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Dimitrios Vavylonis - Publications

Affiliations: 
Physics Lehigh University, Bethlehem, PA, United States 
Area:
General Physics, General Biophysics, Cell Biology
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46 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Smith H, Pinkerton N, Heisler DB, Kudryashova E, Hall AR, Karch KR, Norris A, Wysocki V, Sotomayor M, Reisler E, Vavylonis D, Kudryashov DS. the Understanding of ACD Toxicity with the Discovery of Cyclic Forms of Actin Oligomers. International Journal of Molecular Sciences. 22. PMID 33450834 DOI: 10.3390/ijms22020718  0.36
2018 Kudryashova E, Heisler DB, Williams B, Harker AJ, Shafer K, Quinlan ME, Kovar DR, Vavylonis D, Kudryashov DS. Actin Cross-Linking Toxin Is a Universal Inhibitor of Tandem-Organized and Oligomeric G-Actin Binding Proteins. Current Biology : Cb. PMID 29731300 DOI: 10.1016/j.cub.2018.03.065  0.84
2016 Merlini L, Khalili B, Bendezú FO, Hurwitz D, Vincenzetti V, Vavylonis D, Martin SG. Local Pheromone Release from Dynamic Polarity Sites Underlies Cell-Cell Pairing during Yeast Mating. Current Biology : Cb. PMID 27020743 DOI: 10.1016/j.cub.2016.02.064  1
2016 Zhang D, Bidone TC, Vavylonis D. ER-PM Contacts Define Actomyosin Kinetics for Proper Contractile Ring Assembly. Current Biology : Cb. PMID 26877082 DOI: 10.1016/j.cub.2015.12.070  1
2015 Tang H, Bidone TC, Vavylonis D. Computational model of polarized actin cables and cytokinetic actin ring formation in budding yeast. Cytoskeleton (Hoboken, N.J.). PMID 26538307 DOI: 10.1002/cm.21258  1
2015 Heisler DB, Kudryashova E, Grinevich DO, Suarez C, Winkelman JD, Birukov KG, Kotha SR, Parinandi NL, Vavylonis D, Kovar DR, Kudryashov DS. ACTIN-DIRECTED TOXIN. ACD toxin-produced actin oligomers poison formin-controlled actin polymerization. Science (New York, N.Y.). 349: 535-9. PMID 26228148 DOI: 10.1126/science.aab4090  0.84
2015 Xu T, Vavylonis D, Tsai FC, Koenderink GH, Nie W, Yusuf E, I-Ju Lee, Wu JQ, Huang X. SOAX: a software for quantification of 3D biopolymer networks. Scientific Reports. 5: 9081. PMID 25765313 DOI: 10.1038/srep09081  0.44
2015 Nie W, Wei MT, Ou-Yang HD, Jedlicka SS, Vavylonis D. Formation of contractile networks and fibers in the medial cell cortex through myosin-II turnover, contraction, and stress-stabilization. Cytoskeleton (Hoboken, N.J.). 72: 29-46. PMID 25641802 DOI: 10.1002/cm.21207  1
2014 Bidone TC, Tang H, Vavylonis D. INSIGHTS INTO THE MECHANICS OF CYTOKINETIC RING ASSEMBLY USING 3D MODELING. International Mechanical Engineering Congress and Exposition : [Proceedings] / International Mechanical Engineering Congress and Exposition. International Mechanical Engineering Congress and Exposition. 9. PMID 25844404 DOI: 10.1115/IMECE2014-39006  1
2014 Bidone TC, Tang H, Vavylonis D. Dynamic network morphology and tension buildup in a 3D model of cytokinetic ring assembly. Biophysical Journal. 107: 2618-28. PMID 25468341 DOI: 10.1016/j.bpj.2014.10.034  1
2014 Tang H, Laporte D, Vavylonis D. Actin cable distribution and dynamics arising from cross-linking, motor pulling, and filament turnover. Molecular Biology of the Cell. 25: 3006-16. PMID 25103242 DOI: 10.1091/mbc.E14-05-0965  1
2014 Xu T, Vavylonis D, Huang X. 3D actin network centerline extraction with multiple active contours. Medical Image Analysis. 18: 272-84. PMID 24316442 DOI: 10.1016/j.media.2013.10.015  1
2013 Drake T, Vavylonis D. Model of fission yeast cell shape driven by membrane-bound growth factors and the cytoskeleton. Plos Computational Biology. 9: e1003287. PMID 24146607 DOI: 10.1371/journal.pcbi.1003287  1
