| Year |
Citation |
Score |
| 2024 |
Gucwa M, Bijak V, Zheng H, Murzyn K, Minor W. CheckMyMetal (CMM): validating metal-binding sites in X-ray and cryo-EM data. Iucrj. PMID 39141478 DOI: 10.1107/S2052252524007073 |
0.575 |
|
| 2024 |
Zheng H, Zhang H, Zhong J, Gucwa M, Zhang Y, Ma H, Deng L, Mao L, Minor W, Wang N. PinMyMetal: A hybrid learning system to accurately model metal binding sites in macromolecules. Research Square. PMID 38463967 DOI: 10.21203/rs.3.rs-3908734/v1 |
0.565 |
|
| 2022 |
Gucwa M, Lenkiewicz J, Zheng H, Cymborowski M, Cooper DR, Murzyn K, Minor W. CMM - An enhanced platform for interactive validation of metal binding sites. Protein Science : a Publication of the Protein Society. e4525. PMID 36464767 DOI: 10.1002/pro.4525 |
0.531 |
|
| 2021 |
Zhang H, Chen P, Ma H, Woińska M, Liu D, Cooper DR, Peng G, Peng Y, Deng L, Minor W, Zheng H. virusMED: an atlas of hotspots of viral proteins. Iucrj. 8. PMID 34614039 DOI: 10.1107/S2052252521009076 |
0.485 |
|
| 2021 |
Cooper DR, Grabowski M, Zimmerman MD, Porebski PJ, Shabalin IG, Woinska M, Domagalski MJ, Zheng H, Sroka P, Cymborowski M, Czub MP, Niedzialkowska E, Venkataramany BS, Osinski T, Fratczak Z, et al. State-of-the-Art Data Management: Improving the Reproducibility, Consistency, and Traceability of Structural Biology and in Vitro Biochemical Experiments. Methods in Molecular Biology (Clifton, N.J.). 2199: 209-236. PMID 33125653 DOI: 10.1007/978-1-0716-0892-0_13 |
0.725 |
|
| 2019 |
Lipowska J, Miks CD, Kwon K, Shuvalova L, Zheng H, Lewiński K, Cooper DR, Shabalin IG, Minor W. Pyrimidine biosynthesis in pathogens - Structures and analysis of dihydroorotases from Yersinia pestis and Vibrio cholerae. International Journal of Biological Macromolecules. PMID 31207330 DOI: 10.1016/J.Ijbiomac.2019.05.149 |
0.584 |
|
| 2018 |
Hou J, Zheng H, Tzou WS, Cooper DR, Chruszcz M, Chordia MD, Kwon K, Grabowski M, Minor W. Differences in substrate specificity of V. cholerae FabH enzymes suggest new approaches for the development of novel antibiotics and biofuels. The Febs Journal. PMID 29917313 DOI: 10.1111/Febs.14588 |
0.675 |
|
| 2018 |
Handing KB, Niedzialkowska E, Shabalin IG, Kuhn ML, Zheng H, Minor W. Characterizing metal-binding sites in proteins with X-ray crystallography. Nature Protocols. 13: 1062-1090. PMID 29674755 DOI: 10.1038/Nprot.2018.018 |
0.574 |
|
| 2017 |
Porebski PJ, Sroka P, Zheng H, Cooper DR, Minor W. Molstack - interactive visualization tool for presentation, interpretation, and validation of macromolecules and electron density maps. Protein Science : a Publication of the Protein Society. PMID 28815771 DOI: 10.1002/Pro.3272 |
0.56 |
|
| 2017 |
Zheng H, Porebski PJ, Grabowski M, Cooper DR, Minor W. Databases, Repositories, and Other Data Resources in Structural Biology. Methods in Molecular Biology (Clifton, N.J.). 1607: 643-665. PMID 28573593 DOI: 10.1007/978-1-4939-7000-1_27 |
0.558 |
|
| 2017 |
Zheng H, Langner KM, Shields GP, Hou J, Kowiel M, Allen FH, Murshudov G, Minor W. Data mining of iron(II) and iron(III) bond-valence parameters, and their relevance for macromolecular crystallography. Acta Crystallographica. Section D, Structural Biology. 73: 316-325. PMID 28375143 DOI: 10.1107/S2059798317000584 |
0.514 |
|
| 2017 |
Zheng H, Cooper DR, Porebski PJ, Shabalin IG, Handing KB, Minor W. CheckMyMetal: a macromolecular metal-binding validation tool. Acta Crystallographica. Section D, Structural Biology. 73: 223-233. PMID 28291757 DOI: 10.1107/S2059798317001061 |
0.5 |
|
| 2017 |
Minor W, Porebski P, Shabalin I, Zheng H. Crystallographic tools towards understanding of macromolecular structure–function relationships Acta Crystallographica Section a Foundations and Advances. 73: C35-C35. DOI: 10.1107/S2053273317095353 |
0.486 |
|
| 2016 |
