Megan M. McEvoy - Related publications

Biochemistry & Molecular Biophysics University of Arizona, Tucson, AZ 
Biochemistry, General Biophysics
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Cole TR, Igumenova TI. Reactivity of Thiol-Rich Zn Sites in Diacylglycerol-Sensing PKC C1 Domain Probed by NMR Spectroscopy. Frontiers in Molecular Biosciences. 8: 728711. PMID 34447788 DOI: 10.3389/fmolb.2021.728711   
2021 Uhlemann EE, Lee W, Tonelli M, Dmitriev OY. At sixes and sevens: a cryptic domain in the metal binding chain of the human copper transporter ATP7A. Biophysical Journal. PMID 34461106 DOI: 10.1016/j.bpj.2021.08.029   
2021 Featherston ER, Issertell EJ, Cotruvo JA. Probing Lanmodulin's Lanthanide Recognition via Sensitized Luminescence Yields a Platform for Quantification of Terbium in Acid Mine Drainage. Journal of the American Chemical Society. 143: 14287-14299. PMID 34432449 DOI: 10.1021/jacs.1c06360   
2021 Alshanski I, Shalev DE, Yitzchaik S, Hurevich M. Determining the structure and binding mechanism of oxytocin-Cu complex using paramagnetic relaxation enhancement NMR analysis. Journal of Biological Inorganic Chemistry : Jbic : a Publication of the Society of Biological Inorganic Chemistry. PMID 34459989 DOI: 10.1007/s00775-021-01897-1   
2021 Tanaka M, Kato T, Oda M. Conformational changes of α-helical peptides with different hydrophobic residues induced by metal-ion binding. Biophysical Chemistry. 277: 106661. PMID 34388679 DOI: 10.1016/j.bpc.2021.106661   
2021 Pinter TBJ, Ruckthong L, Stuckey JA, Deb A, Penner-Hahn JE, Pecoraro VL. Open Reading Frame 1 Protein of the Human Long Interspersed Nuclear Element 1 Retrotransposon Binds Multiple Equivalents of Lead. Journal of the American Chemical Society. PMID 34494819 DOI: 10.1021/jacs.1c06461   
2021 Williams AN, Sherman MB, Smith HQ, Taube S, Pettitt BM, Wobus CE, Smith TJ. Multiple signals in the gut contract the mouse norovirus capsid to block antibody binding while enhancing receptor affinity. Journal of Virology. JVI0147121. PMID 34468172 DOI: 10.1128/JVI.01471-21   
2021 Slope LN, Daubney OJ, Campbell H, White SA, Peacock A. Location Dependent Lanthanide Selectivity Engineered into Structurally Characterized Designed Coiled Coils. Angewandte Chemie (International Ed. in English). PMID 34495573 DOI: 10.1002/anie.202110500   
2021 Toyama Y, Harkness RW, Kay LE. Dissecting the role of interprotomer cooperativity in the activation of oligomeric high-temperature requirement A2 protein. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34446566 DOI: 10.1073/pnas.2111257118   
2021 Luo H, Cheng Q, He D, Wang X, Pan X. Effects of photo-irradiation on mercury binding to dissolved organic matter: Insights from FT-IR and synchronous fluorescence two-dimensional correlation spectroscopy. Chemosphere. 287: 132027. PMID 34455123 DOI: 10.1016/j.chemosphere.2021.132027   
2021 Dash R, Mitra S, Munni YA, Choi HJ, Ali MC, Barua L, Jang TJ, Moon IS. Computational Insights into the Deleterious Impacts of Missense Variants on -Acetyl-d-glucosamine Kinase Structure and Function. International Journal of Molecular Sciences. 22. PMID 34360815 DOI: 10.3390/ijms22158048   
2021 Markham KJ, Tikhonova EB, Scarpa AC, Hariharan P, Katsube S, Guan L. Complete cysteine-scanning mutagenesis of the Salmonella typhimurium melibiose permease. The Journal of Biological Chemistry. 101090. PMID 34416232 DOI: 10.1016/j.jbc.2021.101090   
