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Sandra L. Rodriguez-Zas, Ph.D. - Publications

Affiliations: 
University of Illinois, Urbana-Champaign, Urbana-Champaign, IL 
Area:
Genetic architecture of health, social behavior, agricultural and other complex characteristics; biostatistics and informatics
Website:
http://ansci.illinois.edu/directory/rodrgzzs
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106 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Keever MR, Zhang P, Bolt CR, Antonson AM, Rymut HE, Caputo MP, Houser AK, Hernandez AG, Southey BR, Rund LA, Johnson RW, Rodriguez-Zas SL. Lasting and Sex-Dependent Impact of Maternal Immune Activation on Molecular Pathways of the Amygdala. Frontiers in Neuroscience. 14: 774. PMID 32848554 DOI: 10.3389/Fnins.2020.00774  0.36
2020 Pinedo P, Santos JEP, Chebel RC, Galvão KN, Schuenemann GM, Bicalho RC, Gilbert RO, Rodriguez-Zas SL, Seabury CM, Rosa G, Thatcher W. Associations of reproductive indices with fertility outcomes, milk yield, and survival in Holstein cows. Journal of Dairy Science. PMID 32359989 DOI: 10.3168/Jds.2019-17867  0.324
2020 Southey BR, Rodriguez-Zas SL, Rhodes JS, Sweedler JV. Characterization of the prohormone complement in Amphiprion and related fish species integrating genome and transcriptome assemblies. Plos One. 15: e0228562. PMID 32163422 DOI: 10.1371/Journal.Pone.0228562  0.36
2019 Zhang P, Moye LS, Southey BR, Dripps I, Sweedler JV, Pradhan A, Rodriguez-Zas SL. Opioid-Induced Hyperalgesia Is Associated with Dysregulation of Circadian Rhythm and Adaptive Immune Pathways in the Mouse Trigeminal Ganglia and Nucleus Accumbens. Molecular Neurobiology. PMID 31129808 DOI: 10.1007/S12035-019-01650-5  0.33
2019 Ko Y, Kim J, Rodriguez-Zas SL. Markov chain Monte Carlo simulation of a Bayesian mixture model for gene network inference. Genes & Genomics. PMID 30741379 DOI: 10.1007/S13258-019-00789-8  0.383
2018 Jeong H, Moye LS, Southey BR, Hernandez AG, Dripps I, Romanova EV, Rubakhin SS, Sweedler JV, Pradhan AA, Rodriguez-Zas SL. Gene Network Dysregulation in the Trigeminal Ganglia and Nucleus Accumbens of a Model of Chronic Migraine-Associated Hyperalgesia. Frontiers in Systems Neuroscience. 12: 63. PMID 30618656 DOI: 10.3389/Fnsys.2018.00063  0.327
2018 Goncalves TM, Southey BR, Rodriguez-Zas SL. Interplay Between Amphetamine and Activity Level in Gene Networks of the Mouse Striatum. Bioinformatics and Biology Insights. 12: 1177932218815152. PMID 30559594 DOI: 10.1177/1177932218815152  0.36
2018 Sorokina AM, Saul M, Goncalves TM, Gogola JV, Majdak P, Rodriguez-Zas SL, Rhodes JS. Striatal transcriptome of a mouse model of ADHD reveals a pattern of synaptic remodeling. Plos One. 13: e0201553. PMID 30110355 DOI: 10.1371/Journal.Pone.0201553  0.311
2018 Zhang P, Rhodes JS, Garland T, Perez SD, Southey BR, Rodriguez-Zas SL. Brain region-dependent gene networks associated with selective breeding for increased voluntary wheel-running behavior. Plos One. 13: e0201773. PMID 30071007 DOI: 10.1371/Journal.Pone.0201773  0.373
2017 Agrawal A, Khan MJ, Graugnard DE, Vailati-Riboni M, Rodriguez-Zas SL, Osorio JS, Loor JJ. Prepartal Energy Intake Alters Blood Polymorphonuclear Leukocyte Transcriptome During the Peripartal Period in Holstein Cows. Bioinformatics and Biology Insights. 11: 1177932217704667. PMID 28579762 DOI: 10.1177/1177932217704667  0.318
2016 Caetano-Anollés K, Rhodes JS, Garland T, Perez SD, Hernandez AG, Southey BR, Rodriguez-Zas SL. Cerebellum Transcriptome of Mice Bred for High Voluntary Activity Offers Insights into Locomotor Control and Reward-Dependent Behaviors. Plos One. 11: e0167095. PMID 27893846 DOI: 10.1371/Journal.Pone.0167095  0.387
2016 Gonzalez-Pena D, Nixon SE, Southey BR, Lawson MA, McCusker RH, Hernandez AG, Dantzer R, Kelley KW, Rodriguez-Zas SL. Differential Transcriptome Networks between IDO1-Knockout and Wild-Type Mice in Brain Microglia and Macrophages. Plos One. 11: e0157727. PMID 27314674 DOI: 10.1371/Journal.Pone.0157727  0.323
