroscopy and deuterium exchange of the filamentous phage fd Biochimica Et Biophysica Acta (Bba)/Protein Structure and Molecular. 791: 131-144. PMID 6509061 DOI: 10.1016/0167-4838(84)90003-7 |
0.328 |
|
| 1982 |
Dunker AK. A proton motive force transducer and its role in proton pumps, proton engines, tobacco mosaic virus assembly and hemoglobin allosterism Journal of Theoretical Biology. 97: 95-127. PMID 6290796 DOI: 10.1016/0022-5193(82)90281-8 |
0.358 |
|
| 1981 |
Williams RW, Dunker AK. Determination of the secondary structure of proteins from the amide I band of the laser Raman spectrum Journal of Molecular Biology. 152: 783-813. PMID 7334522 DOI: 10.1016/0022-2836(81)90127-3 |
0.394 |
|
| 1981 |
Burres N, Dunker AK. Membrane transport through alpha-heltical bundles. IV. Preliminary model building investigation of helix-helix interactions. Journal of Theoretical Biology. 87: 723-36. PMID 7253674 DOI: 10.1016/0022-5193(80)90113-7 |
0.302 |
|
| 1980 |
Williams RW, Cutrera T, Dunker AK, Peticolas WL. The estimation of protein secondary structure by laser raman spectroscopy from the amide III′ intensity distribution Febs Letters. 115: 306-308. PMID 6249643 DOI: 10.1016/0014-5793(80)81193-8 |
0.362 |
|
| 1979 |
Dunker AK, Williams RW, Gaber BP, Peticolas WL. Laser raman studies of lipid disordering by the B-protein of fd phage Bba - Biomembranes. 553: 351-357. PMID 444523 DOI: 10.1016/0005-2736(79)90238-4 |
0.36 |
|
| 1969 |
Rueckert RR, Dunker AK, Stoltzfus CM. The structure of mouse-Elberfeld virus: a model. Proceedings of the National Academy of Sciences of the United States of America. 62: 912-9. PMID 5257012 DOI: 10.1073/Pnas.62.3.912 |
0.31 |
|
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