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Marcos R Betancourt - Publications

Affiliations: 
BMCC CUNY 
Area:
Computational Physics
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23 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2011 Betancourt MR. Optimization of Monte Carlo trial moves for protein simulations. The Journal of Chemical Physics. 134: 014104. PMID 21218994 DOI: 10.1063/1.3515960  0.454
2011 Betancourt MR. On the Persistence Length of Denatured Proteins Biophysical Journal. 100. DOI: 10.1016/J.Bpj.2010.12.2218  0.451
2010 Betancourt MR. Comparison between molecular dynamic based and knowledge based potentials for protein side chains. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 17: 943-52. PMID 20632873 DOI: 10.1089/Cmb.2009.0152  0.46
2010 Betancourt MR. Empirical model of residue contact probabilities for polypeptides. The Journal of Chemical Physics. 132: 085101. PMID 20192316 DOI: 10.1063/1.3328613  0.446
2010 Betancourt MR. Orientation Dependent Residue Energies For Proteins Coarse-Grained From Atomic Force Fields Biophysical Journal. 98. DOI: 10.1016/J.Bpj.2009.12.157  0.577
2009 Betancourt MR. Coarse-grained protein model with residue orientation energies derived from atomic force fields. The Journal of Physical Chemistry. B. 113: 14824-30. PMID 19817469 DOI: 10.1021/Jp906710C  0.57
2009 Betancourt MR, Omovie SJ. Pairwise energies for polypeptide coarse-grained models derived from atomic force fields. The Journal of Chemical Physics. 130: 195103. PMID 19466867 DOI: 10.1063/1.3137045  0.497
2009 Betancourt MR. Another look at the conditions for the extraction of protein knowledge-based potentials. Proteins. 76: 72-85. PMID 19089977 DOI: 10.1002/Prot.22320  0.514
2009 Betancourt MR. Protein Coarse-Grain Potentials for Folding Simulations Biophysical Journal. 96. DOI: 10.1016/J.Bpj.2008.12.3094  0.511
2008 Betancourt MR. Knowledge-based potential for the polypeptide backbone. The Journal of Physical Chemistry. B. 112: 5058-69. PMID 18373361 DOI: 10.1021/Jp076906+  0.468
2005 Betancourt MR. Efficient Monte Carlo trial moves for polypeptide simulations. The Journal of Chemical Physics. 123: 174905. PMID 16375567 DOI: 10.1063/1.2102896  0.388
2004 Betancourt MR, Skolnick J. Local propensities and statistical potentials of backbone dihedral angles in proteins Journal of Molecular Biology. 342: 635-649. PMID 15327961 DOI: 10.1016/J.Jmb.2004.06.091  0.563
2003 Betancourt MR. A reduced protein model with accurate native-structure identification ability. Proteins. 53: 889-907. PMID 14635131 DOI: 10.1002/Prot.10498  0.551
2002 Betancourt MR, Thirumalai D. Protein sequence design by energy landscaping Journal of Physical Chemistry B. 106: 599-609. DOI: 10.1021/Jp012014C  0.595
2001 Skolnick J, Kolinski A, Kihara D, Betancourt M, Rotkiewicz P, Boniecki M. Ab initio protein structure prediction via a combination of threading, lattice folding, clustering, and structure refinement Proteins: Structure, Function and Genetics. 45: 149-156. PMID 11835492 DOI: 10.1002/Prot.1172  0.609
2001 Betancourt MR, Skolnick J. Universal similarity measure for comparing protein structures Biopolymers. 59: 305-309. PMID 11514933 DOI: 10.1002/1097-0282(20011015)59:5<305::Aid-Bip1027>3.0.Co;2-6  0.585
2001 Kolinski A, Betancourt MR, Kihara D, Rotkiewicz P, Skolnick J. Generalized comparative modeling (GENECOMP): A combination of sequence comparison, threading, and lattice modeling for protein structure prediction and refinement Proteins: Structure, Function and Genetics. 44: 133-149. PMID 11391776 DOI: 10.1002/Prot.1080  0.597
2001 Betancourt MR, Skolnick J. Finding the Needle in a Haystack: Educing Native Folds from Ambiguous Ab Initio Protein Structure Predictions Journal of Computational Chemistry. 22: 339-353. DOI: 10.1002/1096-987X(200102)22:3<339::Aid-Jcc1006>3.0.Co;2-R  0.574
1999 Betancourt MR, Thirumalai D. Exploring the kinetic requirements for enhancement of protein folding rates in the GroEL cavity Journal of Molecular Biology. 287: 627-644. PMID 10092464 DOI: 10.1006/Jmbi.1999.2591  0.601
1999 Betancourt MR, Thirumalai D. Pair potentials for protein folding: Choice of reference states and sensitivity of predicted native states to variations in the interaction schemes Protein Science. 8: 361-369. PMID 10048329 DOI: 10.1110/Ps.8.2.361  0.58
1998 Klimov DK, Betancourt MR, Thirumalai D. Virtual atom representation of hydrogen bonds in minimal off-lattice models of α helices: Effect on stability, cooperativity and kinetics Folding and Design. 3: 481-496. PMID 9889160 DOI: 10.1016/S1359-0278(98)00065-0  0.538
1998 Betancourt MR. Smoothing the landscapes of protein folding: Insights from a minimal model Journal of Chemical Physics. 109: 1545-1554. DOI: 10.1063/1.476706  0.469
1995 Betancourt MR, Onuchic JN. Kinetics Of Proteinlike Models : The Energy Landscape Factors That Determine Folding Journal of Chemical Physics. 103: 773-787. DOI: 10.1063/1.470109  0.585
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