Grabowski M, Langner KM, Cymborowski M, Porebski PJ, Sroka P, Zheng H, Cooper DR, Zimmerman MD, Elsliger MA, Burley SK, Minor W. A public database of macromolecular diffraction experiments. Acta Crystallographica. Section D, Structural Biology. 72: 1181-1193. PMID 27841751 DOI: 10.1107/S205327331708946X |
0.518 |
|
| 2015 |
Hou J, Zheng H, Chruszcz M, Zimmerman MD, Shumilin IA, Osinski T, Demas M, Grimshaw S, Minor W. Dissecting the structural elements for the activation of β-ketoacyl-(acyl carrier protein) reductase from Vibrio cholerae. Journal of Bacteriology. PMID 26553852 DOI: 10.1128/Jb.00360-15 |
0.705 |
|
| 2015 |
Zheng H, Mandal A, Shumilin IA, Chordia MD, Panneerdoss S, Herr JC, Minor W. Sperm Lysozyme-Like Protein 1 (SLLP1), an intra-acrosomal oolemmal-binding sperm protein, reveals filamentous organization in protein crystal form. Andrology. 3: 756-71. PMID 26198801 DOI: 10.1111/Andr.12057 |
0.599 |
|
| 2015 |
Zheng H, Handing KB, Zimmerman MD, Shabalin IG, Almo SC, Minor W. X-ray crystallography over the past decade for novel drug discovery - where are we heading next? Expert Opinion On Drug Discovery. 1-15. PMID 26177814 DOI: 10.1517/17460441.2015.1061991 |
0.563 |
|
| 2015 |
Zheng H, Shabalin IG, Handing KB, Bujnicki JM, Minor W. Magnesium-binding architectures in RNA crystal structures: validation, binding preferences, classification and motif detection. Nucleic Acids Research. 43: 3789-801. PMID 25800744 DOI: 10.1093/Nar/Gkv225 |
0.541 |
|
| 2014 |
Zheng H, Hou J, Zimmerman MD, Wlodawer A, Minor W. The future of crystallography in drug discovery. Expert Opinion On Drug Discovery. 9: 125-37. PMID 24372145 DOI: 10.1517/17460441.2014.872623 |
0.593 |
|
| 2014 |
Zheng H, Chordia MD, Cooper DR, Chruszcz M, Müller P, Sheldrick GM, Minor W. Validation of metal-binding sites in macromolecular structures with the CheckMyMetal web server. Nature Protocols. 9: 156-70. PMID 24356774 DOI: 10.1038/Nprot.2013.172 |
0.7 |
|
| 2014 |
Domagalski MJ, Zheng H, Zimmerman MD, Dauter Z, Wlodawer A, Minor W. The quality and validation of structures from structural genomics. Methods in Molecular Biology (Clifton, N.J.). 1091: 297-314. PMID 24203341 DOI: 10.1007/978-1-62703-691-7_21 |
0.62 |
|
| 2014 |
Zheng H, Chordia M, Cooper D, Shabalin I, Chruszcz M, Müller P, Sheldrick G, Minor W. Check your metal - not every density blob is a water molecule Acta Crystallographica Section a Foundations and Advances. 70: C1483-C1483. DOI: 10.1107/S2053273314085167 |
0.593 |
|
| 2013 |
Luo HB, Knapik AA, Petkowski JJ, Demas M, Shumilin IA, Zheng H, Chruszcz M, Minor W. Biophysical analysis of the putative acetyltransferase SACOL2570 from methicillin-resistant Staphylococcus aureus. Journal of Structural and Functional Genomics. 14: 97-108. PMID 23963951 DOI: 10.1007/S10969-013-9158-6 |
0.687 |
|
| 2012 |
Hou J, Wojciechowska K, Zheng H, Chruszcz M, Cooper DR, Cymborowski M, Skarina T, Gordon E, Luo H, Savchenko A, Minor W. Structure of a short-chain dehydrogenase/reductase from Bacillus anthracis. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 68: 632-7. PMID 22684058 DOI: 10.1107/S1744309112017939 |
0.713 |
|
| 2012 |
Zheng H, Filippova EV, Tkaczuk KL, Dworzynski P, Chruszcz M, Porebski PJ, Wawrzak Z, Onopriyenko O, Kudritska M, Grimshaw S, Savchenko A, Anderson WF, Minor W. Crystal structures of putative phosphoglycerate kinases from B. anthracis and C. jejuni. Journal of Structural and Functional Genomics. 13: 15-26. PMID 22403005 DOI: 10.1007/S10969-012-9131-9 |
0.736 |
|
| 2010 |
Sledz P, Zheng H, Murzyn K, Chruszcz M, Zimmerman MD, Chordia MD, Joachimiak A, Minor W. New surface contacts formed upon reductive lysine methylation: improving the probability of protein crystallization. Protein Science : a Publication of the Protein Society. 19: 1395-404. PMID 20506323 DOI: 10.1002/Pro.420 |
0.706 |
|
| 2010 |