2021 Aggarwal R, Gupta A, Chelur V, Jawahar CV, Priyakumar UD. DeepPocket: Ligand Binding Site Detection and Segmentation using 3D Convolutional Neural Networks. Journal of Chemical Information and Modeling. PMID 34374539 DOI: 10.1021/acs.jcim.1c00799   
2021 Wang W, Liu Q, Liu Q, Hendrickson WA. Conformational equilibria in allosteric control of Hsp70 chaperones. Molecular Cell. PMID 34453889 DOI: 10.1016/j.molcel.2021.07.039   
2021 Bystranowska D, Skorupska A, Sołtys K, Padjasek M, Krężel A, Żak A, Kaus-Drobek M, Taube M, Kozak M, Ożyhar A. Nucleobindin-2 consists of two structural components: The Zn-sensitive N-terminal half, consisting of nesfatin-1 and -2, and the Ca-sensitive C-terminal half, consisting of nesfatin-3. Computational and Structural Biotechnology Journal. 19: 4300-4318. PMID 34429849 DOI: 10.1016/j.csbj.2021.07.036   
2021 Mondal R, Rimon A, Masrati G, Ben-Tal N, Friedler A, Padan E. Towards Molecular Understanding of the pH Dependence Characterizing NhaA of Which Structural Fold is Shared by Other Transporters. Journal of Molecular Biology. 433: 167156. PMID 34273399 DOI: 10.1016/j.jmb.2021.167156   
2021 Gubensäk N, Schrank E, Hartlmüller C, Göbl C, Falsone FS, Becker W, Wagner GE, Pulido S, Meyer NH, Pavkov-Keller T, Madl T, Reidl J, Zangger K. Structural and DNA binding properties of the cytoplasmic domain of Vibrio cholerae transcription factor ToxR. The Journal of Biological Chemistry. 101167. PMID 34487759 DOI: 10.1016/j.jbc.2021.101167   
2021 Pegram LM, Anderson JW, Ahn NG. Dynamic equilibria in protein kinases. Current Opinion in Structural Biology. 71: 215-222. PMID 34425481 DOI: 10.1016/   
2021 Lushpa VA, Goncharuk MV, Lin C, Zalevsky AO, Talyzina IA, Luginina AP, Vakhrameev DD, Shevtsov MB, Goncharuk SA, Arseniev AS, Borshchevskiy VI, Wang X, Mineev KS. Modulation of Toll-like receptor 1 intracellular domain structure and activity by Zn ions. Communications Biology. 4: 1003. PMID 34429510 DOI: 10.1038/s42003-021-02532-0   
2021 Ayyamperumal S, Dj D, Tallapaneni V, Mohan S, S B, Selvaraj J, Joghee NM, Mjn C. Molecular docking analysis of α-Topoisomerase II with δ-Carboline derivatives as potential anticancer agents. Bioinformation. 17: 249-265. PMID 34393444 DOI: 10.6026/97320630017249   
2021 Egbert M, Ghani U, Ashizawa R, Kotelnikov S, Nguyen T, Desta I, Hashemi N, Padhorny D, Kozakov D, Vajda S. Assessing the binding properties of CASP14 targets and models. Proteins. PMID 34368994 DOI: 10.1002/prot.26209   
2021 Sauer DB, Wang B, Sudar JC, Song J, Marden J, Rice WJ, Wang DN. The ups and downs of elevator-type di-/tricarboxylate membrane transporters. The Febs Journal. PMID 34403567 DOI: 10.1111/febs.16158   
2021 Feng N, Feng H, Wang S, Punekar AS, Ladenstein R, Wang DC, Zhang Q, Ding J, Liu W. Structures of heat shock factor trimers bound to DNA. Iscience. 24: 102951. PMID 34458700 DOI: 10.1016/j.isci.2021.102951   
2021 Braun L, Schoen I, Vogel V. PIP-induced membrane binding of the Vinculin tail competes with its other binding partners. Biophysical Journal. PMID 34411575 DOI: 10.1016/j.bpj.2021.08.018   
2021 Hymel D, Tsuji K, Grant RA, Chingle RM, Kunciw DL, Yaffe MB, Burke TR. Design and synthesis of a new orthogonally protected glutamic acid analog and its use in the preparation of high affinity polo-like kinase 1 polo-box domain - binding peptide macrocycles. Organic & Biomolecular Chemistry. PMID 34346472 DOI: 10.1039/d1ob01120k   
