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Des Higgins, PhD - Publications

Affiliations: 
Conway Institute University College Dublin, Dublin, County Dublin, Ireland 
Area:
Bioinformatics
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22 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Killick K, Kolch W, Higgins D, McGarry T, Orr C, Walsh AM, Nagpal S, Fearon U, Veale DJ. 05.02 Differentiating patient responses in rheumatoid arthritis – systems analysis of key molecular networks Annals of the Rheumatic Diseases. 76. DOI: 10.1136/Annrheumdis-2016-211052.2  0.315
2016 Caiazza F, Power R, Killick K, Higgins D, Kolch W, Breen L, Aherne S, Das S, O’Connor D, Tosetto M, Nolan B, Fennelly D, Sheahan K, Doherty G, Ryan EJ. Abstract 2878: The tumor-permissive role of KHSRP in colorectal cancer: Mechanistic insights from a gene expression study Cancer Research. 76: 2878-2878. DOI: 10.1158/1538-7445.Am2016-2878  0.335
2014 Yin J, Morrissey ME, Shine L, Kennedy C, Higgins DG, Kennedy BN. Genes and signaling networks regulated during zebrafish optic vesicle morphogenesis. Bmc Genomics. 15: 825. PMID 25266257 DOI: 10.1186/1471-2164-15-825  0.401
2012 Yin J, Shine L, Raycroft F, Deeti S, Reynolds A, Ackerman KM, Glaviano A, O'Farrell S, O'Leary O, Kilty C, Kennedy C, McLoughlin S, Rice M, Russell E, Higgins DG, et al. Inhibition of the Pim1 oncogene results in diminished visual function. Plos One. 7: e52177. PMID 23300608 DOI: 10.1371/journal.pone.0052177  0.318
2011 Cederlund ML, Vendrell V, Morrissey ME, Yin J, Gaora PÓ, Smyth VA, Higgins DG, Kennedy BN. mab21l2 transgenics reveal novel expression patterns of mab21l1 and mab21l2, and conserved promoter regulation without sequence conservation. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 240: 745-54. PMID 21360786 DOI: 10.1002/dvdy.22573  0.342
2010 Murphy KJ, Ter Horst JP, Cassidy AW, DeSouza IE, Morgunova M, Li C, Connole LM, O'Sullivan NC, Loscher JS, Brady AT, Rombach N, Connellan J, McGettigan PA, Scully D, Fedriani R, ... ... Higgins DG, et al. Temporal dysregulation of cortical gene expression in the isolation reared Wistar rat. Journal of Neurochemistry. 113: 601-14. PMID 20096092 DOI: 10.1111/J.1471-4159.2010.06617.X  0.644
2010 Yin J, McLoughlin S, Jeffery IB, Glaviano A, Kennedy B, Higgins DG. Integrating multiple genome annotation databases improves the interpretation of microarray gene expression data. Bmc Genomics. 11: 50. PMID 20089164 DOI: 10.1186/1471-2164-11-50  0.405
2008 Walsh DW, Roxburgh SA, McGettigan P, Berthier CC, Higgins DG, Kretzler M, Cohen CD, Mezzano S, Brazil DP, Martin F. Co-regulation of Gremlin and Notch signalling in diabetic nephropathy. Biochimica Et Biophysica Acta. 1782: 10-21. PMID 17980714 DOI: 10.1016/J.Bbadis.2007.09.005  0.531
2007 Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG. Clustal W and Clustal X version 2.0. Bioinformatics (Oxford, England). 23: 2947-8. PMID 17846036 DOI: 10.1093/Bioinformatics/Btm404  0.525
2007 O'Sullivan NC, McGettigan PA, Sheridan GK, Pickering M, Conboy L, O'Connor JJ, Moynagh PN, Higgins DG, Regan CM, Murphy KJ. Temporal change in gene expression in the rat dentate gyrus following passive avoidance learning. Journal of Neurochemistry. 101: 1085-98. PMID 17298388 DOI: 10.1111/J.1471-4159.2006.04418.X  0.641
2007 Jeffery IB, Madden SF, McGettigan PA, Perrière G, Culhane AC, Higgins DG. Integrating transcription factor binding site information with gene expression datasets. Bioinformatics (Oxford, England). 23: 298-305. PMID 17127681 DOI: 10.1093/bioinformatics/btl597  0.582
2006 Claesson MJ, Li Y, Leahy S, Canchaya C, van Pijkeren JP, Cerdeño-Tárraga AM, Parkhill J, Flynn S, O'Sullivan GC, Collins JK, Higgins D, Shanahan F, Fitzgerald GF, van Sinderen D, O'Toole PW. Multireplicon genome architecture of Lactobacillus salivarius. Proceedings of the National Academy of Sciences of the United States of America. 103: 6718-23. PMID 16617113 DOI: 10.1073/Pnas.0511060103  0.353
1993 Rice CM, Fuchs R, Higgins DG, Stoehr PJ, Cameron GN. The EMBL data library. Nucleic Acids Research. 21: 2967-71. PMID 8332519  0.42
1992 Higgins DG, Fuchs R, Stoehr PJ, Cameron GN. The EMBL Data Library. Nucleic Acids Research. 20: 2071-4. PMID 1598236  0.42
1992 Shields DC, Higgins DG, Sharp PM. GCWIND: a microcomputer program for identifying open reading frames according to codon positional G+C content. Computer Applications in the Biosciences : Cabios. 8: 521-3. PMID 1422886 DOI: 10.1093/Bioinformatics/8.5.521  0.575
1991 Powell R, Higgins DG, Wolff J, Byrnes L, Stack M, Sharp PM, Gannon F. The salmon gene encoding apolipoprotein A-I: cDNA sequence, tissue expression and evolution. Gene. 104: 155-61. PMID 1916288 DOI: 10.1016/0378-1119(91)90245-7  0.488
1990 Atkins GJ, Daly EA, Sheahan BJ, Higgins DG, Sharp PM. Multiple sclerosis and molecular mimicry. Neuropathology and Applied Neurobiology. 16: 179-80. PMID 1693178 DOI: 10.1111/J.1365-2990.1990.Tb00946.X  0.375
1989 Higgins DG, Sharp PM. Fast and sensitive multiple sequence alignments on a microcomputer. Computer Applications in the Biosciences : Cabios. 5: 151-3. PMID 2720464 DOI: 10.1093/Bioinformatics/5.2.151  0.455
1989 Higgins DG, McConnell DJ, Sharp PM. Malarial proteinase? Nature. 340: 604. PMID 2671749 DOI: 10.1038/340604a0  0.365
1988 Higgins DG, Sharp PM. CLUSTAL: a package for performing multiple sequence alignment on a microcomputer. Gene. 73: 237-44. PMID 3243435 DOI: 10.1016/0378-1119(88)90330-7  0.449
1988 Shields DC, Sharp PM, Higgins DG, Wright F. "Silent" sites in Drosophila genes are not neutral: evidence of selection among synonymous codons. Molecular Biology and Evolution. 5: 704-16. PMID 3146682 DOI: 10.1093/Oxfordjournals.Molbev.A040525  0.615
1988 Sharp PM, Cowe E, Higgins DG, Shields DC, Wolfe KH, Wright F. Codon usage patterns in Escherichia coli, Bacillus subtilis, Saccharomyces cerevisiae, Schizosaccharomyces pombe, Drosophila melanogaster and Homo sapiens; a review of the considerable within-species diversity. Nucleic Acids Research. 16: 8207-11. PMID 3138659 DOI: 10.1093/Nar/16.17.8207  0.647
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