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| Feng Z, Feng J, Zhang B, et al. (2023) PhasiHunter: a robust phased siRNA regulatory cascade mining tool based on multiple reference sequences. Bioinformatics (Oxford, England). 39 |
| Huang J, Katari MS, Juang CL, et al. (2023) Building High-Confidence Gene Regulatory Networks by Integrating Validated TF-Target Gene Interactions Using ConnecTF. Methods in Molecular Biology (Clifton, N.J.). 2698: 195-220 |
| Zhang B, Zhu X, Chen Z, et al. (2023) RiceTFtarget: A Rice Transcription Factor-Target Prediction Server Based on Co-expression and Machine Learning. Plant Physiology |
| Xu M, Gu Z, Huang J, et al. (2023) The Complete Mitochondrial Genome of (Mollusca: Bivalvia), Novel Gene Rearrangements, and the Phylogenetic Relationships of Mytilidae. Genes. 14 |
| Shanks CM, Huang J, Cheng CY, et al. (2022) Validation of a high-confidence regulatory network for gene-to-NUE phenotype in field-grown rice. Frontiers in Plant Science. 13: 1006044 |
| Gao X, Zhang J, Li J, et al. (2021) The phosphoproteomic and interactomic landscape of qGL3/OsPPKL1-mediated brassinosteroid signaling in rice. The Plant Journal : For Cell and Molecular Biology |
| Cheng CY, Li Y, Varala K, et al. (2021) Evolutionarily informed machine learning enhances the power of predictive gene-to-phenotype relationships. Nature Communications. 12: 5627 |
| Brooks MD, Juang CL, Katari MS, et al. (2021) ConnecTF: A platform to integrate transcription factor-gene interactions and validate regulatory networks. Plant Physiology. 185: 49-66 |
| Fei Y, Feng J, Wang R, et al. (2021) PhasiRNAnalyzer: an integrated analyser for plant phased siRNAs. Rna Biology. 1-8 |
| Vendramin S, Huang J, Crisp PA, et al. (2020) Epigenetic Regulation of ABA-Induced Transcriptional Responses in Maize. G3 (Bethesda, Md.) |