2021 Peterson TA, Piper RC. Deconvolution of Multiple Rab Binding Domains Using the Batch Yeast 2-Hybrid Method DEEPN. Methods in Molecular Biology (Clifton, N.J.). 2293: 117-141. PMID 34453714 DOI: 10.1007/978-1-0716-1346-7_9   
2021 Xiao T, Sun L, Zhang M, Li Z, Haura EB, Schonbrunn E, Ji H. Synthesis and Structural Characterization of a Monocarboxylic Inhibitor for GRB2 SH2 Domain. Bioorganic & Medicinal Chemistry Letters. 128354. PMID 34506932 DOI: 10.1016/j.bmcl.2021.128354   
2021 Ali MS, Rehman MT, Al-Lohedan HA, AlAjmi MF. Exploration of the binding between cuminol and bovine serum albumin through spectroscopic, molecular docking and molecular dynamics methods. Journal of Biomolecular Structure & Dynamics. 1-9. PMID 34488560 DOI: 10.1080/07391102.2021.1971560   
2021 Voith von Voithenberg L, Barth A, Trauschke V, Demarco B, Tyagi S, Koehler C, Lemke EA, Lamb DC. Comparative analysis of the coordinated motion of Hsp70s from different organelles observed by single-molecule three-color FRET. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34389669 DOI: 10.1073/pnas.2025578118   
2021 Klebe G, Nguyen D, Abdullin D, Heubach CA, Pfaffeneder T, Nguyen A, Heine A, Reuter K, Diederich F, Schiemann O. Unraveling a ligand-induced twist of a homodimeric enzyme by pulsed electron-electron double resonance. Angewandte Chemie (International Ed. in English). PMID 34387025 DOI: 10.1002/anie.202108179   
2021 Bandera AM, Bartho J, Lammens K, Drexler DJ, Kleinschwärzer J, Hopfner KP, Witte G. BusR senses bipartite DNA binding motifs by a unique molecular ruler architecture. Nucleic Acids Research. PMID 34432045 DOI: 10.1093/nar/gkab736   
2021 Ye X, Mayne L, Englander SW. A conserved strategy for structure change and energy transduction in Hsp104 and other AAA+ protein motors. The Journal of Biological Chemistry. 101066. PMID 34384781 DOI: 10.1016/j.jbc.2021.101066   
2021 Zhao J, Liu M, Zang J, Yang S, Chen R, Zhao X, Ding L. Molecular docking, 3D-QASR and molecular dynamics simulations of thiazoles Pin1 inhibitors. Journal of Biomolecular Structure & Dynamics. 1-15. PMID 34499020 DOI: 10.1080/07391102.2021.1975568   
2021 VanSchouwen B, Boulton S, Melacini G. Mutual Protein-Ligand Conformational Selection Drives cGMP vs. cAMP Selectivity in Protein Kinase G. Journal of Molecular Biology. 433: 167202. PMID 34400180 DOI: 10.1016/j.jmb.2021.167202   
2021 Schirmer T, de Beer TAP, Tamegger S, Harms A, Dietz N, Dranow DM, Edwards TE, Myler PJ, Phan I, Dehio C. Evolutionary Diversification of Host-Targeted Effectors Proteins Derived from a Conserved FicTA Toxin-Antitoxin Module. Microorganisms. 9. PMID 34442725 DOI: 10.3390/microorganisms9081645   
2021 Bie LH, Fei JW, Gao J. Molecular mechanism of methyl-dependent and spatial-specific DNA recognition of c-Jun homodimer. Journal of Molecular Modeling. 27: 227. PMID 34264385 DOI: 10.1007/s00894-021-04840-y   
2021 An X, Bai Q, Bing Z, Liu H, Yao X. Insights into the molecular mechanism of positive cooperativity between partial agonist MK-8666 and full allosteric agonist AP8 of hGPR40 by Gaussian accelerated molecular dynamics (GaMD) simulations. Computational and Structural Biotechnology Journal. 19: 3978-3989. PMID 34377364 DOI: 10.1016/j.csbj.2021.07.008   