2013 Watanabe N, Yamashiro S, Vavylonis D, Kiuchi T. Molecular viewing of actin polymerizing actions and beyond: combination analysis of single-molecule speckle microscopy with modeling, FRAP and s-FDAP (sequential fluorescence decay after photoactivation). Development, Growth & Differentiation. 55: 508-14. PMID 23621590 DOI: 10.1111/dgd.12060  1
2013 Ryan GL, Watanabe N, Vavylonis D. Image analysis tools to quantify cell shape and protein dynamics near the leading edge. Cell Structure and Function. 38: 1-7. PMID 23165752 DOI: DN/JST.JSTAGE/csf/12020  1
2012 Laporte D, Ojkic N, Vavylonis D, Wu JQ. α-Actinin and fimbrin cooperate with myosin II to organize actomyosin bundles during contractile-ring assembly. Molecular Biology of the Cell. 23: 3094-110. PMID 22740629 DOI: 10.1091/mbc.E12-02-0123  1
2012 Ryan GL, Petroccia HM, Watanabe N, Vavylonis D. Excitable actin dynamics in lamellipodial protrusion and retraction. Biophysical Journal. 102: 1493-502. PMID 22500749 DOI: 10.1016/j.bpj.2012.03.005  1
2012 Ryan GL, Watanabe N, Vavylonis D. A review of models of fluctuating protrusion and retraction patterns at the leading edge of motile cells. Cytoskeleton (Hoboken, N.J.). 69: 195-206. PMID 22354870 DOI: 10.1002/cm.21017  1
2012 Drake T, Yusuf E, Vavylonis D. A systems-biology approach to yeast actin cables. Advances in Experimental Medicine and Biology. 736: 325-35. PMID 22161338 DOI: 10.1007/978-1-4419-7210-1_19  1
2011 Smith MB, Karatekin E, Gohlke A, Mizuno H, Watanabe N, Vavylonis D. Interactive, computer-assisted tracking of speckle trajectories in fluorescence microscopy: application to actin polymerization and membrane fusion. Biophysical Journal. 101: 1794-804. PMID 21961607 DOI: 10.1016/j.bpj.2011.09.007  1
2011 Ojkic N, Wu JQ, Vavylonis D. Model of myosin node aggregation into a contractile ring: the effect of local alignment. Journal of Physics. Condensed Matter : An Institute of Physics Journal. 23: 374103. PMID 21862839 DOI: 10.1088/0953-8984/23/37/374103  1
2011 Xu T, Li H, Shen T, Ojkic N, Vavylonis D, Huang X. EXTRACTION AND ANALYSIS OF ACTIN NETWORKS BASED ON OPEN ACTIVE CONTOUR MODELS. Proceedings / Ieee International Symposium On Biomedical Imaging: From Nano to Macro. Ieee International Symposium On Biomedical Imaging. 2011: 1334-1340. PMID 21822463 DOI: 10.1109/ISBI.2011.5872647  1
2010 Drake T, Vavylonis D. Cytoskeletal dynamics in fission yeast: a review of models for polarization and division. Hfsp Journal. 4: 122-30. PMID 21119765 DOI: 10.2976/1.3385659  1
2010 Li H, Shen T, Vavylonis D, Huang X. Actin filament segmentation using spatiotemporal active-surface and active-contour models. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 13: 86-94. PMID 20879218 DOI: 10.1007/978-3-642-15705-9_11  1
2010 Ojkic N, Vavylonis D. Kinetics of myosin node aggregation into a contractile ring. Physical Review Letters. 105: 048102. PMID 20867886 DOI: 10.1103/PhysRevLett.105.048102  1
2010 Smith MB, Li H, Shen T, Huang X, Yusuf E, Vavylonis D. Segmentation and tracking of cytoskeletal filaments using open active contours. Cytoskeleton (Hoboken, N.J.). 67: 693-705. PMID 20814909 DOI: 10.1002/cm.20481  1
2009 Li H, Shen T, Vavylonis D, Huang X. Actin filament tracking based on particle filters and stretching open active contour models. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 12: 673-81. PMID 20426170 DOI: 10.1007/978-3-642-04271-3_82  1
