| Year |
Citation |
Score |
| 2024 |
Rossier V, Train C, Nevers Y, Robinson-Rechavi M, Dessimoz C. Matreex: Compact and Interactive Visualization for Scalable Studies of Large Gene Families. Genome Biology and Evolution. 16. PMID 38742690 DOI: 10.1093/gbe/evae100 |
0.33 |
|
| 2022 |
Brasó-Vives M, Marlétaz F, Echchiki A, Mantica F, Acemel RD, Gómez-Skarmeta JL, Hartasánchez DA, Le Targa L, Pontarotti P, Tena JJ, Maeso I, Escriva H, Irimia M, Robinson-Rechavi M. Parallel evolution of amphioxus and vertebrate small-scale gene duplications. Genome Biology. 23: 243. PMID 36401278 DOI: 10.1186/s13059-022-02808-6 |
0.35 |
|
| 2022 |
Laloum D, Robinson-Rechavi M. Rhythmicity is linked to expression cost at the protein level but to expression precision at the mRNA level. Plos Computational Biology. 18: e1010399. PMID 36095022 DOI: 10.1371/journal.pcbi.1010399 |
0.302 |
|
| 2022 |
Djordjevic J, Dumas Z, Robinson-Rechavi M, Schwander T, Parker DJ. Dynamics of sex-biased gene expression during development in the stick insect Timema californicum. Heredity. PMID 35581477 DOI: 10.1038/s41437-022-00536-y |
0.32 |
|
| 2022 |
Wen M, Pan Q, Jouanno E, Montfort J, Zahm M, Cabau C, Klopp C, Iampietro C, Roques C, Bouchez O, Castinel A, Donnadieu C, Parrinello H, Poncet C, Belmonte E, ... ... Robinson-Rechavi M, et al. An ancient truncated duplication of the anti-Mullerian hormone receptor type 2 gene is a potential conserved master sex determinant in the Pangasiidae catfish family. Molecular Ecology Resources. PMID 35429227 DOI: 10.1111/1755-0998.13620 |
0.345 |
|
| 2022 |
Zancolli G, Reijnders M, Waterhouse RM, Robinson-Rechavi M. Convergent evolution of venom gland transcriptomes across Metazoa. Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 34983844 DOI: 10.1073/pnas.2111392119 |
0.323 |
|
| 2021 |
Liu J, Viales RR, Khoueiry P, Reddington JP, Girardot C, Furlong E, Robinson-Rechavi M. The hourglass model of evolutionary conservation during embryogenesis extends to developmental enhancers with signatures of positive selection. Genome Research. PMID 34266978 DOI: 10.1101/gr.275212.121 |
0.374 |
|
| 2020 |
Bastian FB, Roux J, Niknejad A, Comte A, Fonseca Costa SS, de Farias TM, Moretti S, Parmentier G, de Laval VR, Rosikiewicz M, Wollbrett J, Echchiki A, Escoriza A, Gharib WH, Gonzales-Porta M, ... ... Robinson-Rechavi M, et al. The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals. Nucleic Acids Research. PMID 33037820 DOI: 10.1093/nar/gkaa793 |
0.607 |
|
| 2020 |
Liu J, Frochaux M, Gardeux V, Deplancke B, Robinson-Rechavi M. Inter-embryo gene expression variability recapitulates the hourglass pattern of evo-devo. Bmc Biology. 18: 129. PMID 32950053 DOI: 10.1186/S12915-020-00842-Z |
0.472 |
|
| 2020 |
Chen Q, Britto R, Erill I, Jeffery CJ, Liberzon A, Magrane M, Onami JI, Robinson-Rechavi M, Sponarova J, Zobel J, Verspoor K. Quality Matters: Biocuration Experts on the Impact of Duplication and Other Data Quality Issues in Biological Databases. Genomics, Proteomics & Bioinformatics. PMID 32652120 DOI: 10.1016/J.Gpb.2018.11.006 |
0.406 |
|
| 2020 |
Fonseca Costa SS, Robinson-Rechavi M, Ripperger JA. Single-cell transcriptomics allows novel insights into aging and circadian processes. Briefings in Functional Genomics. PMID 32633783 DOI: 10.1093/Bfgp/Elaa014 |
0.333 |
|
| 2020 |
Selmoni OM, Maitre D, Roux J, Wilkins LGE, Marques da Cunha L, Vermeirssen ELM, Knörr S, Robinson-Rechavi M, Wedekind C. Correction to: Sex-specific changes in gene expression in response to estrogen pollution around the onset of sex differentiation in grayling (Salmonidae). Bmc Genomics. 21: 371. PMID 32434468 DOI: 10.1186/s12864-020-06782-w |
0.548 |
|
| 2020 |
Laloum D, Robinson-Rechavi M. Methods detecting rhythmic gene expression are biologically relevant only for strong signal. Plos Computational Biology. 16: e1007666. PMID 32182235 DOI: 10.1371/Journal.Pcbi.1007666 |
