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Jason D. Tubbs, Ph.D. - Publications

Affiliations: 
2013 School of Arts and Sciences University of Rochester, Rochester, NY 
Area:
General Chemistry, General Biophysics, Biochemistry, Molecular Biology
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5 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Chen JL, Bellaousov S, Tubbs JD, Kennedy SD, Lopez MJ, Mathews DH, Turner DH. NMR-assisted prediction of secondary structure for RNA: Incorporation of direction-dependent chemical shift constraints. Biochemistry. PMID 26451676 DOI: 10.1021/Acs.Biochem.5B00833  0.511
2013 Tubbs JD, Condon DE, Kennedy SD, Hauser M, Bevilacqua PC, Turner DH. The nuclear magnetic resonance of CCCC RNA reveals a right-handed helix, and revised parameters for AMBER force field torsions improve structural predictions from molecular dynamics. Biochemistry. 52: 996-1010. PMID 23286901 DOI: 10.1021/Bi3010347  0.577
2013 Tubbs JD, Condon DE, Kennedy SD, Hauser M, Bevilacqua PC, Turner DH. Correction to NMR of CCCC RNA Reveals a Right-Handed Helix and Revised Parameters for AMBER Force Field Torsions Improve Structural Predictions from Molecular Dynamics Biochemistry. 52: 3390-3392. DOI: 10.1021/Bi400401J  0.519
2011 Yildirim I, Stern HA, Tubbs JD, Kennedy SD, Turner DH. Benchmarking AMBER force fields for RNA: comparisons to NMR spectra for single-stranded r(GACC) are improved by revised χ torsions. The Journal of Physical Chemistry. B. 115: 9261-70. PMID 21721539 DOI: 10.1021/Jp2016006  0.614
2010 Yildirim I, Stern HA, Kennedy SD, Tubbs JD, Turner DH. Reparameterization of RNA chi Torsion Parameters for the AMBER Force Field and Comparison to NMR Spectra for Cytidine and Uridine. Journal of Chemical Theory and Computation. 6: 1520-1531. PMID 20463845 DOI: 10.1021/Ct900604A  0.576
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