2016 Gonzalez-Pena D, Nixon SE, O'Connor JC, Southey BR, Lawson MA, McCusker RH, Borras T, Machuca D, Hernandez AG, Dantzer R, Kelley KW, Rodriguez-Zas SL. Microglia Transcriptome Changes in a Model of Depressive Behavior after Immune Challenge. Plos One. 11: e0150858. PMID 26959683 DOI: 10.1371/Journal.Pone.0150858  0.343
2016 Seo M, Caetano-Anolles K, Rodriguez-Zas S, Ka S, Jeong JY, Park S, Kim MJ, Nho WG, Cho S, Kim H, Lee HJ. Comprehensive identification of sexually dimorphic genes in diverse cattle tissues using RNA-seq. Bmc Genomics. 17: 81. PMID 26818975 DOI: 10.1186/S12864-016-2400-4  0.326
2016 Southey BR, Zhu P, Carr-Markell MK, Liang ZS, Zayed A, Li R, Robinson GE, Rodriguez-Zas SL. Characterization of Genomic Variants Associated with Scout and Recruit Behavioral Castes in Honey Bees Using Whole-Genome Sequencing. Plos One. 11: e0146430. PMID 26784945 DOI: 10.1371/Journal.Pone.0146430  0.356
2015 Wheeler MM, Ament SA, Rodriguez-Zas SL, Southey B, Robinson GE. Diet and endocrine effects on behavioral maturation-related gene expression in the pars intercerebralis of the honey bee brain. The Journal of Experimental Biology. PMID 26567353 DOI: 10.1242/Jeb.119420  0.343
2015 Caetano-Anolles K, Seo M, Rodriguez-Zas S, Oh JD, Han JY, Lee K, Park TS, Shin S, Jiao Jiao Z, Ghosh M, Jeong DK, Cho S, Kim H, Song KD, Lee HK. Comprehensive Identification of Sexual Dimorphism-Associated Differentially Expressed Genes in Two-Way Factorial Designed RNA-Seq Data on Japanese Quail (Coturnix coturnix japonica). Plos One. 10: e0139324. PMID 26418419 DOI: 10.1371/Journal.Pone.0139324  0.405
2015 Moisá SJ, Shike DW, Shoup L, Rodriguez-Zas SL, Loor JJ. Maternal Plane of Nutrition during Late Gestation and Weaning Age Alter Angus × Simmental Offspring Longissimus Muscle Transcriptome and Intramuscular Fat. Plos One. 10: e0131478. PMID 26153887 DOI: 10.1371/Journal.Pone.0131478  0.32
2015 Shahzad K, Akbar H, Vailati-Riboni M, Basiricò L, Morera P, Rodriguez-Zas SL, Nardone A, Bernabucci U, Loor JJ. The effect of calving in the summer on the hepatic transcriptome of Holstein cows during the peripartal period. Journal of Dairy Science. 98: 5401-13. PMID 26074246 DOI: 10.3168/Jds.2015-9409  0.387
2015 Daigneault BW, McNamara KA, Purdy PH, Krisher RL, Knox RV, Rodriguez-Zas SL, Miller DJ. Enhanced fertility prediction of cryopreserved boar spermatozoa using novel sperm function assessment. Andrology. 3: 558-68. PMID 25914302 DOI: 10.1111/Andr.12035  0.303
2015 Caetano-Anollés K, Mishra S, Rodriguez-Zas SL. Synergistic and antagonistic interplay between myostatin gene expression and physical activity levels on gene expression patterns in triceps Brachii muscles of C57/BL6 mice. Plos One. 10: e0116828. PMID 25710176 DOI: 10.1371/Journal.Pone.0116828  0.376
2015 Nixon SE, González-Peña D, Lawson MA, McCusker RH, Hernandez AG, O'Connor JC, Dantzer R, Kelley KW, Rodriguez-Zas SL. Analytical workflow profiling gene expression in murine macrophages. Journal of Bioinformatics and Computational Biology. 13: 1550010. PMID 25708305 DOI: 10.1142/S0219720015500109  0.392
2014 Liang ZS, Mattila HR, Rodriguez-Zas SL, Southey BR, Seeley TD, Robinson GE. Comparative brain transcriptomic analyses of scouting across distinct behavioural and ecological contexts in honeybees. Proceedings. Biological Sciences / the Royal Society. 281. PMID 25355476 DOI: 10.1098/Rspb.2014.1868  0.37
2014 Shahzad K, Bionaz M, Trevisi E, Bertoni G, Rodriguez-Zas SL, Loor JJ. Integrative analyses of hepatic differentially expressed genes and blood biomarkers during the peripartal period between dairy cows overfed or restricted-fed energy prepartum. Plos One. 9: e99757. PMID 24914544 DOI: 10.1371/Journal.Pone.0099757  0.342
2014 Naeem A, Drackley JK, Lanier JS, Everts RE, Rodriguez-Zas SL, Loor JJ. Ruminal epithelium transcriptome dynamics in response to plane of nutrition and age in young Holstein calves. Functional & Integrative Genomics. 14: 261-73. PMID 24318765 DOI: 10.1007/S10142-013-0351-2  0.355