0.509 |
|
| 2019 |
Li H, Rukina D, David FPA, Li TY, Oh CM, Gao AW, Katsyuba E, Bou Sleiman M, Komljenovic A, Huang Q, Williams RW, Robinson-Rechavi M, Schoonjans K, Morgenthaler S, Auwerx J. Identifying gene function and module connections by the integration of multispecies expression compendia. Genome Research. PMID 31754022 DOI: 10.1101/Gr.251983.119 |
0.462 |
|
| 2019 |
Parker DJ, Bast J, Jalvingh K, Dumas Z, Robinson-Rechavi M, Schwander T. Sex-biased gene expression is repeatedly masculinized in asexual females. Nature Communications. 10: 4638. PMID 31604947 DOI: 10.1038/S41467-019-12659-8 |
0.406 |
|
| 2019 |
Selmoni OM, Maitre D, Roux J, Wilkins LGE, Marques da Cunha L, Vermeirssen ELM, Knörr S, Robinson-Rechavi M, Wedekind C. Sex-specific changes in gene expression in response to estrogen pollution around the onset of sex differentiation in grayling (Salmonidae). Bmc Genomics. 20: 583. PMID 31307399 DOI: 10.1186/S12864-019-5955-Z |
0.604 |
|
| 2019 |
Komljenovic A, Li H, Sorrentino V, Kutalik Z, Auwerx J, Robinson-Rechavi M. Cross-species functional modules link proteostasis to human normal aging. Plos Computational Biology. 15: e1007162. PMID 31269015 DOI: 10.1371/Journal.Pcbi.1007162 |
0.338 |
|
| 2019 |
Seppey M, Ioannidis P, Emerson BC, Pitteloud C, Robinson-Rechavi M, Roux J, Escalona HE, McKenna DD, Misof B, Shin S, Zhou X, Waterhouse RM, Alvarez N. Genomic signatures accompanying the dietary shift to phytophagy in polyphagan beetles. Genome Biology. 20: 98. PMID 31101123 DOI: 10.1186/S13059-019-1704-5 |
0.596 |
|
| 2019 |
Davydov II, Salamin N, Robinson-Rechavi M. Large-Scale Comparative Analysis of Codon Models Accounting for Protein and Nucleotide Selection. Molecular Biology and Evolution. PMID 30847475 DOI: 10.1093/Molbev/Msz048 |
0.398 |
|
| 2018 |
Parker DJ, Bast J, Jalvingh K, Dumas Z, Robinson-Rechavi M, Schwander T. Repeated evolution of asexuality involves convergent gene expression changes. Molecular Biology and Evolution. PMID 30445505 DOI: 10.1093/Molbev/Msy217 |
0.451 |
|
| 2018 |
Liu J, Robinson-Rechavi M. Adaptive evolution of animal proteins over development: support for the Darwin selection opportunity hypothesis of Evo-Devo. Molecular Biology and Evolution. PMID 30184095 DOI: 10.1093/Molbev/Msy175 |
0.504 |
|
| 2018 |
Jiu J, Robinson-Rechavi M. Developmental constraints on genome evolution in four bilaterian model species. Genome Biology and Evolution. PMID 30137380 DOI: 10.1093/Gbe/Evy177 |
0.49 |
|
| 2017 |
Maitre D, Selmoni OM, Uppal A, Marques da Cunha L, Wilkins LGE, Roux J, Mobley KB, Castro I, Knörr S, Robinson-Rechavi M, Wedekind C. Sex differentiation in grayling (Salmonidae) goes through an all-male stage and is delayed in genetic males who instead grow faster. Scientific Reports. 7: 15024. PMID 29101375 DOI: 10.1038/S41598-017-14905-9 |
0.529 |
|
| 2017 |
Roux J, Liu J, Robinson-Rechavi M. Selective Constraints on Coding Sequences of Nervous System Genes Are a Major Determinant of Duplicate Gene Retention in Vertebrates. Molecular Biology and Evolution. PMID 28981708 DOI: 10.1093/Molbev/Msx199 |
0.7 |
|
| 2017 |
McDaid AF, Joshi PK, Porcu E, Komljenovic A, Li H, Sorrentino V, Litovchenko M, Bevers RPJ, Rüeger S, Reymond A, Bochud M, Deplancke B, Williams RW, Robinson-Rechavi M, Paccaud F, et al. Bayesian association scan reveals loci associated with human lifespan and linked biomarkers. Nature Communications. 8: 15842. PMID 28748955 DOI: 10.1038/Ncomms15842 |
0.38 |
|
| 2017 |
Laurent S, Salamin N, Robinson-Rechavi M. No evidence for the radiation time lag model after whole genome duplications in Teleostei. Plos One. 12: e0176384. PMID 28426792 DOI: 10.1371/Journal.Pone.0176384 |
0.345 |
|
| 2017 |
Daub JT, Moretti S, Davydov II, Excoffier L, Robinson-Rechavi M. Detection of Pathways Affected by Positive Selection in Primate Lineages Ancestral to Humans. Molecular Biology and Evolution. 34: 1391-1402. PMID 28333345 DOI: 10.1093/Molbev/Msx083 |