2009 Li H, Shen T, Smith MB, Fujiwara I, Vavylonis D, Huang X. AUTOMATED ACTIN FILAMENT SEGMENTATION, TRACKING AND TIP ELONGATION MEASUREMENTS BASED ON OPEN ACTIVE CONTOUR MODELS. Proceedings / Ieee International Symposium On Biomedical Imaging: From Nano to Macro. Ieee International Symposium On Biomedical Imaging. 2009: 1302-1305. PMID 20072703 DOI: 10.1109/ISBI.2009.5193303  1
2008 Wang H, Vavylonis D. Model of For3p-mediated actin cable assembly in fission yeast. Plos One. 3: e4078. PMID 19116660 DOI: 10.1371/journal.pone.0004078  1
2008 Vavylonis D, Wu JQ, Hao S, O'Shaughnessy B, Pollard TD. Assembly mechanism of the contractile ring for cytokinesis by fission yeast. Science (New York, N.Y.). 319: 97-100. PMID 18079366 DOI: 10.1126/science.1151086  1
2007 Fujiwara I, Vavylonis D, Pollard TD. Polymerization kinetics of ADP- and ADP-Pi-actin determined by fluorescence microscopy. Proceedings of the National Academy of Sciences of the United States of America. 104: 8827-32. PMID 17517656 DOI: 10.1073/pnas.0702510104  1
2006 Vavylonis D, Kovar DR, O'Shaughnessy B, Pollard TD. Model of formin-associated actin filament elongation. Molecular Cell. 21: 455-66. PMID 16483928 DOI: 10.1016/j.molcel.2006.01.016  1
2005 Vavylonis D, Yang Q, O'Shaughnessy B. Actin polymerization kinetics, cap structure, and fluctuations. Proceedings of the National Academy of Sciences of the United States of America. 102: 8543-8. PMID 15939882 DOI: 10.1073/pnas.0501435102  1
2005 O'Shaughnessy B, Vavylonis D. Non-equilibrium in adsorbed polymer layers Journal of Physics Condensed Matter. 17. DOI: 10.1088/0953-8984/17/2/R01  1
2003 O'Shaughnessy B, Vavylonis D. Irreversible adsorption from dilute polymer solutions European Physical Journal E. 11: 213-230. PMID 15011043 DOI: 10.1140/epje/i2003-10015-9  1
2003 O'Shaughnessy B, Vavylonis D. Dynamics of living polymers European Physical Journal E. 12: 481-496. PMID 15007779 DOI: 10.1140/epje/e2004-00020-9  1
2003 O'Shaughnessy B, Vavylonis D. The ultrasensitivity of living polymers. Physical Review Letters. 90: 118301. PMID 12688971 DOI: 10.1103/PhysRevLett.90.118301  1
2003 O'Shaughnessy B, Vavylonis D. Irreversibility and polymer adsorption. Physical Review Letters. 90: 056103. PMID 12633380 DOI: 10.1103/PhysRevLett.90.056103  1
2003 O'Shaughnessy B, Vavylonis D. The slowly formed Guiselin brush Europhysics Letters. 63: 895-901. DOI: 10.1209/epl/i2003-00602-4  1
2003 O'Shaughnessy B, Vavylonis D. Pulsed laser polymerization at low conversions: Broadening and chain transfer effects Macromolecular Theory and Simulations. 12: 401-412. DOI: 10.1002/mats.200350001  1
2000 O'Shaughnessy B, Vavylonis D. Interfacial Reactions: Mixed Order Kinetics and Segregation Effects Physical Review Letters. 84: 3193-3196.  1
2000 O'Shaughnessy B, Vavylonis D. Interfacial reaction kinetics European Physical Journal E. 1: 159-177.  1
1999 O'Shaughnessy B, Vavylonis D. Kinetic regimes and cross-over times in many-particle reacting systems Europhysics Letters. 45: 653-658. DOI: 10.1209/epl/i1999-00217-9  1
1999 O'Shaughnessy B, Vavylonis D. Reactions at polymer interfaces: Transitions from chemical to diffusion-control and mixed order kinetics Europhysics Letters. 45: 638-644. DOI: 10.1209/epl/i1999-00215-y  1
1999 O'Shaughnessy B, Vavylonis D. Reactive polymer interfaces: how reaction kinetics depend on reactivity and density of chemical groups Macromolecules. 32: 1785-1796. DOI: 10.1021/ma980896g  1
1998 O'Shaughnessy B, Vavylonis D. Reaction kinetics in polymer melts European Physical Journal B. 6: 363-372.  1
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