2014 Marjani SL, Carter MG, Sung L, Inoue K, Rodriguez-Zas S, Wang L, Yu H, Shen H, Cheng T, Yang X, Tian XC. 42 EFFECTS OF TRICHOSTATIN A TREATMENT ON GENE EXPRESSION OF CLONED MOUSE 2-CELL AND BLASTOCYST STAGE EMBRYOS Reproduction, Fertility and Development. 26: 135. DOI: 10.1071/Rdv26N1Ab42  0.347
2013 Serão NVL, González-Peña D, Beever JE, Bollero GA, Southey BR, Faulkner DB, Rodriguez-Zas SL. Bivariate genome-wide association analysis of the growth and intake components of feed efficiency Plos One. 8: e78530. PMID 24205251 DOI: 10.1371/Journal.Pone.0078530  0.302
2013 Serão NV, González-Peña D, Beever JE, Faulkner DB, Southey BR, Rodriguez-Zas SL. Single nucleotide polymorphisms and haplotypes associated with feed efficiency in beef cattle. Bmc Genetics. 14: 94. PMID 24066663 DOI: 10.1186/1471-2156-14-94  0.304
2013 Moisá SJ, Shike DW, Graugnard DE, Rodriguez-Zas SL, Everts RE, Lewin HA, Faulkner DB, Berger LL, Loor JJ. Bioinformatics analysis of transcriptome dynamics during growth in angus cattle longissimus muscle. Bioinformatics and Biology Insights. 7: 253-70. PMID 23943656 DOI: 10.4137/Bbi.S12328  0.313
2013 Zhao W, Shahzad K, Jiang M, Graugnard DE, Rodriguez-Zas SL, Luo J, Loor JJ, Hurley WL. Bioinformatics and Gene Network Analyses of the Swine Mammary Gland Transcriptome during Late Gestation. Bioinformatics and Biology Insights. 7: 193-216. PMID 23908586 DOI: 10.4137/Bbi.S12205  0.347
2013 Wheeler MM, Ament SA, Rodriguez-Zas SL, Robinson GE. Brain gene expression changes elicited by peripheral vitellogenin knockdown in the honey bee. Insect Molecular Biology. 22: 562-73. PMID 23889463 DOI: 10.1111/Imb.12043  0.398
2013 Delfino KR, Rodriguez-Zas SL. Transcription factor-microRNA-target gene networks associated with ovarian cancer survival and recurrence. Plos One. 8: e58608. PMID 23554906 DOI: 10.1371/Journal.Pone.0058608  0.615
2013 Akbar H, Bionaz M, Carlson DB, Rodriguez-Zas SL, Everts RE, Lewin HA, Drackley JK, Loor JJ. Feed restriction, but not l-carnitine infusion, alters the liver transcriptome by inhibiting sterol synthesis and mitochondrial oxidative phosphorylation and increasing gluconeogenesis in mid-lactation dairy cows. Journal of Dairy Science. 96: 2201-13. PMID 23462174 DOI: 10.3168/Jds.2012-6036  0.349
2012 Sadeque A, Serão NV, Southey BR, Delfino KR, Rodriguez-Zas SL. Identification and characterization of alternative exon usage linked glioblastoma multiforme survival. Bmc Medical Genomics. 5: 59. PMID 23206951 DOI: 10.1186/1755-8794-5-59  0.679
2012 Porter KI, Southey BR, Sweedler JV, Rodriguez-Zas SL. First survey and functional annotation of prohormone and convertase genes in the pig. Bmc Genomics. 13: 582. PMID 23153308 DOI: 10.1186/1471-2164-13-582  0.401
2012 Groenen MA, Archibald AL, Uenishi H, Tuggle CK, Takeuchi Y, Rothschild MF, Rogel-Gaillard C, Park C, Milan D, Megens HJ, Li S, Larkin DM, Kim H, Frantz LA, Caccamo M, ... ... Rodriguez-Zas S, et al. Analyses of pig genomes provide insight into porcine demography and evolution. Nature. 491: 393-8. PMID 23151582 DOI: 10.1038/Nature11622  0.342
2012 Ament SA, Blatti CA, Alaux C, Wheeler MM, Toth AL, Le Conte Y, Hunt GJ, Guzmán-Novoa E, Degrandi-Hoffman G, Uribe-Rubio JL, Amdam GV, Page RE, Rodriguez-Zas SL, Robinson GE, Sinha S. New meta-analysis tools reveal common transcriptional regulatory basis for multiple determinants of behavior. Proceedings of the National Academy of Sciences of the United States of America. 109: E1801-10. PMID 22691501 DOI: 10.1073/Pnas.1205283109  0.35
2012 Piantoni P, Daniels KM, Everts RE, Rodriguez-Zas SL, Lewin HA, Hurley WL, Akers RM, Loor JJ. Level of nutrient intake affects mammary gland gene expression profiles in preweaned Holstein heifers. Journal of Dairy Science. 95: 2550-61. PMID 22541482 DOI: 10.3168/Jds.2011-4539  0.369