0.79 |
|
| 2017 |
Davydov II, Robinson-Rechavi M, Salamin N. State aggregation for fast likelihood computations in molecular evolution. Bioinformatics (Oxford, England). 33: 354-362. PMID 28172542 DOI: 10.1093/Bioinformatics/Btw632 |
0.301 |
|
| 2017 |
Komljenovic A, Roux J, Wollbrett J, Team B, Bastian FB, Robinson-Rechavi M. Accessing and manipulating curated and annotated gene expression data in R with BgeeDB F1000research. 6. DOI: 10.7490/F1000Research.1114851.1 |
0.603 |
|
| 2017 |
Echchiki A, Roux J, Robinson-Rechavi M. Using new long reads technologies to improve the study of alternative splicing F1000research. 6. DOI: 10.7490/F1000Research.1114848.1 |
0.476 |
|
| 2017 |
Bastian FB, Echchiki A, Komljenovic A, Moretti S, Niknejad A, Laval VRd, Roux J, Wollbrett J, Robinson-Rechavi M, Team B. Bgee database: creating knowledge from gene expression F1000research. 6. DOI: 10.7490/F1000Research.1114845.1 |
0.625 |
|
| 2017 |
Team B, Robinson-Rechavi M. Bgee database: creating knowledge from gene expression in any animal species F1000research. 6. DOI: 10.7490/F1000Research.1114461.1 |
0.434 |
|
| 2016 |
Komljenovic A, Roux J, Wollbrett J, Robinson-Rechavi M, Bastian FB. BgeeDB, an R package for retrieval of curated expression datasets and for gene list expression localization enrichment tests. F1000research. 5: 2748. PMID 30467516 DOI: 10.12688/F1000Research.9973.1 |
0.663 |
|
| 2016 |
Kryuchkova-Mostacci N, Robinson-Rechavi M. Tissue-Specificity of Gene Expression Diverges Slowly between Orthologs, and Rapidly between Paralogs. Plos Computational Biology. 12: e1005274. PMID 28030541 DOI: 10.1371/Journal.Pcbi.1005274 |
0.399 |
|
| 2016 |
Morales M, Sentchilo V, Bertelli C, Komljenovic A, Kryuchkova-Mostacci N, Bourdilloud A, Linke B, Goesmann A, Harshman K, Segers F, Delapierre F, Fiorucci D, Seppey M, Trofimenco E, Berra P, ... ... Robinson-Rechavi M, et al. The Genome of the Toluene-Degrading Pseudomonas veronii Strain 1YdBTEX2 and Its Differential Gene Expression in Contaminated Sand. Plos One. 11: e0165850. PMID 27812150 DOI: 10.1371/Journal.Pone.0165850 |
0.367 |
|
| 2016 |
Kryuchkova-Mostacci N, Robinson-Rechavi M. A benchmark of gene expression tissue-specificity metrics. Briefings in Bioinformatics. PMID 26891983 DOI: 10.1093/Bib/Bbw008 |
0.439 |
|
| 2016 |
Robinson-Rechavi M, Bastian F. Workshop slides presenting Gene enrichment of anatomical structures using TopAnat F1000research. 5. DOI: 10.7490/F1000Research.1112405.1 |
0.423 |
|
| 2015 |
Laurent S, Robinson-Rechavi M, Salamin N. Detecting patterns of species diversification in the presence of both rate shifts and mass extinctions. Bmc Evolutionary Biology. 15: 157. PMID 26260305 DOI: 10.1186/S12862-015-0432-Z |
0.316 |
|
| 2015 |
Kryuchkova-Mostacci N, Robinson-Rechavi M. Tissue-Specific Evolution of Protein Coding Genes in Human and Mouse. Plos One. 10: e0131673. PMID 26121354 DOI: 10.1371/Journal.Pone.0131673 |
0.474 |
|
| 2015 |
Daub JT, Dupanloup I, Robinson-Rechavi M, Excoffier L. Inference of Evolutionary Forces Acting on Human Biological Pathways. Genome Biology and Evolution. 7: 1546-58. PMID 25971280 DOI: 10.1093/Gbe/Evv083 |
0.796 |
|
| 2015 |
Roux J, Rosikiewicz M, Robinson-Rechavi M. What to compare and how: Comparative transcriptomics for Evo-Devo. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 324: 372-82. PMID 25864439 DOI: 10.1002/Jez.B.22618 |
0.626 |
|
| 2015 |
Bertelli C, Aeby S, Chassot B, Clulow J, Hilfiker O, Rappo S, Ritzmann S, Schumacher P, Terrettaz C, Benaglio P, Falquet L, Farinelli L, Gharib WH, Goesmann A, Harshman K, ... ... Robinson-Rechavi M, et al. Sequencing and characterizing the genome of Estrella lausannensis as an undergraduate project: training students and biological insights. Frontiers in Microbiology. 6: 101. PMID 25745418 DOI: 10.3389/Fmicb.2015.00101 |
0.339 |
|
| 2014 |