2021 Merő B, Koprivanacz K, Cserkaszky A, Radnai L, Vas V, Kudlik G, Gógl G, Sok P, Póti ÁL, Szeder B, Nyitray L, Reményi A, Geiszt M, Buday L. Characterization of the Intramolecular Interactions and Regulatory Mechanisms of the Scaffold Protein Tks4. International Journal of Molecular Sciences. 22. PMID 34360869 DOI: 10.3390/ijms22158103   
2021 Madland E, Forsberg Z, Wang Y, Lindorff-Larsen K, Niebisch A, Modregger J, Eijsink VGH, Aachmann FL, Courtade G. Structural and functional variation of chitin-binding domains of a lytic polysaccharide monooxygenase from Cellvibrio japonicus. The Journal of Biological Chemistry. 101084. PMID 34411561 DOI: 10.1016/j.jbc.2021.101084   
2021 T RR, Saharay M, Smith JC, Krishnan M. Correlated Response of Protein Side-Chain Fluctuations and Conformational Entropy to Ligand Binding. The Journal of Physical Chemistry. B. PMID 34423989 DOI: 10.1021/acs.jpcb.1c01227   
2021 van Aalst E, Koneri J, Wylie BJ. In Silico Identification of Cholesterol Binding Motifs in the Chemokine Receptor CCR3. Membranes. 11. PMID 34436333 DOI: 10.3390/membranes11080570   
2021 Ukey S, Choudhury C, Sharma P. Identification of unique subtype-specific interaction features in Class II zinc-dependent HDAC subtype binding pockets: A computational study. Journal of Biosciences. 46. PMID 34323221   
2021 Li ZJ, Srebnik S, Rojas OJ. Revisiting Cation Complexation and Hydrogen Bonding of Single-Chain Polyguluronate Alginate. Biomacromolecules. PMID 34461721 DOI: 10.1021/acs.biomac.1c00840   
2021 Kitaoku Y, Fukamizo T, Kumsaoad S, Ubonbal P, Robinson RC, Suginta W. A structural model for (GlcNAc) translocation via a periplasmic chitooligosaccharide binding protein from marine Vibrio bacteria. The Journal of Biological Chemistry. 101071. PMID 34400168 DOI: 10.1016/j.jbc.2021.101071   
2021 Abraham ET, Oecal S, Mörgelin M, Schmid PWN, Buchner J, Baumann U, Gebauer JM. Collagen's primary structure determines collagen:HSP47 complex stoichiometry. The Journal of Biological Chemistry. 101169. PMID 34487762 DOI: 10.1016/j.jbc.2021.101169   
2021 Geerds C, Haas A, Niemann HH. Conformational changes of loops highlight a potential binding site in Rhodococcus equi VapB. Acta Crystallographica. Section F, Structural Biology Communications. 77: 246-253. PMID 34341190 DOI: 10.1107/S2053230X2100738X   
2021 Rong Y, Jiang J, Gao Y, Guo J, Song D, Liu W, Zhang M, Zhao Y, Xiao B, Liu Z. TMEM120A contains a specific coenzyme A-binding site and might not mediate poking- or stretch-induced channel activities in cells. Elife. 10. PMID 34409941 DOI: 10.7554/eLife.71474   
2021 Kumar A, Singh R, Ghosh B, Makde RD. Crystal structure of aspartyl dipeptidase from Xenopus laevis revealed ligand binding induced loop ordering and catalytic triad assembly. Proteins. PMID 34431561 DOI: 10.1002/prot.26220   
2021 Czapinska H, Winiewska-Szajewska M, Szymaniec-Rutkowska A, Piasecka A, Bochtler M, Poznański J. Halogen Atoms in the Protein-Ligand System. Structural and Thermodynamic Studies of the Binding of Bromobenzotriazoles by the Catalytic Subunit of Human Protein Kinase CK2. The Journal of Physical Chemistry. B. 125: 2491-2503. PMID 33689348 DOI: 10.1021/acs.jpcb.0c10264   
2021 Li X, Li X, Liu F, Li S, Shi D. Rational Multitargeted Drug Design Strategy from the Perspective of a Medicinal Chemist. Journal of Medicinal Chemistry. PMID 34313432 DOI: 10.1021/acs.jmedchem.1c00683