2012 Ament SA, Wang Y, Chen CC, Blatti CA, Hong F, Liang ZS, Negre N, White KP, Rodriguez-Zas SL, Mizzen CA, Sinha S, Zhong S, Robinson GE. The transcription factor ultraspiracle influences honey bee social behavior and behavior-related gene expression. Plos Genetics. 8: e1002596. PMID 22479195 DOI: 10.1371/Journal.Pgen.1002596  0.375
2012 Bionaz M, Periasamy K, Rodriguez-Zas SL, Hurley WL, Loor JJ. A novel dynamic impact approach (DIA) for functional analysis of time-course omics studies: validation using the bovine mammary transcriptome. Plos One. 7: e32455. PMID 22438877 DOI: 10.1371/Journal.Pone.0032455  0.373
2012 Bionaz M, Periasamy K, Rodriguez-Zas SL, Everts RE, Lewin HA, Hurley WL, Loor JJ. Old and new stories: revelations from functional analysis of the bovine mammary transcriptome during the lactation cycle. Plos One. 7: e33268. PMID 22428004 DOI: 10.1371/Journal.Pone.0033268  0.355
2012 Monaco E, Bionaz M, Rodriguez-Zas S, Hurley WL, Wheeler MB. Transcriptomics comparison between porcine adipose and bone marrow mesenchymal stem cells during in vitro osteogenic and adipogenic differentiation Plos One. 7. PMID 22412878 DOI: 10.1371/Journal.Pone.0032481  0.326
2012 Liang ZS, Nguyen T, Mattila HR, Rodriguez-Zas SL, Seeley TD, Robinson GE. Molecular determinants of scouting behavior in honey bees. Science (New York, N.Y.). 335: 1225-8. PMID 22403390 DOI: 10.1126/Science.1213962  0.304
2012 Chen K, Hawken R, Flickinger GH, Rodriguez-Zas SL, Rund LA, Wheeler MB, Abrahamsen M, Rutherford MS, Beever JE, Schook LB. Association of the porcine transforming growth factor beta type I receptor (TGFBR1) gene with growth and carcass traits. Animal Biotechnology. 23: 43-63. PMID 22292700 DOI: 10.1080/10495398.2011.630897  0.306
2012 Zayed A, Naeger NL, Rodriguez-Zas SL, Robinson GE. Common and novel transcriptional routes to behavioral maturation in worker and male honey bees. Genes, Brain, and Behavior. 11: 253-61. PMID 22050787 DOI: 10.1111/J.1601-183X.2011.00750.X  0.326
2012 Lutz CC, Rodriguez-Zas SL, Fahrbach SE, Robinson GE. Transcriptional response to foraging experience in the honey bee mushroom bodies. Developmental Neurobiology. 72: 153-66. PMID 21634017 DOI: 10.1002/Dneu.20929  0.358
2011 Ament SA, Chan QW, Wheeler MM, Nixon SE, Johnson SP, Rodriguez-Zas SL, Foster LJ, Robinson GE. Mechanisms of stable lipid loss in a social insect. The Journal of Experimental Biology. 214: 3808-21. PMID 22031746 DOI: 10.1242/Jeb.060244  0.338
2011 Chandrasekaran S, Ament SA, Eddy JA, Rodriguez-Zas SL, Schatz BR, Price ND, Robinson GE. Behavior-specific changes in transcriptional modules lead to distinct and predictable neurogenomic states. Proceedings of the National Academy of Sciences of the United States of America. 108: 18020-5. PMID 21960440 DOI: 10.1073/Pnas.1114093108  0.341
2011 Cohen-Zinder M, Donthu R, Larkin DM, Kumar CG, Rodriguez-Zas SL, Andropolis KE, Oliveira R, Lewin HA. Multisite haplotype on cattle chromosome 3 is associated with quantitative trait locus effects on lactation traits. Physiological Genomics. 43: 1185-97. PMID 21896633 DOI: 10.1152/Physiolgenomics.00253.2010  0.304
2011 Kohman RA, Rodriguez-Zas SL, Southey BR, Kelley KW, Dantzer R, Rhodes JS. Voluntary wheel running reverses age-induced changes in hippocampal gene expression. Plos One. 6: e22654. PMID 21857943 DOI: 10.1371/Journal.Pone.0022654  0.321
2011 Delfino KR, Serão NV, Southey BR, Rodriguez-Zas SL. Therapy-, gender- and race-specific microRNA markers, target genes and networks related to glioblastoma recurrence and survival. Cancer Genomics & Proteomics. 8: 173-83. PMID 21737610  0.582
2011 Serão NV, Delfino KR, Southey BR, Beever JE, Rodriguez-Zas SL. Cell cycle and aging, morphogenesis, and response to stimuli genes are individualized biomarkers of glioblastoma progression and survival. Bmc Medical Genomics. 4: 49. PMID 21649900 DOI: 10.1186/1755-8794-4-49  0.66