Haendel MA, Balhoff JP, Bastian FB, Blackburn DC, Blake JA, Bradford Y, Comte A, Dahdul WM, Dececchi TA, Druzinsky RE, Hayamizu TF, Ibrahim N, Lewis SE, Mabee PM, Niknejad A, ... Robinson-Rechavi M, et al. Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon. Journal of Biomedical Semantics. 5: 21. PMID 25009735 DOI: 10.1186/2041-1480-5-21 |
0.406 |
|
| 2014 |
Roux J, Privman E, Moretti S, Daub JT, Robinson-Rechavi M, Keller L. Patterns of positive selection in seven ant genomes. Molecular Biology and Evolution. 31: 1661-85. PMID 24782441 DOI: 10.1093/Molbev/Msu141 |
0.788 |
|
| 2014 |
Moretti S, Laurenczy B, Gharib WH, Castella B, Kuzniar A, Schabauer H, Studer RA, Valle M, Salamin N, Stockinger H, Robinson-Rechavi M. Selectome update: quality control and computational improvements to a database of positive selection. Nucleic Acids Research. 42: D917-21. PMID 24225318 DOI: 10.1093/Nar/Gkt1065 |
0.417 |
|
| 2014 |
Kryuchkova N, Robinson-Rechavi M. Determinants of protein evolutionary rates in light of ENCODE functional genomics Bmc Bioinformatics. 15: 1-2. DOI: 10.1186/1471-2105-15-S3-A9 |
0.486 |
|
| 2013 |
Gaudet P, Munoz-Torres M, Robinson-Rechavi M, Attwood T, Bateman A, Cherry JM, Kania R, O'Donovan C, Yamasaki C. DATABASE, The Journal of Biological Databases and Curation, is now the official journal of the International Society for Biocuration. Database : the Journal of Biological Databases and Curation. 2013: bat077. PMID 24319113 DOI: 10.1093/Database/Bat077 |
0.306 |
|
| 2013 |
Piasecka B, Lichocki P, Moretti S, Bergmann S, Robinson-Rechavi M. The hourglass and the early conservation models--co-existing patterns of developmental constraints in vertebrates. Plos Genetics. 9: e1003476. PMID 23637639 DOI: 10.1371/Journal.Pgen.1003476 |
0.534 |
|
| 2013 |
Daub JT, Hofer T, Cutivet E, Dupanloup I, Quintana-Murci L, Robinson-Rechavi M, Excoffier L. Evidence for polygenic adaptation to pathogens in the human genome. Molecular Biology and Evolution. 30: 1544-58. PMID 23625889 DOI: 10.1093/Molbev/Mst080 |
0.791 |
|
| 2013 |
Gharib WH, Robinson-Rechavi M. The branch-site test of positive selection is surprisingly robust but lacks power under synonymous substitution saturation and variation in GC. Molecular Biology and Evolution. 30: 1675-86. PMID 23558341 DOI: 10.1093/Molbev/Mst062 |
0.361 |
|
| 2013 |
Rosikiewicz M, Comte A, Niknejad A, Robinson-Rechavi M, Bastian FB. Uncovering hidden duplicated content in public transcriptomics data. Database : the Journal of Biological Databases and Curation. 2013: bat010. PMID 23487185 DOI: 10.1093/Database/Bat010 |
0.34 |
|
| 2013 |
Sentchilo V, Mayer AP, Guy L, Miyazaki R, Green Tringe S, Barry K, Malfatti S, Goessmann A, Robinson-Rechavi M, van der Meer JR. Community-wide plasmid gene mobilization and selection. The Isme Journal. 7: 1173-86. PMID 23407308 DOI: 10.1038/Ismej.2013.13 |
0.39 |
|
| 2013 |
Kryuchkova N, Robinson-Rechavi M. Determinants of protein evolutionary rates in the light of ENCODE functional genomics F1000research. 4. DOI: 10.7490/F1000Research.1094165.1 |
0.316 |
|
| 2013 |
Blatter M, Gerritsen VB, Palagi P, Bougueleret L, Lisacek F, Robinson-Rechavi M, Xenarios I. ChromosomeWalk, a virtual exhibition introducing the human genome and bioinformatics F1000research. 4. DOI: 10.7490/F1000Research.1094072.1 |
0.322 |
|
| 2013 |
Rosikiewicz M, Robinson-Rechavi M. Generation of expression calls for RNA-seq data Embnet.Journal. 19: 77. DOI: 10.14806/Ej.19.A.670 |
0.452 |
|
| 2012 |
Moretti S, Murri R, Maffioletti S, Kuzniar A, Castella B, Salamin N, Robinson-Rechavi M, Stockinger H. gcodeml: a Grid-enabled tool for detecting positive selection in biological evolution. Studies in Health Technology and Informatics. 175: 59-68. PMID 22941988 DOI: 10.3233/978-1-61499-054-3-59 |
0.352 |
|
| 2012 |
