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Binh Nguyen - Publications

Affiliations: 
2007- Biochemistry and Molecular Biophysics Washington University School of Medicine, St. Louis, MO, United States 
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40 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Chadda A, Nguyen B, Lohman TM, Galburt EA. Structural Basis for Dimerization and Activation of UvrD-family Helicases. Biorxiv : the Preprint Server For Biology. PMID 39282289 DOI: 10.1101/2024.09.05.611425  0.532
2024 Nguyen B, Hsieh J, Fischer CJ, Lohman TM. Subunit Communication within Dimeric SF1 DNA Helicases. Journal of Molecular Biology. 168578. PMID 38648969 DOI: 10.1016/j.jmb.2024.168578  0.805
2023 Chadda A, Kozlov AG, Nguyen B, Lohman TM, Galburt EA. Mycobacterium tuberculosis Ku stimulates multi-round DNA unwinding by UvrD1 monomers. Journal of Molecular Biology. 168367. PMID 37972687 DOI: 10.1016/j.jmb.2023.168367  0.815
2023 Mersch KN, Sokoloski JE, Nguyen B, Galletto R, Lohman TM. "Helicase" Activity promoted through dynamic interactions between a ssDNA translocase and a diffusing SSB protein. Proceedings of the National Academy of Sciences of the United States of America. 120: e2216777120. PMID 37011199 DOI: 10.1073/pnas.2216777120  0.796
2022 Nguyen QH, Tran HV, Nguyen BP, Do TTT. Identifying Transcription Factors That Prefer Binding to Methylated DNA Using Reduced -Gap Dipeptide Composition. Acs Omega. 7: 32322-32330. PMID 36119976 DOI: 10.1021/acsomega.2c03696  0.43
2022 Kozlov AG, Cheng X, Zhang H, Shinn MK, Weiland E, Nguyen B, Shkel IA, Zytkiewicz E, Finkelstein IJ, Record MT, Lohman TM. How Glutamate Promotes Liquid-liquid Phase Separation and DNA Binding Cooperativity of E. coli SSB Protein. Journal of Molecular Biology. 434: 167562. PMID 35351518 DOI: 10.1016/j.jmb.2022.167562  0.777
2022 Chadda A, Jensen D, Tomko EJ, Ruiz Manzano A, Nguyen B, Lohman TM, Galburt EA. DNA repair helicase UvrD1 is activated by redox-dependent dimerization via a 2B domain cysteine. Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 35173050 DOI: 10.1073/pnas.2114501119  0.829
2021 Nguyen B, Shinn MK, Weiland E, Lohman TM. Regulation of E. coli Rep helicase activity by PriC. Journal of Molecular Biology. 433: 167072. PMID 34081984 DOI: 10.1016/j.jmb.2021.167072  0.845
2020 Nguyen B, Weiland E, Lohman TM. Activation of Rep Helicase by PriC Biophysical Journal. 118: 375a. DOI: 10.1016/j.bpj.2019.11.2147  0.556
2019 Nguyen BP, Nguyen QH, Doan-Ngoc GN, Nguyen-Vo TH, Rahardja S. iProDNA-CapsNet: identifying protein-DNA binding residues using capsule neural networks. Bmc Bioinformatics. 20: 634. PMID 31881828 DOI: 10.1186/s12859-019-3295-2  0.496
2019 Ordabayev YA, Nguyen B, Kozlov AG, Jia H, Lohman TM. UvrD helicase activation by MutL involves rotation of its 2B subdomain. Proceedings of the National Academy of Sciences of the United States of America. PMID 31363055 DOI: 10.1073/pnas.1905513116  0.788
2019 Shinn MK, Kozlov AG, Nguyen B, Bujalowski WM, Lohman TM. Are the intrinsically disordered linkers involved in SSB binding to accessory proteins? Nucleic Acids Research. PMID 31329947 DOI: 10.1093/nar/gkz606  0.78
2019 Nguyen B, Ciuba MA, Kozlov AG, Levitus M, Lohman TM. Protein Environment and DNA Orientation Affect Protein-Induced Cy3 Fluorescence Enhancement. Biophysical Journal. PMID 31235181 DOI: 10.1016/J.Bpj.2019.05.026  0.747
2019 Makurath MA, Whitley KD, Nguyen B, Lohman TM, Chemla YR. Regulation of Rep helicase unwinding by an auto-inhibitory subdomain. Nucleic Acids Research. PMID 30690484 DOI: 10.1093/Nar/Gkz023  0.654