2011 Naeger NL, Van Nest BN, Johnson JN, Boyd SD, Southey BR, Rodriguez-Zas SL, Moore D, Robinson GE. Neurogenomic signatures of spatiotemporal memories in time-trained forager honey bees. The Journal of Experimental Biology. 214: 979-87. PMID 21346126 DOI: 10.1242/Jeb.053421  0.327
2011 Adams HA, Southey BR, Everts RE, Marjani SL, Tian CX, Lewin HA, Rodriguez-Zas SL. Transferase activity function and system development process are critical in cattle embryo development. Functional & Integrative Genomics. 11: 139-50. PMID 20844914 DOI: 10.1007/S10142-010-0189-9  0.598
2011 Moyes KM, Drackley JK, Morin DE, Rodriguez-Zas SL, Everts RE, Lewin HA, Loor JJ. Predisposition of cows to mastitis in non-infected mammary glands: effects of dietary-induced negative energy balance during mid-lactation on immune-related genes. Functional & Integrative Genomics. 11: 151-6. PMID 20809086 DOI: 10.1007/S10142-010-0186-Z  0.372
2011 Delfino KR, Rodriguez-Zas SL. Integration of statistical models and visualization tools to characterize microRNA networks influencing cancer 2011 Ieee International Conference On Bioinformatics and Biomedicine Workshops, Bibmw 2011. 969-971. DOI: 10.1109/BIBMW.2011.6112523  0.552
2011 Southey B, Porter K, Delfino K, Sweedler J, Rodriguez-Zas S. Relationship between neuropeptide gene expression and drug abuse using meta-analysis Brain, Behavior, and Immunity. 25: S208. DOI: 10.1016/J.Bbi.2011.07.105  0.628
2011 Delfino K, Serão N, Southey B, Rodriguez-Zas S. 98. MicroRNAs and target genes offer insights into the relationship between cancer and neuroimmune pathways Brain, Behavior, and Immunity. 25: S207. DOI: 10.1016/J.Bbi.2011.07.101  0.626
2010 Ko Y, Zhai C, Rodriguez-Zas SL. Discovery of gene network variability across samples representing multiple classes. International Journal of Bioinformatics Research and Applications. 6: 402-17. PMID 20940126 DOI: 10.1504/Ijbra.2010.036002  0.369
2010 Sen Sarma M, Rodriguez-Zas SL, Gernat T, Nguyen T, Newman T, Robinson GE. Distance-responsive genes found in dancing honey bees. Genes, Brain, and Behavior. 9: 825-30. PMID 20618450 DOI: 10.1111/J.1601-183X.2010.00622.X  0.35
2010 Piantoni P, Bionaz M, Graugnard DE, Daniels KM, Everts RE, Rodriguez-Zas SL, Lewin HA, Hurley HL, Akers M, Loor JJ. Functional and gene network analyses of transcriptional signatures characterizing pre-weaned bovine mammary parenchyma or fat pad uncovered novel inter-tissue signaling networks during development. Bmc Genomics. 11: 331. PMID 20504330 DOI: 10.1186/1471-2164-11-331  0.353
2010 Toth AL, Varala K, Henshaw MT, Rodriguez-Zas SL, Hudson ME, Robinson GE. Brain transcriptomic analysis in paper wasps identifies genes associated with behaviour across social insect lineages. Proceedings. Biological Sciences / the Royal Society. 277: 2139-48. PMID 20236980 DOI: 10.1098/Rspb.2010.0090  0.414
2010 Moyes KM, Drackley JK, Morin DE, Rodriguez-Zas SL, Everts RE, Lewin HA, Loor JJ. Mammary gene expression profiles during an intramammary challenge reveal potential mechanisms linking negative energy balance with impaired immune response. Physiological Genomics. 41: 161-70. PMID 20103698 DOI: 10.1152/Physiolgenomics.00197.2009  0.375
2010 Soria-Guerra RE, Rosales-Mendoza S, Chang S, Haudenshield JS, Padmanaban A, Rodriguez-Zas S, Hartman GL, Ghabrial SA, Korban SS. Transcriptome analysis of resistant and susceptible genotypes of Glycine tomentella during Phakopsora pachyrhizi infection reveals novel rust resistance genes. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 120: 1315-33. PMID 20058146 DOI: 10.1007/S00122-009-1258-0  0.371
2010 Delfino KR, Southey BR, Sweedler JV, Rodriguez-Zas SL. Genome-wide census and expression profiling of chicken neuropeptide and prohormone convertase genes. Neuropeptides. 44: 31-44. PMID 20006904 DOI: 10.1016/J.Npep.2009.11.002  0.676