Altenhoff AM, Studer RA, Robinson-Rechavi M, Dessimoz C. Resolving the ortholog conjecture: orthologs tend to be weakly, but significantly, more similar in function than paralogs. Plos Computational Biology. 8: e1002514. PMID 22615551 DOI: 10.1371/Journal.Pcbi.1002514 |
0.352 |
|
| 2012 |
Piasecka B, Robinson-Rechavi M, Bergmann S. Correcting for the bias due to expression specificity improves the estimation of constrained evolution of expression between mouse and human. Bioinformatics (Oxford, England). 28: 1865-72. PMID 22576178 DOI: 10.1093/Bioinformatics/Bts266 |
0.476 |
|
| 2012 |
Piasecka B, Kutalik Z, Roux J, Bergmann S, Robinson-Rechavi M. Comparative modular analysis of gene expression in vertebrate organs. Bmc Genomics. 13: 124. PMID 22458817 DOI: 10.1186/1471-2164-13-124 |
0.638 |
|
| 2012 |
Roux J, Gonzàlez-Porta M, Robinson-Rechavi M. Comparative analysis of human and mouse expression data illuminates tissue-specific evolutionary patterns of miRNAs. Nucleic Acids Research. 40: 5890-900. PMID 22457063 DOI: 10.1093/Nar/Gks279 |
0.534 |
|
| 2012 |
Louis A, Roest Crollius H, Robinson-Rechavi M. How much does the amphioxus genome represent the ancestor of chordates? Briefings in Functional Genomics. 11: 89-95. PMID 22373648 DOI: 10.1093/Bfgp/Els003 |
0.445 |
|
| 2012 |
Niknejad A, Comte A, Parmentier G, Roux J, Bastian FB, Robinson-Rechavi M. vHOG, a multispecies vertebrate ontology of homologous organs groups. Bioinformatics (Oxford, England). 28: 1017-20. PMID 22285560 DOI: 10.1093/Bioinformatics/Bts048 |
0.574 |
|
| 2011 |
Jagannathan V, Robinson-Rechavi M. Meta-analysis of estrogen response in MCF-7 distinguishes early target genes involved in signaling and cell proliferation from later target genes involved in cell cycle and DNA repair. Bmc Systems Biology. 5: 138. PMID 21878096 DOI: 10.1186/1752-0509-5-138 |
0.443 |
|
| 2011 |
Boeckmann B, Robinson-Rechavi M, Xenarios I, Dessimoz C. Conceptual framework and pilot study to benchmark phylogenomic databases based on reference gene trees. Briefings in Bioinformatics. 12: 423-35. PMID 21737420 DOI: 10.1093/Bib/Bbr034 |
0.418 |
|
| 2011 |
Gharib WH, Robinson-Rechavi M. When orthologs diverge between human and mouse. Briefings in Bioinformatics. 12: 436-41. PMID 21677033 DOI: 10.1093/Bib/Bbr031 |
0.367 |
|
| 2011 |
Roux J, Robinson-Rechavi M. Age-dependent gain of alternative splice forms and biased duplication explain the relation between splicing and duplication. Genome Research. 21: 357-63. PMID 21173032 DOI: 10.1101/Gr.113803.110 |
0.663 |
|
| 2011 |
Jagannathan V, Robinson-Rechavi M. The challenge of modeling nuclear receptor regulatory networks in mammalian cells. Molecular and Cellular Endocrinology. 334: 91-7. PMID 20600584 DOI: 10.1016/J.Mce.2010.06.012 |
0.344 |
|
| 2010 |
Studer RA, Robinson-Rechavi M. Large-scale analysis of orthologs and paralogs under covarion-like and constant-but-different models of amino acid evolution. Molecular Biology and Evolution. 27: 2618-27. PMID 20551039 DOI: 10.1093/Molbev/Msq149 |
0.364 |
|
| 2010 |
Parmentier G, Bastian FB, Robinson-Rechavi M. Homolonto: generating homology relationships by pairwise alignment of ontologies and application to vertebrate anatomy. Bioinformatics (Oxford, England). 26: 1766-71. PMID 20519284 DOI: 10.1093/Bioinformatics/Btq283 |
0.399 |
|
| 2010 |
Comte A, Roux J, Robinson-Rechavi M. Molecular signaling in zebrafish development and the vertebrate phylotypic period. Evolution & Development. 12: 144-56. PMID 20433455 DOI: 10.1111/J.1525-142X.2010.00400.X |
0.596 |
|
| 2010 |
Tzertzinis G, Egaña AL, Palli SR, Robinson-Rechavi M, Gissendanner CR, Liu C, Unnasch TR, Maina CV. Molecular evidence for a functional ecdysone signaling system in Brugia malayi. Plos Neglected Tropical Diseases. 4: e625. PMID 20231890 DOI: 10.1371/Journal.Pntd.0000625 |
0.318 |
|
| 2010 |
Roux J, Robinson-Rechavi M. An ontology to clarify homology-related concepts. Trends in Genetics : Tig. 26: 99-102. PMID 20116127 DOI: 10.1016/J.Tig.2009.12.012 |