2018 Ordabayev YA, Nguyen B, Niedziela-Majka A, Lohman TM. Regulation of UvrD Helicase Activity by MutL. Journal of Molecular Biology. PMID 30171840 DOI: 10.1016/j.jmb.2018.08.022  0.803
2017 Nguyen B, Ordabayev Y, Sokoloski JE, Weiland E, Lohman TM. Large domain movements upon UvrD dimerization and helicase activation. Proceedings of the National Academy of Sciences of the United States of America. PMID 29087333 DOI: 10.1073/pnas.1712882114  0.786
2014 Nagle PS, McKeever C, Rodriguez F, Nguyen B, Wilson WD, Rozas I. Unexpected DNA affinity and sequence selectivity through core rigidity in guanidinium-based minor groove binders. Journal of Medicinal Chemistry. 57: 7663-72. PMID 25158031 DOI: 10.1021/jm5008006  0.442
2014 Nguyen B, Sokoloski J, Galletto R, Elson EL, Wold MS, Lohman TM. Diffusion of human replication protein A along single-stranded DNA. Journal of Molecular Biology. 426: 3246-61. PMID 25058683 DOI: 10.1016/J.Jmb.2014.07.014  0.82
2014 Nguyen B, Sokoloski J, Wold MS, Galletto R, Elson EL, Lohman TM. Human Replication Protein a (RPA) Can Diffuse Along Single Stranded DNA Biophysical Journal. 106: 73a. DOI: 10.1016/J.Bpj.2013.11.480  0.839
2013 Antony E, Weiland E, Yuan Q, Manhart CM, Nguyen B, Kozlov AG, McHenry CS, Lohman TM. Multiple C-terminal tails within a single E. coli SSB homotetramer coordinate DNA replication and repair. Journal of Molecular Biology. 425: 4802-19. PMID 24021816 DOI: 10.1016/J.Jmb.2013.08.021  0.844
2013 Wang S, Kumar A, Aston K, Nguyen B, Bashkin JK, Boykin DW, Wilson WD. Different thermodynamic signatures for DNA minor groove binding with changes in salt concentration and temperature. Chemical Communications (Cambridge, England). 49: 8543-5. PMID 23945614 DOI: 10.1039/C3Cc44569K  0.338
2012 Antony E, Kozlov AG, Nguyen B, Lohman TM. Plasmodium falciparum SSB tetramer binds single-stranded DNA only in a fully wrapped mode. Journal of Molecular Biology. 420: 284-95. PMID 22543238 DOI: 10.1016/J.Jmb.2012.04.022  0.834
2012 Nagle PS, Rodriguez F, Nguyen B, Wilson WD, Rozas I. High DNA affinity of a series of peptide linked diaromatic guanidinium-like derivatives. Journal of Medicinal Chemistry. 55: 4397-406. PMID 22497334 DOI: 10.1021/jm300296f  0.372
2010 Nagle PS, Quinn SJ, Kelly JM, O'Donovan DH, Khan AR, Rodriguez F, Nguyen B, Wilson WD, Rozas I. Understanding the DNA binding of novel non-symmetrical guanidinium/2-aminoimidazolinium derivatives. Organic & Biomolecular Chemistry. 8: 5558-67. PMID 20949223 DOI: 10.1039/C0Ob00428F  0.461
2010 Nguyen B, Wilson WD. The effects of hairpin loops on ligand-DNA interactions. The Journal of Physical Chemistry. B. 113: 14329-35. PMID 19778070 DOI: 10.1021/jp904830m  0.374
2009 Lajiness J, Sielaff A, Mackay H, Brown T, Kluza J, Nguyen B, Wilson WD, Lee M, Hartley JA. Polyamide curvature and DNA sequence selective recognition: use of 4-aminobenzamide to adjust curvature. Medicinal Chemistry (ShāRiqah (United Arab Emirates)). 5: 216-26. PMID 19442211  0.368
2009 Westrate L, Mackay H, Brown T, Nguyen B, Kluza J, Wilson WD, Lee M, Hartley JA. Effects of the N-terminal acylamido group of imidazole- and pyrrole-containing polyamides on DNA sequence specificity and binding affinity. Biochemistry. 48: 5679-88. PMID 19419200 DOI: 10.1021/bi900242t  0.338
2009 Glass LS, Nguyen B, Goodwin KD, Dardonville C, Wilson WD, Long EC, Georgiadis MM. Crystal structure of a trypanocidal 4,4'-bis(imidazolinylamino)diphenylamine bound to DNA. Biochemistry. 48: 5943-52. PMID 19405506 DOI: 10.1021/Bi900204W  0.39
2009 Nguyen B, Neidle S, Wilson WD. A role for water molecules in DNA-ligand minor groove recognition. Accounts of Chemical Research. 42: 11-21. PMID 18798655 DOI: 10.1021/Ar800016Q  0.437