2009 Moyes KM, Drackley JK, Morin DE, Bionaz M, Rodriguez-Zas SL, Everts RE, Lewin HA, Loor JJ. Gene network and pathway analysis of bovine mammary tissue challenged with Streptococcus uberis reveals induction of cell proliferation and inhibition of PPARgamma signaling as potential mechanism for the negative relationships between immune response and lipid metabolism. Bmc Genomics. 10: 542. PMID 19925655 DOI: 10.1186/1471-2164-10-542  0.325
2009 Alaux C, Sinha S, Hasadsri L, Hunt GJ, Guzmán-Novoa E, DeGrandi-Hoffman G, Uribe-Rubio JL, Southey BR, Rodriguez-Zas S, Robinson GE. Honey bee aggression supports a link between gene regulation and behavioral evolution. Proceedings of the National Academy of Sciences of the United States of America. 106: 15400-5. PMID 19706434 DOI: 10.1073/Pnas.0907043106  0.404
2009 Alaux C, Duong N, Schneider SS, Southey BR, Rodriguez-Zas S, Robinson GE. Modulatory communication signal performance is associated with a distinct neurogenomic state in honey bees. Plos One. 4: e6694. PMID 19693278 DOI: 10.1371/Journal.Pone.0006694  0.308
2009 Sen Sarma M, Rodriguez-Zas SL, Hong F, Zhong S, Robinson GE. Transcriptomic profiling of central nervous system regions in three species of honey bee during dance communication behavior. Plos One. 4: e6408. PMID 19641619 DOI: 10.1371/Journal.Pone.0006408  0.363
2009 Ayroles JF, Hughes KA, Rowe KC, Reedy MM, Rodriguez-Zas SL, Drnevich JM, Cáceres CE, Paige KN. A genomewide assessment of inbreeding depression: gene number, function, and mode of action. Conservation Biology : the Journal of the Society For Conservation Biology. 23: 920-30. PMID 19627320 DOI: 10.1111/J.1523-1739.2009.01186.X  0.353
2009 Dong S, Replogle KL, Hasadsri L, Imai BS, Yau PM, Rodriguez-Zas S, Southey BR, Sweedler JV, Clayton DF. Discrete molecular states in the brain accompany changing responses to a vocal signal. Proceedings of the National Academy of Sciences of the United States of America. 106: 11364-9. PMID 19541599 DOI: 10.1073/Pnas.0812998106  0.337
2009 Ko Y, Zhai C, Rodriguez-Zas S. Inference of gene pathways using mixture Bayesian networks. Bmc Systems Biology. 3: 54. PMID 19454027 DOI: 10.1186/1752-0509-3-54  0.349
2009 Southey BR, Rodriguez-Zas SL, Sweedler JV. Characterization of the prohormone complement in cattle using genomic libraries and cleavage prediction approaches. Bmc Genomics. 10: 228. PMID 19445702 DOI: 10.1186/1471-2164-10-228  0.364
2009 Elsik CG, Tellam RL, Worley KC, Gibbs RA, Muzny DM, Weinstock GM, Adelson DL, Eichler EE, Elnitski L, Guigó R, Hamernik DL, Kappes SM, Lewin HA, Lynn DJ, ... ... Rodriguez-Zas SL, et al. The genome sequence of taurine cattle: a window to ruminant biology and evolution. Science (New York, N.Y.). 324: 522-8. PMID 19390049 DOI: 10.1126/Science.1169588  0.34
2009 Alaux C, Le Conte Y, Adams HA, Rodriguez-Zas S, Grozinger CM, Sinha S, Robinson GE. Regulation of brain gene expression in honey bees by brood pheromone. Genes, Brain, and Behavior. 8: 309-19. PMID 19220482 DOI: 10.1111/J.1601-183X.2009.00480.X  0.596
2009 Marjani SL, Le Bourhis D, Vignon X, Heyman Y, Everts RE, Rodriguez-Zas SL, Lewin HA, Renard JP, Yang X, Tian XC. Embryonic gene expression profiling using microarray analysis. Reproduction, Fertility, and Development. 21: 22-30. PMID 19152742 DOI: 10.1071/Rd08217  0.372
2009 Smith SL, Everts RE, Sung LY, Du F, Page RL, Henderson B, Rodriguez-Zas SL, Nedambale TL, Renard JP, Lewin HA, Yang X, Tian XC. Gene expression profiling of single bovine embryos uncovers significant effects of in vitro maturation, fertilization and culture. Molecular Reproduction and Development. 76: 38-47. PMID 18449896 DOI: 10.1002/Mrd.20927  0.368
2008 Southey BR, Sweedler JV, Rodriguez-Zas SL. A python analytical pipeline to identify prohormone precursors and predict prohormone cleavage sites. Frontiers in Neuroinformatics. 2: 7. PMID 19169350 DOI: 10.3389/Neuro.11.007.2008  0.318
2008 Adams HA, Southey BR, Robinson GE, Rodriguez-Zas SL. Meta-analysis of genome-wide expression patterns associated with behavioral maturation in honey bees. Bmc Genomics. 9: 503. PMID 18950506 DOI: 10.1186/1471-2164-9-503  0.63
