Aram Davtyan, Ph.D. - Publications

Affiliations: 
2013 Chemistry University of Maryland, College Park, College Park, MD 
Area:
Physical Chemistry, Biochemistry, General Biophysics, Computer Science

11 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Lu W, Bueno C, Schafer NP, Moller J, Jin S, Chen X, Chen M, Gu X, Davtyan A, de Pablo JJ, Wolynes PG. OpenAWSEM with Open3SPN2: A fast, flexible, and accessible framework for large-scale coarse-grained biomolecular simulations. Plos Computational Biology. 17: e1008308. PMID 33577557 DOI: 10.1371/journal.pcbi.1008308  0.68
2020 Jin S, Contessoto VG, Chen M, Schafer NP, Lu W, Chen X, Bueno C, Hajitaheri A, Sirovetz BJ, Davtyan A, Papoian GA, Tsai MY, Wolynes PG. AWSEM-Suite: a protein structure prediction server based on template-guided, coevolutionary-enhanced optimized folding landscapes. Nucleic Acids Research. PMID 32383764 DOI: 10.1093/nar/gkaa356  0.68
2019 Krepel D, Davtyan A, Schafer NP, Wolynes PG, Onuchic JN. Braiding topology and the energy landscape of chromosome organization proteins. Proceedings of the National Academy of Sciences of the United States of America. PMID 31888987 DOI: 10.1073/pnas.1917750117  0.68
2016 Davtyan A, Platkov M, Gruebele M, Papoian GA. Stochastic Resonance in Protein Folding Dynamics. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. PMID 26992148 DOI: 10.1002/cphc.201501125  0.36
2015 Gruebele M, Dave K, Davtyan A, Papoian GA, Platkov M. Environmental fluctuations and stochastic resonance in protein folding. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. PMID 26711088 DOI: 10.1002/cphc.201501041  0.36
2015 Davtyan A, Dama JF, Voth GA, Andersen HC. Dynamic force matching: A method for constructing dynamical coarse-grained models with realistic time dependence. The Journal of Chemical Physics. 142: 154104. PMID 25903863 DOI: 10.1063/1.4917454  0.36
2014 Davtyan A, Dama JF, Sinitskiy AV, Voth GA. The theory of ultra-coarse-graining. 2. Numerical implementation Journal of Chemical Theory and Computation. 10: 5265-5275. DOI: 10.1021/ct500834t  0.36
2012 Zheng W, Schafer NP, Davtyan A, Papoian GA, Wolynes PG. Predictive energy landscapes for protein-protein association. Proceedings of the National Academy of Sciences of the United States of America. 109: 19244-9. PMID 23129648 DOI: 10.1073/pnas.1216215109  0.36
2012 Davtyan A, Schafer NP, Zheng W, Clementi C, Wolynes PG, Papoian GA. AWSEM-MD: protein structure prediction using coarse-grained physical potentials and bioinformatically based local structure biasing. The Journal of Physical Chemistry. B. 116: 8494-503. PMID 22545654 DOI: 10.1021/jp212541y  0.36
2009 Gazazyan ED, Davtyan AK. Electron bunch interaction with a monochromatic electromagnetic wave Journal of Contemporary Physics. 44: 51-56. DOI: 10.3103/S1068337209020017  0.36
2005 Asatryan R, Davtyan A, Khachatryan L, Dellinger B. Molecular modeling studies of the reactions of phenoxy radical dimers: Pathways to dibenzofurans Journal of Physical Chemistry A. 109: 11198-11205. DOI: 10.1021/jp053047l  0.36
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