Matthew Brooks
Affiliations: | New York University, New York, NY, United States |
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"Matthew Brooks"
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| Huang J, Cheng CY, Brooks MD, et al. (2025) NUE regulons conserved model-to-crop enhance machine learning predictions of nitrogen use efficiency. The Plant Cell |
| de Silva K, Coelho C, Gao J, et al. (2025) Shining light on Arabidopsis regulatory networks integrating nitrogen use and photosynthesis. The Plant Journal : For Cell and Molecular Biology. 122: e70211 |
| Brooks MD, Szeto RC. (2024) Biological nitrogen fixation maintains carbon/nitrogen balance and photosynthesis at elevated CO. Plant, Cell & Environment |
| Shanks CM, Rothkegel K, Brooks MD, et al. (2024) Nitrogen sensing and regulatory networks: It's about time and space. The Plant Cell |
| Huang J, Katari MS, Juang CL, et al. (2023) Building High-Confidence Gene Regulatory Networks by Integrating Validated TF-Target Gene Interactions Using ConnecTF. Methods in Molecular Biology (Clifton, N.J.). 2698: 195-220 |
| Alvarez JM, Hinckley WE, Leonelli L, et al. (2023) DamID-seq: A Genome-Wide DNA Methylation Method that Captures Both Transient and Stable TF-DNA Interactions in Plant Cells. Methods in Molecular Biology (Clifton, N.J.). 2698: 87-107 |
| Shanks CM, Huang J, Cheng CY, et al. (2022) Validation of a high-confidence regulatory network for gene-to-NUE phenotype in field-grown rice. Frontiers in Plant Science. 13: 1006044 |
| Brooks MD, Reed KM, Krouk G, et al. (2022) The TARGET System: Rapid Identification of Direct Targets of Transcription Factors by Gene Regulation in Plant Cells. Methods in Molecular Biology (Clifton, N.J.). 2594: 1-12 |
| Liang X, Brooks MJ, Swaroop A. (2022) Developmental genome-wide occupancy analysis of bZIP transcription factor NRL uncovers the role of c-Jun in early differentiation of rod photoreceptors in the mammalian retina. Human Molecular Genetics |
| Alvarez JM, Brooks MD, Swift J, et al. (2021) Time-Based Systems Biology Approaches to Capture and Model Dynamic Gene Regulatory Networks. Annual Review of Plant Biology |