Luo HB, Zheng H, Zimmerman MD, Chruszcz M, Skarina T, Egorova O, Savchenko A, Edwards AM, Minor W. Crystal structure and molecular modeling study of N-carbamoylsarcosine amidase Ta0454 from Thermoplasma acidophilum. Journal of Structural Biology. 169: 304-11. PMID 19932181 DOI: 10.1016/J.Jsb.2009.11.008 |
0.709 |
|
| 2008 |
Chruszcz M, Zimmerman MD, Wang S, Koclega KD, Zheng H, Evdokimova E, Kudritska M, Cymborowski M, Savchenko A, Edwards A, Minor W. Function-biased choice of additives for optimization of protein crystallization - the case of the putative thioesterase PA5185 from Pseudomonas aeruginosa PAO1. Crystal Growth & Design. 8: 4054-4061. PMID 19898606 DOI: 10.1021/Cg800430F |
0.718 |
|
| 2008 |
Zheng H, Chruszcz M, Lasota P, Lebioda L, Minor W. Data mining of metal ion environments present in protein structures. Journal of Inorganic Biochemistry. 102: 1765-76. PMID 18614239 DOI: 10.1016/J.Jinorgbio.2008.05.006 |
0.715 |
|
| 2008 |
Chruszcz M, Potrzebowski W, Zimmerman MD, Grabowski M, Zheng H, Lasota P, Minor W. Analysis of solvent content and oligomeric states in protein crystals--does symmetry matter? Protein Science : a Publication of the Protein Society. 17: 623-32. PMID 18359856 DOI: 10.1110/Ps.073360508 |
0.699 |
|
| 2008 |
Jha KN, Shumilin IA, Digilio LC, Chertihin O, Zheng H, Schmitz G, Visconti PE, Flickinger CJ, Minor W, Herr JC. Biochemical and structural characterization of apolipoprotein A-I binding protein, a novel phosphoprotein with a potential role in sperm capacitation. Endocrinology. 149: 2108-20. PMID 18202122 DOI: 10.1210/En.2007-0582 |
0.556 |
|
| 2008 |
Sledz P, Zheng H, Chruszcz M, Zimmerman M, Joachimiak A, Minor W. The role of protein methylation rescue method for protein crystallization Acta Crystallographica Section a Foundations of Crystallography. 64: C231-C231. DOI: 10.1107/S0108767308092581 |
0.561 |
|
| 2007 |
Dong A, Xu X, Edwards AM, Chang C, Chruszcz M, Cuff M, Cymborowski M, Di Leo R, Egorova O, Evdokimova E, Filippova E, Gu J, Guthrie J, ... ... Zheng H, et al. In situ proteolysis for protein crystallization and structure determination. Nature Methods. 4: 1019-21. PMID 17982461 DOI: 10.1038/Nmeth1118 |
0.714 |
|
| 2007 |
Petkowski JJ, Chruszcz M, Zimmerman MD, Zheng H, Skarina T, Onopriyenko O, Cymborowski MT, Koclega KD, Savchenko A, Edwards A, Minor W. Crystal structures of TM0549 and NE1324--two orthologs of E. coli AHAS isozyme III small regulatory subunit. Protein Science : a Publication of the Protein Society. 16: 1360-7. PMID 17586771 DOI: 10.1110/Ps.072793807 |
0.714 |
|
| 2007 |
Zuo Y, Zheng H, Wang Y, Chruszcz M, Cymborowski M, Skarina T, Savchenko A, Malhotra A, Minor W. Crystal structure of RNase T, an exoribonuclease involved in tRNA maturation and end turnover. Structure (London, England : 1993). 15: 417-28. PMID 17437714 DOI: 10.1016/J.Str.2007.02.004 |
0.68 |
|
| 2007 |
Zheng H, Gawlicka-Chruszcz A, Cymborowski M, Minor W. trans-1-Hydroxycyclopentan-2-aminium chloride Acta Crystallographica Section E Structure Reports Online. 63: o2697-o2698. DOI: 10.1107/S1600536807018958 |
0.541 |
|
| 2006 |
Gawlicka-Chruszcz A, Zheng H, Hyacinth M, Cymborowski M, Sabat M, Minor W. Crystal structure of 2,6-dichlorobenzaldehyde, C7H4Cl2O Zeitschrift Fur Kristallographie-New Crystal Structures. 221: 545-546. DOI: 10.1524/Ncrs.2006.0192 |
0.616 |
|
| 2006 |
Zimmerman MD, Chruszcz M, Cymborowski M, Zheng H, Minor W. Disodium 4-nitrophenylphosphate hexahydrate Acta Crystallographica Section E Structure Reports Online. 62: m884-m886. DOI: 10.1107/S160053680600941X |
0.513 |
|
| 2005 |
Chruszcz M, Zheng H, Cymborowski M, Gawlicka-Chruszcz A, Minor W. 3-(Morpholinium-1-yl)propanesulfonate Acta Crystallographica Section E Structure Reports Online. 61: o3190-o3191. DOI: 10.1107/S1600536805027728 |
0.567 |
|
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