☰

Eivind Almaas, Ph.D. - Publications

Affiliations: 
2002 Ohio State University, Columbus, Columbus, OH 
Area:
Condensed Matter Physics
Tree Info Similar researchers PubMed Report error

35 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Hall M, Kültz D, Almaas E. Identification of key proteins involved in stickleback environmental adaptation with system-level analysis. Physiological Genomics. PMID 32956024 DOI: 10.1152/Physiolgenomics.00078.2020  0.327
2020 Sulheim S, Kumelj T, van Dissel D, Salehzadeh-Yazdi A, Du C, van Wezel GP, Nieselt K, Almaas E, Wentzel A, Kerkhoven EJ. Enzyme-Constrained Models and Omics Analysis of Streptomyces coelicolor Reveal Metabolic Changes that Enhance Heterologous Production. Iscience. 23: 101525. PMID 32942174 DOI: 10.1016/J.Isci.2020.101525  0.309
2020 Bjerkelund Røkke G, Hohmann-Marriott MF, Almaas E. An adjustable algal chloroplast plug-and-play model for genome-scale metabolic models. Plos One. 15: e0229408. PMID 32092117 DOI: 10.1371/Journal.Pone.0229408  0.351
2019 Martyushenko N, Almaas E. ModelExplorer - software for visual inspection and inconsistency correction of genome-scale metabolic reconstructions. Bmc Bioinformatics. 20: 56. PMID 30691403 DOI: 10.1186/S12859-019-2615-X  0.375
2019 Voigt A, Almaas E. Assessment of weighted topological overlap (wTO) to improve fidelity of gene co-expression networks. Bmc Bioinformatics. 20: 58. PMID 30691386 DOI: 10.1186/S12859-019-2596-9  0.386
2018 Kumelj T, Sulheim S, Wentzel A, Almaas E. Predicting strain engineering strategies using iKS1317: a genome-scale metabolic model of Streptomyces coelicolor. Biotechnology Journal. e1800180. PMID 30525286 DOI: 10.1002/Biot.201800180  0.324
2018 Karlsen E, Schulz C, Almaas E. Automated generation of genome-scale metabolic draft reconstructions based on KEGG. Bmc Bioinformatics. 19: 467. PMID 30514205 DOI: 10.1186/S12859-018-2472-Z  0.396
2018 Gysi DM, Voigt A, Fragoso TM, Almaas E, Nowick K. wTO: an R package for computing weighted topological overlap and a consensus network with integrated visualization tool. Bmc Bioinformatics. 19: 392. PMID 30355288 DOI: 10.1186/S12859-018-2351-7  0.388
2017 Eidsaa M, Stubbs L, Almaas E. Comparative analysis of weighted gene co-expression networks in human and mouse. Plos One. 12: e0187611. PMID 29161290 DOI: 10.1371/Journal.Pone.0187611  0.383
2017 Voigt A, Nowick K, Almaas E. A composite network of conserved and tissue specific gene interactions reveals possible genetic interactions in glioma. Plos Computational Biology. 13: e1005739. PMID 28957313 DOI: 10.1371/Journal.Pcbi.1005739  0.368
2017 MacGillivray M, Ko A, Gruber E, Sawyer M, Almaas E, Holder A. Robust Analysis of Fluxes in Genome-Scale Metabolic Pathways. Scientific Reports. 7: 268. PMID 28325918 DOI: 10.1038/S41598-017-00170-3  0.355
2016 Eidsaa M, Almaas E. Investigating the relationship between k-core and s-core network decompositions Physica a: Statistical Mechanics and Its Applications. 449: 111-125. DOI: 10.1016/J.Physa.2015.12.115  0.374
2013 Eidsaa M, Almaas E. s-core network decomposition: a generalization of k-core analysis to weighted networks. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 88: 062819. PMID 24483523 DOI: 10.1103/Physreve.88.062819  0.364
2012 Navid A, Almaas E. Genome-level transcription data of Yersinia pestis analyzed with a new metabolic constraint-based approach. Bmc Systems Biology. 6: 150. PMID 23216785 DOI: 10.1186/1752-0509-6-150  0.339
2012 Zavareh Z, Almaas E. Complex network analysis in microbial systems: theory and examples. Methods in Molecular Biology (Clifton, N.J.). 881: 551-71. PMID 22639226 DOI: 10.1007/978-1-61779-827-6_19  0.396