0.524 |
|
| 2010 |
Bastian F, Comte A, Gharib W, Porta MG, Jarosz Y, Laurenczy B, Moretti S, Niknejad A, Parmentier G, Piasecka B, Rosikiewicz M, Roux J, Sanjeev K, Robinson-Rechavi M. Bgee: a database for the study of gene expression evolution F1000research. 1. DOI: 10.7490/F1000Research.1092219.1 |
0.664 |
|
| 2009 |
Cruz F, Roux J, Robinson-Rechavi M. The expansion of amino-acid repeats is not associated to adaptive evolution in mammalian genes. Bmc Genomics. 10: 619. PMID 20021652 DOI: 10.1186/1471-2164-10-619 |
0.611 |
|
| 2009 |
Studer RA, Robinson-Rechavi M. Evidence for an episodic model of protein sequence evolution. Biochemical Society Transactions. 37: 783-6. PMID 19614594 DOI: 10.1042/Bst0370783 |
0.386 |
|
| 2009 |
Studer RA, Robinson-Rechavi M. How confident can we be that orthologs are similar, but paralogs differ? Trends in Genetics : Tig. 25: 210-6. PMID 19368988 DOI: 10.1016/J.Tig.2009.03.004 |
0.463 |
|
| 2009 |
Iwema T, Chaumot A, Studer RA, Robinson-Rechavi M, Billas IM, Moras D, Laudet V, Bonneton F. Structural and evolutionary innovation of the heterodimerization interface between USP and the ecdysone receptor ECR in insects. Molecular Biology and Evolution. 26: 753-68. PMID 19126866 DOI: 10.1093/Molbev/Msn302 |
0.342 |
|
| 2009 |
Proux E, Studer RA, Moretti S, Robinson-Rechavi M. Selectome: a database of positive selection. Nucleic Acids Research. 37: D404-7. PMID 18957445 DOI: 10.1093/Nar/Gkn768 |
0.417 |
|
| 2009 |
Bastian FB, Parmentier G, Robinson-Rechavi M. Generating Homology Relationships by Alignment of Anatomical Ontologies Nature Precedings. DOI: 10.1038/Npre.2009.3546.1 |
0.362 |
|
| 2008 |
Roux J, Robinson-Rechavi M. Developmental constraints on vertebrate genome evolution. Plos Genetics. 4: e1000311. PMID 19096706 DOI: 10.1371/Journal.Pgen.1000311 |
0.664 |
|
| 2008 |
Abad P, Gouzy J, Aury JM, Castagnone-Sereno P, Danchin EG, Deleury E, Perfus-Barbeoch L, Anthouard V, Artiguenave F, Blok VC, Caillaud MC, Coutinho PM, Dasilva C, De Luca F, Deau F, ... ... Robinson-Rechavi M, et al. Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita. Nature Biotechnology. 26: 909-15. PMID 18660804 DOI: 10.1038/Nbt.1482 |
0.35 |
|
| 2008 |
Robinson-Rechavi M. Perspective: from molecular endocrinology of mouse to genomic endocrinology of animals. Molecular and Cellular Endocrinology. 293: 2-4. PMID 18616982 DOI: 10.1016/J.Mce.2008.06.005 |
0.351 |
|
| 2008 |
Putnam NH, Butts T, Ferrier DE, Furlong RF, Hellsten U, Kawashima T, Robinson-Rechavi M, Shoguchi E, Terry A, Yu JK, Benito-Gutiérrez EL, Dubchak I, Garcia-Fernà ndez J, Gibson-Brown JJ, Grigoriev IV, et al. The amphioxus genome and the evolution of the chordate karyotype. Nature. 453: 1064-71. PMID 18563158 DOI: 10.1038/Nature06967 |
0.411 |
|
| 2008 |
Holland LZ, Albalat R, Azumi K, Benito-Gutiérrez E, Blow MJ, Bronner-Fraser M, Brunet F, Butts T, Candiani S, Dishaw LJ, Ferrier DE, Garcia-Fernà ndez J, Gibson-Brown JJ, Gissi C, Godzik A, ... ... Robinson-Rechavi M, et al. The amphioxus genome illuminates vertebrate origins and cephalochordate biology. Genome Research. 18: 1100-11. PMID 18562680 DOI: 10.1101/Gr.073676.107 |
0.538 |
|
| 2008 |
Studer RA, Penel S, Duret L, Robinson-Rechavi M. Pervasive positive selection on duplicated and nonduplicated vertebrate protein coding genes. Genome Research. 18: 1393-402. PMID 18562677 DOI: 10.1101/Gr.076992.108 |
0.473 |
|
| 2008 |
Crossgrove K, Maina CV, Robinson-Rechavi M, Lochner MC. Orthologues of the Drosophila melanogaster E75 molting control gene in the filarial parasites Brugia malayi and Dirofilaria immitis. Molecular and Biochemical Parasitology. 157: 92-7. PMID 17942167 DOI: 10.1016/J.Molbiopara.2007.08.010 |
0.388 |
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| 2008 |
