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Justin M. Spiriti, Ph.D. - Publications

Affiliations: 
2011 Chemistry Arizona State University, Tempe, AZ, United States 
Area:
Biochemistry, Physical Chemistry, General Biophysics
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10 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2014 Spiriti J, Zuckerman DM. Tunable Coarse Graining for Monte Carlo Simulations of Proteins via Smoothed Energy Tables: Direct and Exchange Simulations. Journal of Chemical Theory and Computation. 10: 5161-5177. PMID 25400525 DOI: 10.1021/Ct500622Z  0.338
2013 Spiriti J, van der Vaart A. DNA binding and bending by Sac7d is stepwise. Chembiochem : a European Journal of Chemical Biology. 14: 1434-7. PMID 23853062 DOI: 10.1002/Cbic.201300264  0.623
2012 Spiriti J, Kamberaj H, de Graff AM, Thorpe MF, van der Vaart A. DNA Bending through Large Angles Is Aided by Ionic Screening. Journal of Chemical Theory and Computation. 8: 2145-56. PMID 26593845 DOI: 10.1021/Ct300177R  0.635
2012 Spiriti J, van der Vaart A. DNA Bending through Roll Angles Is Independent of Adjacent Base Pairs. The Journal of Physical Chemistry Letters. 3: 3029-33. PMID 26292244 DOI: 10.1021/Jz301227Y  0.638
2012 Spiriti JM, Vaart Avd. Simulations of DNA Bending using Adaptive Umbrella Sampling on Roll Angles Biophysical Journal. 102. DOI: 10.1016/J.Bpj.2011.11.3971  0.592
2012 Spiriti J, Kamberaj H, Vaart AVD. Development and application of enhanced sampling techniques to simulate the long‐time scale dynamics of biomolecular systems International Journal of Quantum Chemistry. 112: 33-43. DOI: 10.1002/Qua.23139  0.463
2011 Spiriti J, Binder JK, Levitus M, van der Vaart A. Cy3-DNA stacking interactions strongly depend on the identity of the terminal basepair. Biophysical Journal. 100: 1049-57. PMID 21320450 DOI: 10.1016/J.Bpj.2011.01.014  0.644
2010 Spiriti J, van der Vaart A. Mechanism of the calcium-induced trans-cis isomerization of a non-prolyl peptide bond in Clostridium histolyticum collagenase. Biochemistry. 49: 5314-20. PMID 20499930 DOI: 10.1021/Bi1007047  0.535
2010 Spiriti JM, Vaart Avd. Investigation of Fluorescent DYE-DNA Interactions using Multidimensional Adaptive Umbrella Sampling Simulations Biophysical Journal. 98. DOI: 10.1016/J.Bpj.2009.12.3096  0.516
2008 Spiriti J, Bogani F, van der Vaart A, Ghirlanda G. Modulation of protein stability by O-glycosylation in a designed Gc-MAF analog. Biophysical Chemistry. 134: 157-67. PMID 18329161 DOI: 10.1016/J.Bpc.2008.02.005  0.548
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