2009 Nowick K, Gernat T, Almaas E, Stubbs L. Differences in human and chimpanzee gene expression patterns define an evolving network of transcription factors in brain. Proceedings of the National Academy of Sciences of the United States of America. 106: 22358-63. PMID 20007773 DOI: 10.1073/Pnas.0911376106  0.304
2009 Navid A, Almaas E. Genome-scale reconstruction of the metabolic network in Yersinia pestis, strain 91001. Molecular Biosystems. 5: 368-75. PMID 19396373 DOI: 10.1039/B818710J  0.354
2009 Lee DS, Burd H, Liu J, Almaas E, Wiest O, Barabási AL, Oltvai ZN, Kapatral V. Comparative genome-scale metabolic reconstruction and flux balance analysis of multiple Staphylococcus aureus genomes identify novel antimicrobial drug targets. Journal of Bacteriology. 191: 4015-24. PMID 19376871 DOI: 10.1128/Jb.01743-08  0.301
2008 Ghim CM, Almaas E. Genetic noise control via protein oligomerization. Bmc Systems Biology. 2: 94. PMID 18980697 DOI: 10.1186/1752-0509-2-94  0.301
2008 Motter AE, Gulbahce N, Almaas E, Barabási AL. Predicting synthetic rescues in metabolic networks. Molecular Systems Biology. 4: 168. PMID 18277384 DOI: 10.1038/Msb.2008.1  0.345
2007 Almaas E. Optimal flux patterns in cellular metabolic networks. Chaos (Woodbury, N.Y.). 17: 026107. PMID 17614694 DOI: 10.1063/1.2737828  0.355
2007 Almaas E. Biological impacts and context of network theory. The Journal of Experimental Biology. 210: 1548-58. PMID 17449819 DOI: 10.1242/Jeb.003731  0.426
2006 Dezsö Z, Almaas E, Lukács A, Rácz B, Szakadát I, Barabási AL. Dynamics of information access on the web. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 73: 066132. PMID 16906939 DOI: 10.1103/Physreve.73.066132  0.324
2005 Almaas E, Oltvai ZN, Barabási AL. The activity reaction core and plasticity of metabolic networks. Plos Computational Biology. 1: e68. PMID 16362071 DOI: 10.1371/Journal.Pcbi.0010068  0.329
2005 Wuchty S, Almaas E. Evolutionary cores of domain co-occurrence networks. Bmc Evolutionary Biology. 5: 24. PMID 15788102 DOI: 10.1186/1471-2148-5-24  0.362
2005 Wuchty S, Almaas E. Peeling the yeast protein network. Proteomics. 5: 444-9. PMID 15627958 DOI: 10.1002/Pmic.200400962  0.345
2005 Macdonald PJ, Almaas E, Barabási AL. Minimum spanning trees of weighted scale-free networks Europhysics Letters. 72: 308-314. DOI: 10.1209/Epl/I2005-10232-X  0.383
2004 Almaas E, Kovács B, Vicsek T, Oltvai ZN, Barabási AL. Global organization of metabolic fluxes in the bacterium Escherichia coli Nature. 427: 839-843. PMID 14985762 DOI: 10.1038/Nature02289  0.328
2003 Almaas E, Kulkarni RV, Stroud D. Scaling properties of random walks on small-world networks. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 68: 056105. PMID 14682844 DOI: 10.1103/Physreve.68.056105  0.558
2003 Almaas E, Stroud D. Theory of two-dimensional Josephson arrays in a resonant cavity Physical Review B. 67: 64511. DOI: 10.1103/Physrevb.67.064511  0.507
2002 Almaas E, Kulkarni RV, Stroud D. Characterizing the structure of small-world networks. Physical Review Letters. 88: 098101. PMID 11864059 DOI: 10.1103/Physrevlett.88.098101  0.555
2002 Almaas E, Stroud D. Dynamics of a Josephson array in a resonant cavity Physical Review B. 65: 134502. DOI: 10.1103/Physrevb.65.134502  0.501
2001 Almaas E, Stroud D. Resonant-cavity-induced phase locking and voltage steps in a Josephson array Physical Review B. 63: 144522. DOI: 10.1103/Physrevb.63.144522  0.5
2000 Kulkarni RV, Almaas E, Stroud D. Exact results and scaling properties of small-world networks Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 61: 4268-71. PMID 11088222 DOI: 10.1103/Physreve.61.4268  0.567
2000 Kulkarni RV, Almaas E, Fisher KD, Stroud D. Fractional vortices in the XY model with π bonds Physical Review B - Condensed Matter and Materials Physics. 62: 12119-12129. DOI: 10.1103/Physrevb.62.12119  0.485
Show low-probability matches.