Bastian F, Parmentier G, Roux J, Moretti S, Laudet V, Robinson-Rechavi M. Bgee: Integrating and comparing heterogeneous transcriptome data among species Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5109: 124-131. DOI: 10.1007/978-3-540-69828-9_12 |
0.466 |
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| 2007 |
Amoutzias GD, Pichler EE, Mian N, De Graaf D, Imsiridou A, Robinson-Rechavi M, Bornberg-Bauer E, Robertson DL, Oliver SG. A protein interaction atlas for the nuclear receptors: properties and quality of a hub-based dimerisation network. Bmc Systems Biology. 1: 34. PMID 17672894 DOI: 10.1186/1752-0509-1-34 |
0.322 |
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| 2007 |
Amoutzias GD, Veron AS, Weiner J, Robinson-Rechavi M, Bornberg-Bauer E, Oliver SG, Robertson DL. One billion years of bZIP transcription factor evolution: conservation and change in dimerization and DNA-binding site specificity. Molecular Biology and Evolution. 24: 827-35. PMID 17194801 DOI: 10.1093/Molbev/Msl211 |
0.344 |
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| 2006 |
Escriva H, Bertrand S, Germain P, Robinson-Rechavi M, Umbhauer M, Cartry J, Duffraisse M, Holland L, Gronemeyer H, Laudet V. Neofunctionalization in vertebrates: the example of retinoic acid receptors. Plos Genetics. 2: e102. PMID 16839186 DOI: 10.1371/Journal.Pgen.0020102 |
0.422 |
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| 2006 |
Brunet FG, Roest Crollius H, Paris M, Aury JM, Gibert P, Jaillon O, Laudet V, Robinson-Rechavi M. Gene loss and evolutionary rates following whole-genome duplication in teleost fishes. Molecular Biology and Evolution. 23: 1808-16. PMID 16809621 DOI: 10.1093/Molbev/Msl049 |
0.508 |
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| 2006 |
Robinson-Rechavi M, Alibés A, Godzik A. Contribution of electrostatic interactions, compactness and quaternary structure to protein thermostability: lessons from structural genomics of Thermotoga maritima. Journal of Molecular Biology. 356: 547-57. PMID 16375925 DOI: 10.1016/J.Jmb.2005.11.065 |
0.315 |
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| 2005 |
Robinson-Rechavi M, Maina CV, Gissendanner CR, Laudet V, Sluder A. Explosive lineage-specific expansion of the orphan nuclear receptor HNF4 in nematodes. Journal of Molecular Evolution. 60: 577-86. PMID 15983867 DOI: 10.1007/S00239-004-0175-8 |
0.336 |
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| 2004 |
Jaillon O, Aury JM, Brunet F, Petit JL, Stange-Thomann N, Mauceli E, Bouneau L, Fischer C, Ozouf-Costaz C, Bernot A, Nicaud S, Jaffe D, Fisher S, Lutfalla G, Dossat C, ... ... Robinson-Rechavi M, et al. Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. Nature. 431: 946-57. PMID 15496914 DOI: 10.1038/Nature03025 |
0.413 |
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| 2004 |
Bertrand S, Brunet FG, Escriva H, Parmentier G, Laudet V, Robinson-Rechavi M. Evolutionary genomics of nuclear receptors: from twenty-five ancestral genes to derived endocrine systems. Molecular Biology and Evolution. 21: 1923-37. PMID 15229292 DOI: 10.1093/Molbev/Msh200 |
0.416 |
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| 2004 |
Robinson-Rechavi M, Boussau B, Laudet V. Phylogenetic dating and characterization of gene duplications in vertebrates: the cartilaginous fish reference. Molecular Biology and Evolution. 21: 580-6. PMID 14694077 DOI: 10.1093/Molbev/Msh046 |
0.521 |
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| 2004 |
Ruau D, Duarte J, Ourjdal T, Perrière G, Laudet V, Robinson-Rechavi M. Update of NUREBASE: nuclear hormone receptor functional genomics. Nucleic Acids Research. 32: D165-7. PMID 14681385 DOI: 10.1093/Nar/Gkh062 |
0.348 |
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| 2003 |
Lutfalla G, Roest Crollius H, Brunet FG, Laudet V, Robinson-Rechavi M. Inventing a sex-specific gene: a conserved role of DMRT1 in teleost fishes plus a recent duplication in the medaka Oryzias latipes resulted in DMY. Journal of Molecular Evolution. 57: S148-53. PMID 15008411 DOI: 10.1007/S00239-003-0021-4 |