2008 Replogle K, Arnold AP, Ball GF, Band M, Bensch S, Brenowitz EA, Dong S, Drnevich J, Ferris M, George JM, Gong G, Hasselquist D, Hernandez AG, Kim R, Lewin HA, ... ... Rodriguez-Zas S, et al. The Songbird Neurogenomics (SoNG) Initiative: community-based tools and strategies for study of brain gene function and evolution. Bmc Genomics. 9: 131. PMID 18366674 DOI: 10.1186/1471-2164-9-131  0.342
2008 Southey BR, Sweedler JV, Rodriguez-Zas SL. Prediction of neuropeptide cleavage sites in insects. Bioinformatics (Oxford, England). 24: 815-25. PMID 18252740 DOI: 10.1093/Bioinformatics/Btn044  0.325
2008 Rodriguez-Zas SL, Ko Y, Adams HA, Southey BR. Advancing the understanding of the embryo transcriptome co-regulation using meta-, functional, and gene network analysis tools. Reproduction (Cambridge, England). 135: 213-24. PMID 18239050 DOI: 10.1530/Rep-07-0391  0.624
2008 Rodriguez-Zas SL, Schellander K, Lewin HA. Biological interpretations of transcriptomic profiles in mammalian oocytes and embryos. Reproduction (Cambridge, England). 135: 129-39. PMID 18239044 DOI: 10.1530/Rep-07-0426  0.415
2008 Everts RE, Chavatte-Palmer P, Razzak A, Hue I, Green CA, Oliveira R, Vignon X, Rodriguez-Zas SL, Tian XC, Yang X, Renard JP, Lewin HA. Aberrant gene expression patterns in placentomes are associated with phenotypically normal and abnormal cattle cloned by somatic cell nuclear transfer. Physiological Genomics. 33: 65-77. PMID 18089771 DOI: 10.1152/Physiolgenomics.00223.2007  0.421
2007 Loor JJ, Everts RE, Bionaz M, Dann HM, Morin DE, Oliveira R, Rodriguez-Zas SL, Drackley JK, Lewin HA. Nutrition-induced ketosis alters metabolic and signaling gene networks in liver of periparturient dairy cows. Physiological Genomics. 32: 105-16. PMID 17925483 DOI: 10.1152/Physiolgenomics.00188.2007  0.367
2007 Yeater KM, Chandra J, Cheng G, Mukherjee PK, Zhao X, Rodriguez-Zas SL, Kwast KE, Ghannoum MA, Hoyer LL. Temporal analysis of Candida albicans gene expression during biofilm development. Microbiology (Reading, England). 153: 2373-85. PMID 17660402 DOI: 10.1099/Mic.0.2007/006163-0  0.369
2006 Whitfield CW, Ben-Shahar Y, Brillet C, Leoncini I, Crauser D, Leconte Y, Rodriguez-Zas S, Robinson GE. Genomic dissection of behavioral maturation in the honey bee. Proceedings of the National Academy of Sciences of the United States of America. 103: 16068-75. PMID 17065327 DOI: 10.1073/Pnas.0606909103  0.384
2006 Rodriguez-Zas SL, Southey BR, Whitfield CW, Robinson GE. Semiparametric approach to characterize unique gene expression trajectories across time. Bmc Genomics. 7: 233. PMID 16970825 DOI: 10.1186/1471-2164-7-233  0.392
2006 Southey BR, Amare A, Zimmerman TA, Rodriguez-Zas SL, Sweedler JV. NeuroPred: a tool to predict cleavage sites in neuropeptide precursors and provide the masses of the resulting peptides. Nucleic Acids Research. 34: W267-72. PMID 16845008 DOI: 10.1093/Nar/Gkl161  0.672
2006 Loor JJ, Dann HM, Guretzky NA, Everts RE, Oliveira R, Green CA, Litherland NB, Rodriguez-Zas SL, Lewin HA, Drackley JK. Plane of nutrition prepartum alters hepatic gene expression and function in dairy cows as assessed by longitudinal transcript and metabolic profiling. Physiological Genomics. 27: 29-41. PMID 16757553 DOI: 10.1152/Physiolgenomics.00036.2006  0.338
2006 Amare A, Hummon AB, Southey BR, Zimmerman TA, Rodriguez-Zas SL, Sweedler JV. Bridging neuropeptidomics and genomics with bioinformatics: Prediction of mammalian neuropeptide prohormone processing. Journal of Proteome Research. 5: 1162-7. PMID 16674105 DOI: 10.1021/Pr0504541  0.683
2006 Southey BR, Rodriguez-Zas SL, Sweedler JV. Prediction of neuropeptide prohormone cleavages with application to RFamides. Peptides. 27: 1087-98. PMID 16494967 DOI: 10.1016/J.Peptides.2005.07.026  0.306
2006 Smith SL, Sung L, Page R, Henderson B, Du F, Everts RE, Nedambale T, Rodriguez-Zas S, Renard J, Lewin HA, Yang X, Tian XC. 6 EXPRESSION PROFILING OF SINGLE BOVINE EMBRYOS REVEALS SIGNIFICANT EFFECTS OF IN VITRO MATURATION, FERTILIZATION AND CULTURE Reproduction, Fertility and Development. 18: 111. DOI: 10.1071/Rdv18N2Ab6  0.357