2008 Rodríguez F, Rozas I, Kaiser M, Brun R, Nguyen B, Wilson WD, García RN, Dardonville C. New bis(2-aminoimidazoline) and bisguanidine DNA minor groove binders with potent in vivo antitrypanosomal and antiplasmodial activity. Journal of Medicinal Chemistry. 51: 909-23. PMID 18247550 DOI: 10.1021/jm7013088  0.356
2008 Mackay H, Brown T, Sexton JS, Kotecha M, Nguyen B, Wilson WD, Kluza J, Savic B, O'Hare C, Hochhauser D, Lee M, Hartley JA. Targeting the inverted CCAAT Box-2 of the topoisomerase IIalpha gene: DNA sequence selective recognition by a polyamide-intercalator as a staggered dimer. Bioorganic & Medicinal Chemistry. 16: 2093-102. PMID 17977733 DOI: 10.1016/j.bmc.2007.10.059  0.407
2007 Brown T, Taherbhai Z, Sexton J, Sutterfield A, Turlington M, Jones J, Stallings L, Stewart M, Buchmueller K, Mackay H, O'hare C, Kluza J, Nguyen B, Wilson D, Lee M, et al. Synthesis and biophysical evaluation of minor-groove binding C-terminus modified pyrrole and imidazole triamide analogs of distamycin. Bioorganic & Medicinal Chemistry. 15: 474-83. PMID 17035029 DOI: 10.1016/j.bmc.2006.09.037  0.337
2005 Nguyen B, Stanek J, Wilson WD. Binding-linked protonation of a DNA minor-groove agent. Biophysical Journal. 90: 1319-28. PMID 16299076 DOI: 10.1529/biophysj.105.071381  0.377
2005 Wilson WD, Nguyen B, Tanious FA, Mathis A, Hall JE, Stephens CE, Boykin DW. Dications that target the DNA minor groove: compound design and preparation, DNA interactions, cellular distribution and biological activity. Current Medicinal Chemistry. Anti-Cancer Agents. 5: 389-408. PMID 16101490 DOI: 10.2174/1568011054222319  0.515
2005 Buchmueller KL, Staples AM, Howard CM, Horick SM, Uthe PB, Le NM, Cox KK, Nguyen B, Pacheco KA, Wilson WD, Lee M. Extending the language of DNA molecular recognition by polyamides: unexpected influence of imidazole and pyrrole arrangement on binding affinity and specificity. Journal of the American Chemical Society. 127: 742-50. PMID 15643900 DOI: 10.1021/ja044359p  0.345
2004 Henry JA, Le NM, Nguyen B, Howard CM, Bailey SL, Horick SM, Buchmueller KL, Kotecha M, Hochhauser D, Hartley JA, Wilson WD, Lee M. Targeting the inverted CCAAT box 2 in the topoisomerase IIalpha promoter by JH-37, an imidazole-pyrrole polyamide hairpin: design, synthesis, molecular biology, and biophysical studies. Biochemistry. 43: 12249-57. PMID 15379563 DOI: 10.1021/Bi048785Z  0.363
2004 Lacy ER, Nguyen B, Le M, Cox KK, OHare C, Hartley JA, Lee M, Wilson WD. Energetic basis for selective recognition of T*G mismatched base pairs in DNA by imidazole-rich polyamides. Nucleic Acids Research. 32: 2000-7. PMID 15064359 DOI: 10.1093/nar/gkh515  0.344
2004 Nguyen B, Hamelberg D, Bailly C, Colson P, Stanek J, Brun R, Neidle S, Wilson WD. Characterization of a Novel DNA Minor-Groove Complex Biophysical Journal. 86: 1028-1041. PMID 14747338 DOI: 10.1016/S0006-3495(04)74178-8  0.468
2002 Nguyen B, Lee MPH, Hamelberg D, Joubert A, Bailly C, Brun R, Neidle S, Wilson WD. Strong binding in the DNA minor groove by an aromatic diamidine with a shape that does not match the curvature of the groove Journal of the American Chemical Society. 124: 13680-13681. PMID 12431090 DOI: 10.1021/Ja027953C  0.455
2002 Nguyen B, Tardy C, Bailly C, Colson P, Houssier C, Kumar A, Boykin DW, Wilson WD. Influence of compound structure on affinity, sequence selectivity, and mode of binding to DNA for unfused aromatic dications related to furamidine Biopolymers. 63: 281-297. PMID 11877739 DOI: 10.1002/Bip.10073  0.419
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