0.476 |
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| 2003 |
Robinson-Rechavi M, Laudet V. Bioinformatics of nuclear receptors. Methods in Enzymology. 364: 95-118. PMID 14631841 DOI: 10.1016/S0076-6879(03)64006-1 |
0.344 |
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| 2003 |
Bury NR, Sturm A, Le Rouzic P, Lethimonier C, Ducouret B, Guiguen Y, Robinson-Rechavi M, Laudet V, Rafestin-Oblin ME, Prunet P. Evidence for two distinct functional glucocorticoid receptors in teleost fish. Journal of Molecular Endocrinology. 31: 141-56. PMID 12914532 DOI: 10.1677/Jme.0.0310141 |
0.325 |
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| 2003 |
Escrivá García H, Laudet V, Robinson-Rechavi M. Nuclear receptors are markers of animal genome evolution. Journal of Structural and Functional Genomics. 3: 177-84. PMID 12836696 DOI: 10.1023/A:1022638706822 |
0.405 |
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| 2003 |
Bonneton F, Zelus D, Iwema T, Robinson-Rechavi M, Laudet V. Rapid divergence of the ecdysone receptor in Diptera and Lepidoptera suggests coevolution between ECR and USP-RXR. Molecular Biology and Evolution. 20: 541-53. PMID 12654933 DOI: 10.1093/Molbev/Msg054 |
0.309 |
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| 2002 |
Duarte J, Perrière G, Laudet V, Robinson-Rechavi M. NUREBASE: database of nuclear hormone receptors. Nucleic Acids Research. 30: 364-8. PMID 11752338 DOI: 10.1093/Nar/30.1.364 |
0.31 |
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| 2001 |
Robinson-Rechavi M, Carpentier AS, Duffraisse M, Laudet V. How many nuclear hormone receptors are there in the human genome? Trends in Genetics : Tig. 17: 554-6. PMID 11585645 DOI: 10.1016/S0168-9525(01)02417-9 |
0.419 |
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| 2001 |
Robinson-Rechavi M, Marchand O, Escriva H, Laudet V. An ancestral whole-genome duplication may not have been responsible for the abundance of duplicated fish genes. Current Biology : Cb. 11: R458-9. PMID 11448784 DOI: 10.1016/S0960-9822(01)00280-9 |
0.334 |
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| 2001 |
Robinson-Rechavi M, Marchand O, Escriva H, Bardet PL, Zelus D, Hughes S, Laudet V. Euteleost fish genomes are characterized by expansion of gene families. Genome Research. 11: 781-8. PMID 11337474 DOI: 10.1101/Gr.165601 |
0.465 |
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| 2001 |
Robinson-Rechavi M, Laudet V. Evolutionary rates of duplicate genes in fish and mammals. Molecular Biology and Evolution. 18: 681-3. PMID 11264421 DOI: 10.1093/Oxfordjournals.Molbev.A003849 |
0.549 |
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| 2001 |
ROBINSON-RECHAVI M, GRAUR D. USAGE OPTIMIZATION OF UNEVENLY SAMPLED DATA THROUGH THE COMBINATION OF QUARTET TREES: A EUTHERIAN DRAFT PHYLOGENY BASED ON 640 NUCLEAR AND MITOCHONDRIAL PROTEINS Israel Journal of Zoology. 47: 259-270. DOI: 10.1560/W1G1-Bdtw-Hj3X-Fjpw |
0.588 |
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| 2001 |
Robinson-Rechavi M, Marchand O, Escriva H, Laudet V. Re: Revisiting recent challenges to the ancient fish-specific genome duplication hypothesis Current Biology. 11. DOI: 10.1016/S0960-9822(01)00611-X |
0.486 |
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| 2000 |
Zelus D, Robinson-Rechavi M, Delacre M, Auriault C, Laudet V. Fast evolution of interleukin-2 in mammals and positive selection in ruminants. Journal of Molecular Evolution. 51: 234-44. PMID 11029068 DOI: 10.1007/S002390010085 |
0.367 |
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| 2000 |
Robinson-Rechavi M, Ponger L, Mouchiroud D. Nuclear gene LCAT supports rodent monophyly. Molecular Biology and Evolution. 17: 1410-2. PMID 10960041 DOI: 10.1093/Oxfordjournals.Molbev.A026424 |
0.71 |
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