2005 Zou J, Rodriguez-Zas S, Aldea M, Li M, Zhu J, Gonzalez DO, Vodkin LO, DeLucia E, Clough SJ. Expression profiling soybean response to Pseudomonas syringae reveals new defense-related genes and rapid HR-specific downregulation of photosynthesis. Molecular Plant-Microbe Interactions : Mpmi. 18: 1161-74. PMID 16353551 DOI: 10.1094/Mpmi-18-1161  0.353
2005 Smith SL, Everts RE, Tian XC, Du F, Sung LY, Rodriguez-Zas SL, Jeong BS, Renard JP, Lewin HA, Yang X. Global gene expression profiles reveal significant nuclear reprogramming by the blastocyst stage after cloning. Proceedings of the National Academy of Sciences of the United States of America. 102: 17582-7. PMID 16314565 DOI: 10.1073/Pnas.0508952102  0.368
2005 Stearns TM, Beever JE, Southey BR, Ellis M, McKeith FK, Rodriguez-Zas SL. Evaluation of approaches to detect quantitative trait loci for growth, carcass, and meat quality on swine chromosomes 2, 6, 13, and 18. II. Multivariate and principal component analyses. Journal of Animal Science. 83: 2471-81. PMID 16230643 DOI: 10.2527/2005.83112471X  0.318
2005 Loor JJ, Dann HM, Everts RE, Oliveira R, Green CA, Guretzky NA, Rodriguez-Zas SL, Lewin HA, Drackley JK. Temporal gene expression profiling of liver from periparturient dairy cows reveals complex adaptive mechanisms in hepatic function. Physiological Genomics. 23: 217-26. PMID 16091418 DOI: 10.1152/Physiolgenomics.00132.2005  0.365
2004 Drnevich JM, Reedy MM, Ruedi EA, Rodriguez-Zas S, Hughes KA. Quantitative evolutionary genomics: differential gene expression and male reproductive success in Drosophila melanogaster. Proceedings. Biological Sciences / the Royal Society. 271: 2267-73. PMID 15539352 DOI: 10.1098/Rspb.2004.2880  0.401
2002 Chesler EJ, Wilson SG, Lariviere WR, Rodriguez-Zas SL, Mogil JS. Identification and ranking of genetic and laboratory environment factors influencing a behavioral trait, thermal nociception, via computational analysis of a large data archive. Neuroscience and Biobehavioral Reviews. 26: 907-23. PMID 12667496 DOI: 10.1016/S0149-7634(02)00103-3  0.311
2002 Rodriguez-Zas SL, Southey BR, Heyen DW, Lewin HA. Detection of quantitative trait loci influencing dairy traits using a model for longitudinal data. Journal of Dairy Science. 85: 2681-91. PMID 12416823 DOI: 10.3168/Jds.S0022-0302(02)74354-3  0.304
2002 Wilson SG, Chesler EJ, Hain H, Rankin AJ, Schwarz JZ, Call SB, Murray MR, West EE, Teuscher C, Rodriguez-Zas S, Belknap JK, Mogil JS. Identification of quantitative trait loci for chemical/inflammatory nociception in mice. Pain. 96: 385-91. PMID 11973013 DOI: 10.1016/S0304-3959(01)00489-4  0.319
2001 Rodriguez-Zas SL, Southey BR. Analysis of nucleotide sequence data using mixed model methodology Genetic Epidemiology. 21: S638-S642. PMID 11793753 DOI: 10.1002/Gepi.2001.21.S1.S638  0.352
2000 Rodriguez-Zas SL, Gianola D, Shook GE. An approximate Bayesian analysis of somatic cell score curves in Holsteins Acta Agriculturae Scandinavica - Section a: Animal Science. 50: 291-299. DOI: 10.1080/090647000750069485  0.489
2000 Rodriguez-Zas SL, Gianola D, Shook GE. Evaluation of models for somatic cell score lactation patterns in Holsteins Livestock Production Science. 67: 19-30. DOI: 10.1016/S0301-6226(00)00193-7  0.494
1998 Rodriguez-Zas SL, Gianola D, Shook GE. Bayesian analysis via Gibbs sampling of susceptibility to intramammary infection in Holstein cattle. Journal of Dairy Science. 81: 2710-22. PMID 9812276 DOI: 10.3168/Jds.S0022-0302(98)75828-X  0.484
1997 Rodriguez-Zas SL, Gianola D, Shook GE. Factors affecting susceptibility to intramammary infection and mastitis: an approximate Bayesian analysis. Journal of Dairy Science. 80: 75-85. PMID 9120098 DOI: 10.3168/Jds.S0022-0302(97)75914-9  0.492
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